Wall clock time and date at job start Tue Mar 31 2020 06:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86809 * 119.99781 * 2 1 4 4 H 1.48498 * 109.46874 * 275.32047 * 3 2 1 5 5 H 1.48499 * 109.47073 * 35.32057 * 3 2 1 6 6 H 1.48500 * 109.46823 * 155.31870 * 3 2 1 7 7 C 1.39921 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00039 * 346.53765 * 7 2 1 9 9 C 1.41290 * 120.00040 * 166.53886 * 7 2 1 10 10 C 1.40644 * 120.23374 * 331.42092 * 9 7 2 11 11 C 1.38137 * 119.71121 * 180.28966 * 10 9 7 12 12 N 1.40012 * 119.90846 * 179.70843 * 11 10 9 13 13 C 1.34770 * 120.00107 * 326.38684 * 12 11 10 14 14 O 1.21294 * 120.00114 * 355.29872 * 13 12 11 15 15 C 1.50705 * 120.00202 * 175.29744 * 13 12 11 16 16 H 1.08997 * 110.21269 * 41.93127 * 15 13 12 17 17 C 1.54478 * 110.24662 * 280.00231 * 15 13 12 18 18 C 1.54622 * 101.76536 * 215.57979 * 17 15 13 19 19 C 1.51284 * 104.19448 * 24.79831 * 18 17 15 20 20 O 1.21283 * 124.93691 * 163.74668 * 19 18 17 21 21 N 1.34413 * 110.11584 * 343.74788 * 19 18 17 22 22 C 1.39369 * 120.17791 * 359.43983 * 11 10 9 23 23 C 1.38364 * 120.47013 * 0.29200 * 22 11 10 24 24 C 1.38006 * 120.28588 * 0.02562 * 23 22 11 25 25 F 1.35108 * 120.09345 * 180.02562 * 24 23 22 26 26 H 0.97000 * 120.00097 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.14123 * 0.02562 * 10 9 7 28 28 H 0.96999 * 119.99917 * 146.66315 * 12 11 10 29 29 H 1.08998 * 110.97206 * 333.70290 * 17 15 13 30 30 H 1.09001 * 110.96941 * 97.45958 * 17 15 13 31 31 H 1.08999 * 110.48645 * 143.47246 * 18 17 15 32 32 H 1.08995 * 110.48854 * 265.99061 * 18 17 15 33 33 H 0.97000 * 124.35233 * 179.57191 * 21 19 18 34 34 H 1.07998 * 119.76488 * 180.27391 * 22 11 10 35 35 H 1.07998 * 119.85546 * 179.97438 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6179 0.0000 4 1 2.3775 2.1114 -1.3940 5 1 1.5006 2.6177 0.8095 6 1 3.5917 1.4104 0.5846 7 6 2.0082 -1.2117 -0.0005 8 1 1.4905 -2.1343 0.2168 9 6 3.3920 -1.2284 -0.2854 10 6 3.9556 -0.2443 -1.1172 11 6 5.3088 -0.2744 -1.3934 12 7 5.8732 0.6997 -2.2259 13 6 5.1585 1.2077 -3.2493 14 8 4.0593 0.7615 -3.5019 15 6 5.7250 2.3303 -4.0800 16 1 6.7802 2.1509 -4.2861 17 6 5.5449 3.6795 -3.3494 18 6 5.2718 4.6423 -4.5280 19 6 4.7124 3.7499 -5.6141 20 8 4.1136 4.1402 -6.5939 21 7 4.9757 2.4616 -5.3351 22 6 6.1147 -1.2683 -0.8411 23 6 5.5689 -2.2368 -0.0173 24 6 4.2183 -2.2289 0.2662 25 9 3.6897 -3.1762 1.0716 26 1 -0.4850 0.8400 0.0004 27 1 3.3325 0.5290 -1.5417 28 1 6.7800 1.0059 -2.0685 29 1 4.6940 3.6442 -2.6692 30 1 6.4548 3.9604 -2.8190 31 1 4.5408 5.3983 -4.2415 32 1 6.1975 5.1136 -4.8580 33 1 4.7050 1.7147 -5.8915 34 1 7.1725 -1.2829 -1.0579 35 1 6.2025 -3.0026 0.4050 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143130464.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:51 Heat of formation + Delta-G solvation = -121.072692 kcal Electronic energy + Delta-G solvation = -23097.785601 eV Core-core repulsion = 19394.660224 eV Total energy + Delta-G solvation = -3703.125377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.28038 -42.04964 -40.72213 -39.08198 -37.28658 -36.20514 -35.18799 -32.52556 -32.29194 -30.77630 -28.66998 -27.26796 -24.41970 -23.71266 -22.50784 -21.59311 -21.39167 -19.90662 -18.84925 -18.45502 -18.31612 -17.68949 -17.21724 -16.66154 -16.58303 -16.10594 -16.02336 -15.79733 -15.37098 -15.02384 -14.75146 -14.55662 -14.16826 -14.03513 -13.78555 -13.64344 -13.63435 -13.32418 -12.99772 -12.76976 -12.51118 -12.12020 -12.03880 -11.73916 -11.38289 -11.08077 -11.03822 -10.86081 -10.20984 -9.70014 -9.01845 -8.85281 -6.64932 0.40505 0.64599 1.13191 1.23534 1.35730 1.41613 1.50902 1.90220 2.00511 2.41313 2.46859 3.25188 3.29017 3.35073 3.67382 3.89670 3.98590 4.04976 4.15426 4.46310 4.50000 4.67406 4.79459 4.80083 4.83243 4.94800 5.02520 5.16861 5.47313 5.53595 5.61257 5.64019 5.69613 5.89479 5.99887 6.20773 6.45541 6.55242 6.64930 7.08502 7.18861 8.06685 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.005569 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.398571 B = 5026.340884 C = 6003.743612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.275 1.275 6 H -0.230 1.230 7 C -0.478 4.478 8 H 0.051 0.949 9 C 0.052 3.948 10 C -0.232 4.232 11 C 0.168 3.832 12 N -0.645 5.645 13 C 0.488 3.512 14 O -0.560 6.560 15 C 0.124 3.876 16 H 0.168 0.832 17 C -0.121 4.121 18 C -0.142 4.142 19 C 0.509 3.491 20 O -0.587 6.587 21 N -0.715 5.715 22 C -0.203 4.203 23 C -0.088 4.088 24 C -0.052 4.052 25 F -0.169 7.169 26 H 0.295 0.705 27 H 0.108 0.892 28 H 0.435 0.565 29 H 0.062 0.938 30 H 0.159 0.841 31 H 0.108 0.892 32 H 0.150 0.850 33 H 0.410 0.590 34 H 0.168 0.832 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.951 10.402 -4.073 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.174 4.174 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.201 1.201 6 H -0.153 1.153 7 C -0.507 4.507 8 H 0.069 0.931 9 C 0.048 3.952 10 C -0.253 4.253 11 C 0.074 3.926 12 N -0.293 5.293 13 C 0.275 3.725 14 O -0.437 6.437 15 C 0.016 3.984 16 H 0.185 0.815 17 C -0.159 4.159 18 C -0.182 4.182 19 C 0.297 3.703 20 O -0.468 6.468 21 N -0.369 5.369 22 C -0.224 4.224 23 C -0.108 4.108 24 C -0.072 4.072 25 F -0.148 7.148 26 H 0.105 0.895 27 H 0.125 0.875 28 H 0.276 0.724 29 H 0.081 0.919 30 H 0.177 0.823 31 H 0.126 0.874 32 H 0.168 0.832 33 H 0.248 0.752 34 H 0.185 0.815 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.605 10.483 -4.664 22.716 hybrid contribution -1.147 -0.597 -0.026 1.293 sum 18.459 9.885 -4.690 21.458 Atomic orbital electron populations 1.69698 1.09247 1.31580 1.36886 1.26968 0.95649 1.04612 0.90212 0.85400 0.80551 0.75932 0.78546 1.19881 1.20149 1.15299 1.19366 0.92991 0.95192 1.43161 0.93059 1.17761 0.93017 0.92646 0.91731 1.20792 0.95842 1.03874 1.04781 1.17523 0.91591 0.90884 0.92596 1.43243 1.18914 1.39069 1.28069 1.21800 0.85444 0.84188 0.81112 1.90857 1.22434 1.60861 1.69508 1.21955 0.98859 0.94094 0.83518 0.81505 1.22845 1.06539 0.89454 0.97051 1.22433 1.05496 0.97846 0.92379 1.21731 0.77322 0.84346 0.86877 1.90731 1.43941 1.78913 1.33211 1.46198 1.57391 1.08946 1.24321 1.20537 1.00672 0.95833 1.05357 1.20865 0.91429 0.99876 0.98599 1.18215 0.93017 0.94349 1.01654 1.91275 1.87881 1.63448 1.72206 0.89488 0.87474 0.72399 0.91944 0.82317 0.87355 0.83243 0.75168 0.81465 0.83115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.88 13.93 21.82 0.30 -49.57 16 2 C 0.04 2.29 5.47 85.25 0.47 2.76 16 3 Si 0.97 44.84 24.37 68.60 1.67 46.52 16 4 H -0.27 -12.68 6.76 99.48 0.67 -12.00 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.23 -10.00 6.49 99.48 0.65 -9.35 16 7 C -0.48 -28.89 9.30 23.43 0.22 -28.67 16 8 H 0.05 3.40 7.96 -2.91 -0.02 3.38 16 9 C 0.05 2.78 5.19 -21.26 -0.11 2.67 16 10 C -0.23 -10.88 5.52 22.83 0.13 -10.75 16 11 C 0.17 5.89 6.27 38.08 0.24 6.13 16 12 N -0.64 -15.02 5.34 -303.61 -1.62 -16.64 16 13 C 0.49 13.11 6.77 87.66 0.59 13.70 16 14 O -0.56 -23.04 14.21 -3.07 -0.04 -23.09 16 15 C 0.12 1.87 3.93 44.70 0.18 2.05 16 16 H 0.17 0.68 8.14 -2.39 -0.02 0.66 16 17 C -0.12 -1.33 6.67 31.65 0.21 -1.12 16 18 C -0.14 -1.80 6.86 30.59 0.21 -1.59 16 19 C 0.51 12.40 8.43 87.90 0.74 13.14 16 20 O -0.59 -20.24 18.03 -3.04 -0.05 -20.29 16 21 N -0.72 -15.86 5.46 -442.98 -2.42 -18.28 16 22 C -0.20 -6.10 9.96 22.57 0.22 -5.87 16 23 C -0.09 -3.16 10.00 22.24 0.22 -2.94 16 24 C -0.05 -2.47 7.31 22.89 0.17 -2.30 16 25 F -0.17 -8.47 16.76 44.97 0.75 -7.71 16 26 H 0.29 15.56 8.30 -92.71 -0.77 14.79 16 27 H 0.11 5.41 2.55 -2.91 -0.01 5.40 16 28 H 0.44 4.70 8.82 -92.71 -0.82 3.88 16 29 H 0.06 1.09 7.90 -2.39 -0.02 1.07 16 30 H 0.16 0.08 8.14 -2.39 -0.02 0.06 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.15 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.41 9.99 8.94 -92.71 -0.83 9.16 16 34 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -87.82 303.28 1.51 -86.31 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -0.56 Total: 15.55 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 3.48 Total: -12.80 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.74 Total: -84.49 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.10 Total: -43.38 kcal Atomic # 9 Polarization: -8.47 SS G_CDS: 0.75 Total: -7.71 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.67 Total: 46.52 kcal Total: -87.82 1.51 -86.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143130464.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.760 kcal (2) G-P(sol) polarization free energy of solvation -87.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds