Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86797 * 120.00207 * 2 1 4 4 H 1.48496 * 109.47020 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47106 * 300.00333 * 3 2 1 6 6 H 1.48503 * 109.46890 * 60.00636 * 3 2 1 7 7 C 1.39920 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00156 * 153.81430 * 7 2 1 9 9 C 1.41298 * 120.00031 * 333.80819 * 7 2 1 10 10 C 1.40634 * 120.22959 * 329.46302 * 9 7 2 11 11 C 1.38150 * 119.71136 * 179.72170 * 10 9 7 12 12 N 1.40003 * 119.91494 * 180.27567 * 11 10 9 13 13 C 1.34777 * 119.99868 * 31.72906 * 12 11 10 14 14 O 1.21291 * 119.99975 * 4.95150 * 13 12 11 15 15 C 1.50697 * 120.00016 * 184.95555 * 13 12 11 16 16 H 1.08997 * 110.85855 * 59.29292 * 15 13 12 17 17 C 1.54481 * 110.97014 * 183.08964 * 15 13 12 18 18 N 1.46759 * 105.47719 * 143.53378 * 17 15 13 19 19 C 1.34422 * 111.29775 * 342.98198 * 18 17 15 20 20 O 1.21283 * 124.94118 * 180.38178 * 19 18 17 21 21 C 1.51341 * 110.13291 * 0.43755 * 19 18 17 22 22 C 1.39369 * 120.17566 * 0.55026 * 11 10 9 23 23 C 1.38371 * 120.46935 * 359.72771 * 22 11 10 24 24 C 1.38005 * 120.28834 * 359.97438 * 23 22 11 25 25 F 1.35102 * 120.09431 * 180.02562 * 24 23 22 26 26 H 0.96999 * 119.99982 * 174.19759 * 1 2 3 27 27 H 1.08004 * 120.14924 * 359.97438 * 10 9 7 28 28 H 0.96993 * 120.00021 * 211.72792 * 12 11 10 29 29 H 1.09009 * 110.24481 * 262.52932 * 17 15 13 30 30 H 1.08998 * 110.25170 * 24.52779 * 17 15 13 31 31 H 0.97001 * 124.35244 * 162.99988 * 18 17 15 32 32 H 1.08993 * 110.47936 * 257.54750 * 21 19 18 33 33 H 1.08997 * 110.52145 * 134.88209 * 21 19 18 34 34 H 1.07997 * 119.76500 * 179.74287 * 22 11 10 35 35 H 1.08005 * 119.85479 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 3.7026 1.3462 -0.0006 5 1 1.8839 2.3964 -1.2124 6 1 1.8840 2.3963 1.2126 7 6 2.0081 -1.2118 -0.0005 8 1 3.0050 -1.2597 -0.4133 9 6 1.4104 -2.3728 0.5390 10 6 0.4871 -2.2686 1.5947 11 6 -0.0953 -3.4103 2.1103 12 7 -1.0194 -3.3110 3.1574 13 6 -1.8148 -2.2272 3.2535 14 8 -1.7942 -1.3808 2.3850 15 6 -2.7298 -2.0671 4.4402 16 1 -2.1607 -2.0507 5.3696 17 6 -3.5984 -0.7972 4.3012 18 7 -4.9044 -1.1519 4.8688 19 6 -5.0480 -2.4848 4.9678 20 8 -6.0330 -3.0473 5.3970 21 6 -3.8014 -3.1816 4.4670 22 6 0.2390 -4.6613 1.5948 23 6 1.1509 -4.7729 0.5601 24 6 1.7396 -3.6446 0.0264 25 9 2.6291 -3.7581 -0.9842 26 1 -0.4850 -0.8357 -0.0849 27 1 0.2312 -1.2998 1.9979 28 1 -1.0871 -4.0221 3.8135 29 1 -3.1549 0.0263 4.8611 30 1 -3.7047 -0.5259 3.2508 31 1 -5.5776 -0.5074 5.1377 32 1 -3.9632 -3.5794 3.4653 33 1 -3.5073 -3.9772 5.1516 34 1 -0.2172 -5.5498 2.0056 35 1 1.4023 -5.7473 0.1678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143298863.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = -127.769631 kcal Electronic energy + Delta-G solvation = -22880.314260 eV Core-core repulsion = 19176.898481 eV Total energy + Delta-G solvation = -3703.415778 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.23075 -41.94339 -40.68729 -39.00940 -37.26766 -36.30817 -35.04727 -32.76687 -31.43758 -29.77263 -28.67471 -27.12386 -24.90985 -23.44422 -22.50236 -21.61243 -21.00421 -20.02754 -18.79634 -18.35323 -17.98179 -17.63322 -16.98143 -16.68588 -16.07302 -16.01615 -15.80895 -15.72317 -15.26965 -14.88926 -14.68906 -14.55345 -14.17532 -14.10724 -13.93379 -13.59333 -13.30298 -13.04320 -12.70858 -12.54813 -12.44853 -12.15031 -11.98062 -11.43276 -11.22175 -11.09302 -10.76466 -10.64486 -10.17190 -9.65247 -9.28589 -8.70014 -6.49151 0.56789 0.80314 1.46281 1.49000 1.54399 1.70902 1.78571 2.01270 2.32911 2.40935 2.65735 3.12961 3.33501 3.36383 3.73754 3.88861 3.99129 4.15117 4.23402 4.51508 4.57164 4.62505 4.77365 4.89347 4.91563 4.97177 4.99228 5.47116 5.61170 5.62525 5.70961 5.76474 5.86212 5.94321 6.08382 6.25797 6.56943 6.71140 6.85404 7.15155 7.29026 8.06088 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016904 B = 0.004909 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.016229 B = 5702.666269 C = 7143.587025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.004 3.996 3 Si 1.119 2.881 4 H -0.268 1.268 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.559 4.559 8 H 0.063 0.937 9 C 0.055 3.945 10 C -0.209 4.209 11 C 0.165 3.835 12 N -0.652 5.652 13 C 0.508 3.492 14 O -0.540 6.540 15 C -0.104 4.104 16 H 0.157 0.843 17 C 0.114 3.886 18 N -0.717 5.717 19 C 0.519 3.481 20 O -0.580 6.580 21 C -0.139 4.139 22 C -0.231 4.231 23 C -0.094 4.094 24 C -0.080 4.080 25 F -0.173 7.173 26 H 0.285 0.715 27 H 0.110 0.890 28 H 0.426 0.574 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.420 0.580 32 H 0.106 0.894 33 H 0.143 0.857 34 H 0.152 0.848 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.045 -2.688 11.861 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.215 4.215 3 Si 0.936 3.064 4 H -0.192 1.192 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.051 3.949 10 C -0.231 4.231 11 C 0.070 3.930 12 N -0.298 5.298 13 C 0.295 3.705 14 O -0.415 6.415 15 C -0.126 4.126 16 H 0.174 0.826 17 C -0.011 4.011 18 N -0.372 5.372 19 C 0.306 3.694 20 O -0.460 6.460 21 C -0.179 4.179 22 C -0.252 4.252 23 C -0.113 4.113 24 C -0.101 4.101 25 F -0.152 7.152 26 H 0.097 0.903 27 H 0.128 0.872 28 H 0.265 0.735 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.260 0.740 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -5.730 -0.795 11.496 12.870 hybrid contribution 0.170 -1.707 -0.416 1.766 sum -5.560 -2.503 11.080 12.647 Atomic orbital electron populations 1.70473 1.08410 1.33468 1.28591 1.28351 0.95687 1.06982 0.90480 0.82993 0.74711 0.69843 0.78867 1.19199 1.19178 1.18711 1.20587 1.03619 0.95663 1.38762 0.91843 1.17892 0.92845 0.92087 0.92111 1.20913 1.03757 0.97999 1.00409 1.17592 0.90797 0.93777 0.90788 1.43273 1.35635 1.22857 1.28033 1.20952 0.80598 0.81184 0.87760 1.90910 1.66935 1.42145 1.41520 1.22209 0.95484 0.96656 0.98251 0.82556 1.22002 0.81634 0.96963 1.00490 1.46225 1.19489 1.07687 1.63783 1.21120 0.88558 0.83529 0.76210 1.90746 1.35515 1.70634 1.49130 1.22397 0.91282 0.98691 1.05567 1.20349 1.06387 0.95826 1.02661 1.20734 0.97145 0.96374 0.97041 1.18270 1.01607 0.95700 0.94495 1.91230 1.67641 1.96911 1.59462 0.90297 0.87201 0.73490 0.87179 0.91055 0.73992 0.87554 0.83857 0.83078 0.84474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -43.95 12.53 21.82 0.27 -43.68 16 2 C 0.00 0.20 4.88 85.25 0.42 0.62 16 3 Si 1.12 44.91 30.00 68.60 2.06 46.97 16 4 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.56 -31.57 8.63 23.43 0.20 -31.37 16 8 H 0.06 3.65 7.89 -2.91 -0.02 3.62 16 9 C 0.05 2.97 5.17 -21.26 -0.11 2.86 16 10 C -0.21 -10.32 6.68 22.83 0.15 -10.16 16 11 C 0.16 6.42 6.31 38.09 0.24 6.66 16 12 N -0.65 -17.82 5.34 -303.61 -1.62 -19.44 16 13 C 0.51 14.49 6.81 87.66 0.60 15.09 16 14 O -0.54 -21.93 13.09 -3.06 -0.04 -21.97 16 15 C -0.10 -1.77 3.54 -10.48 -0.04 -1.81 16 16 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 17 C 0.11 2.08 7.12 86.83 0.62 2.70 16 18 N -0.72 -12.62 6.24 -459.73 -2.87 -15.49 16 19 C 0.52 11.27 8.43 87.92 0.74 12.01 16 20 O -0.58 -17.46 18.03 -3.04 -0.05 -17.52 16 21 C -0.14 -2.19 6.41 30.61 0.20 -2.00 16 22 C -0.23 -8.25 9.96 22.57 0.22 -8.03 16 23 C -0.09 -3.82 10.00 22.25 0.22 -3.60 16 24 C -0.08 -4.07 7.31 22.90 0.17 -3.91 16 25 F -0.17 -9.02 16.77 44.97 0.75 -8.26 16 26 H 0.28 16.86 6.99 -92.71 -0.65 16.22 16 27 H 0.11 5.86 5.13 -2.91 -0.01 5.85 16 28 H 0.43 7.31 8.81 -92.71 -0.82 6.49 16 29 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.76 7.01 -2.39 -0.02 1.74 16 31 H 0.42 6.09 8.96 -92.71 -0.83 5.26 16 32 H 0.11 1.87 7.89 -2.39 -0.02 1.85 16 33 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 35 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -76.20 307.77 1.78 -74.42 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.35 Total: 25.92 kcal Atomic # 6 Polarization: -24.57 SS G_CDS: 3.63 Total: -20.94 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -4.22 Total: -78.61 kcal Atomic # 8 Polarization: -39.39 SS G_CDS: -0.09 Total: -39.49 kcal Atomic # 9 Polarization: -9.02 SS G_CDS: 0.75 Total: -8.26 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.06 Total: 46.97 kcal Total: -76.20 1.78 -74.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143298863.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.346 kcal (2) G-P(sol) polarization free energy of solvation -76.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds