Wall clock time and date at job start Tue Mar 31 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30846 * 1 3 3 Si 1.86797 * 120.00345 * 2 1 4 4 H 1.48500 * 109.47202 * 270.00153 * 3 2 1 5 5 H 1.48504 * 109.47014 * 29.99743 * 3 2 1 6 6 H 1.48506 * 109.47227 * 149.99794 * 3 2 1 7 7 C 1.39925 * 119.99606 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99853 * 175.55029 * 7 2 1 9 9 C 1.41291 * 120.00275 * 355.55721 * 7 2 1 10 10 C 1.40636 * 120.23091 * 34.76824 * 9 7 2 11 11 C 1.38134 * 119.71428 * 179.97438 * 10 9 7 12 12 N 1.40013 * 119.91531 * 179.97438 * 11 10 9 13 13 C 1.34773 * 119.99685 * 35.20520 * 12 11 10 14 14 O 1.21293 * 119.99924 * 355.95278 * 13 12 11 15 15 C 1.50703 * 120.00246 * 175.96103 * 13 12 11 16 16 H 1.09000 * 110.20888 * 320.47172 * 15 13 12 17 17 C 1.54484 * 110.24587 * 82.49190 * 15 13 12 18 18 C 1.54629 * 101.76373 * 144.41880 * 17 15 13 19 19 C 1.51280 * 104.19441 * 335.20206 * 18 17 15 20 20 O 1.21282 * 124.94173 * 196.27626 * 19 18 17 21 21 N 1.34424 * 110.11587 * 16.25315 * 19 18 17 22 22 C 1.39369 * 120.17811 * 0.25473 * 11 10 9 23 23 C 1.38374 * 120.46784 * 359.48167 * 22 11 10 24 24 C 1.38007 * 120.28202 * 0.51718 * 23 22 11 25 25 F 1.35104 * 120.08999 * 179.71819 * 24 23 22 26 26 H 0.97008 * 119.99630 * 0.02562 * 1 2 3 27 27 H 1.08005 * 120.14529 * 359.95498 * 10 9 7 28 28 H 0.96995 * 119.99818 * 215.47709 * 12 11 10 29 29 H 1.09002 * 110.96892 * 262.53975 * 17 15 13 30 30 H 1.08995 * 110.96632 * 26.29855 * 17 15 13 31 31 H 1.08994 * 110.48429 * 216.52802 * 18 17 15 32 32 H 1.08997 * 110.59829 * 93.93369 * 18 17 15 33 33 H 0.97006 * 124.34688 * 180.42953 * 21 19 18 34 34 H 1.08002 * 119.77033 * 179.72256 * 22 11 10 35 35 H 1.07997 * 119.85436 * 180.26188 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5401 1.4400 0.7001 7 6 2.0080 -1.2118 0.0005 8 1 3.0857 -1.2133 -0.0720 9 6 1.3047 -2.4336 0.0959 10 6 0.0426 -2.5731 -0.5087 11 6 -0.6354 -3.7725 -0.4093 12 7 -1.8923 -3.9159 -1.0092 13 6 -2.1553 -3.2991 -2.1783 14 8 -1.3299 -2.5614 -2.6738 15 6 -3.4749 -3.5259 -2.8698 16 1 -3.7698 -4.5718 -2.7846 17 6 -4.5612 -2.6110 -2.2619 18 6 -5.4131 -2.2643 -3.5049 19 6 -4.4595 -2.4330 -4.6671 20 8 -4.6408 -1.9955 -5.7836 21 7 -3.3816 -3.1379 -4.2820 22 6 -0.0742 -4.8385 0.2915 23 6 1.1695 -4.7112 0.8847 24 6 1.8636 -3.5216 0.7973 25 9 3.0751 -3.3997 1.3828 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3948 -1.7460 -1.0482 28 1 -2.5751 -4.4559 -0.5813 29 1 -5.1532 -3.1478 -1.5206 30 1 -4.1183 -1.7137 -1.8299 31 1 -5.7682 -1.2353 -3.4491 32 1 -6.2534 -2.9524 -3.5980 33 1 -2.6375 -3.3611 -4.8630 34 1 -0.6120 -5.7719 0.3689 35 1 1.5968 -5.5450 1.4218 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143130463.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:49 Heat of formation + Delta-G solvation = -94.833920 kcal Electronic energy + Delta-G solvation = -22852.922074 eV Core-core repulsion = 19150.934495 eV Total energy + Delta-G solvation = -3701.987579 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -47.27065 -40.81197 -39.26009 -37.26622 -36.04837 -34.43507 -33.29939 -31.43334 -29.82637 -29.25324 -27.21920 -25.44960 -23.04090 -21.83590 -21.05033 -20.57502 -19.81951 -18.17454 -17.36869 -17.21891 -16.11818 -15.98826 -15.79563 -15.10958 -14.87108 -14.71898 -14.09617 -14.04543 -13.85095 -13.69099 -13.28934 -13.00236 -12.83483 -12.57570 -12.14331 -11.90677 -11.83984 -11.61632 -11.33906 -11.22019 -11.02110 -10.51480 -10.46750 -9.99277 -9.80437 -9.68899 -9.45535 -9.10268 -8.90677 -7.52738 -6.99610 -6.71529 -4.50577 2.30908 2.48977 2.69617 2.89619 3.06875 3.07979 3.13225 3.20915 3.56392 3.93164 4.17092 4.26301 4.53677 4.62146 4.77108 4.96060 5.17487 5.37107 5.44742 5.57117 5.76994 5.79116 6.00227 6.26840 6.59569 6.61682 6.78704 6.88008 6.92884 7.15478 7.30223 7.41441 7.60967 7.92281 7.97262 8.14830 8.20025 8.38868 8.62739 8.75966 8.76941 10.17327 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.005064 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.987259 B = 5527.506603 C = 6886.134625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.450 4.450 8 H 0.081 0.919 9 C 0.088 3.912 10 C -0.126 4.126 11 C 0.124 3.876 12 N -0.659 5.659 13 C 0.493 3.507 14 O -0.496 6.496 15 C 0.115 3.885 16 H 0.104 0.896 17 C -0.123 4.123 18 C -0.154 4.154 19 C 0.523 3.477 20 O -0.536 6.536 21 N -0.706 5.706 22 C -0.229 4.229 23 C -0.117 4.117 24 C -0.027 4.027 25 F -0.162 7.162 26 H 0.280 0.720 27 H 0.161 0.839 28 H 0.400 0.600 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.416 0.584 34 H 0.101 0.899 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 -6.462 -0.922 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.145 4.145 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.480 4.480 8 H 0.099 0.901 9 C 0.084 3.916 10 C -0.147 4.147 11 C 0.032 3.968 12 N -0.304 5.304 13 C 0.277 3.723 14 O -0.369 6.369 15 C 0.005 3.995 16 H 0.122 0.878 17 C -0.161 4.161 18 C -0.194 4.194 19 C 0.310 3.690 20 O -0.413 6.413 21 N -0.362 5.362 22 C -0.251 4.251 23 C -0.136 4.136 24 C -0.047 4.047 25 F -0.141 7.141 26 H 0.091 0.909 27 H 0.178 0.822 28 H 0.234 0.766 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.256 0.744 34 H 0.119 0.881 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.839 -5.479 -1.830 12.282 hybrid contribution 0.596 0.204 0.316 0.705 sum -10.242 -5.275 -1.514 11.620 Atomic orbital electron populations 1.69725 1.07390 1.29080 1.36300 1.25883 0.94987 1.01393 0.92258 0.86120 0.80290 0.79940 0.79306 1.19283 1.20099 1.18470 1.19448 0.95062 0.89807 1.43680 0.90056 1.17589 0.92764 0.91554 0.89723 1.21719 0.96421 0.95448 1.01092 1.17671 0.85660 0.94912 0.98605 1.43259 1.14445 1.50711 1.21964 1.20596 0.88681 0.81380 0.81655 1.90832 1.47236 1.34155 1.64635 1.21592 0.94606 1.00787 0.82466 0.87822 1.22644 0.95243 1.00710 0.97542 1.22357 0.98515 1.05422 0.93112 1.20824 0.82751 0.76360 0.89113 1.90757 1.77388 1.50154 1.22980 1.45940 1.23113 1.56080 1.11083 1.19903 0.97546 0.97241 1.10362 1.20266 0.95361 0.95798 1.02221 1.18064 0.84395 0.97345 1.04934 1.91280 1.43020 1.96802 1.83011 0.90905 0.82156 0.76595 0.88115 0.88790 0.87599 0.87479 0.74409 0.88118 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.69 10.60 55.55 0.59 -20.10 16 2 C 0.07 1.83 5.42 -17.34 -0.09 1.74 16 3 Si 0.92 19.39 29.56 -169.99 -5.03 14.37 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.45 -12.27 8.70 -37.79 -0.33 -12.60 16 8 H 0.08 2.18 7.84 -52.48 -0.41 1.77 16 9 C 0.09 2.35 5.56 -106.78 -0.59 1.76 16 10 C -0.13 -3.18 7.30 -38.72 -0.28 -3.46 16 11 C 0.12 2.60 6.29 -83.74 -0.53 2.07 16 12 N -0.66 -10.31 5.34 -9.90 -0.05 -10.36 16 13 C 0.49 7.89 6.85 -10.99 -0.08 7.81 16 14 O -0.50 -10.68 14.03 5.55 0.08 -10.60 16 15 C 0.12 1.23 3.93 -68.16 -0.27 0.96 16 16 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 17 C -0.12 -1.07 6.68 -25.10 -0.17 -1.23 16 18 C -0.15 -1.36 6.86 -26.74 -0.18 -1.55 16 19 C 0.52 7.02 8.43 -10.86 -0.09 6.93 16 20 O -0.54 -9.38 18.03 5.56 0.10 -9.28 16 21 N -0.71 -8.93 5.47 -53.88 -0.29 -9.23 16 22 C -0.23 -4.52 9.97 -39.11 -0.39 -4.91 16 23 C -0.12 -2.51 10.00 -39.62 -0.40 -2.91 16 24 C -0.03 -0.67 7.31 -38.62 -0.28 -0.95 16 25 F -0.16 -4.05 16.82 2.25 0.04 -4.01 16 26 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 27 H 0.16 4.37 4.31 -52.48 -0.23 4.14 16 28 H 0.40 4.39 8.82 -40.82 -0.36 4.03 16 29 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 1.02 7.90 -51.93 -0.41 0.61 16 31 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.42 5.43 8.96 -40.82 -0.37 5.07 16 34 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.11 1.97 8.06 -52.49 -0.42 1.54 16 LS Contribution 309.26 15.07 4.66 4.66 Total: -1.00 -33.54 309.26 -7.03 -40.58 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -3.44 Total: 10.32 kcal Atomic # 6 Polarization: -2.67 SS G_CDS: -3.68 Total: -6.35 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.24 Total: -39.69 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 9 Polarization: -4.05 SS G_CDS: 0.04 Total: -4.01 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.54 -7.03 -40.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143130463.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.259 kcal (2) G-P(sol) polarization free energy of solvation -33.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds