Wall clock time and date at job start Tue Mar 31 2020 06:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99800 * 2 1 4 4 H 1.48498 * 109.46961 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.46877 * 240.00309 * 3 2 1 6 6 H 1.48496 * 109.46825 * 120.00187 * 3 2 1 7 7 C 1.37878 * 120.00070 * 180.02562 * 2 1 3 8 8 C 1.51269 * 120.84795 * 190.01123 * 7 2 1 9 9 C 1.53227 * 108.53442 * 231.32244 * 8 7 2 10 10 C 1.52963 * 109.40733 * 305.37116 * 9 8 7 11 11 H 1.09003 * 109.41380 * 303.49793 * 10 9 8 12 12 N 1.46497 * 109.41416 * 183.70714 * 10 9 8 13 13 C 1.34776 * 119.99654 * 155.00442 * 12 10 9 14 14 O 1.21605 * 120.00446 * 359.97438 * 13 12 10 15 15 C 1.47385 * 119.99625 * 179.97438 * 13 12 10 16 16 C 1.39976 * 120.61380 * 359.97438 * 15 13 12 17 17 C 1.38334 * 118.37009 * 180.02562 * 16 15 13 18 18 C 1.38398 * 119.52961 * 359.97438 * 17 16 15 19 19 N 1.31820 * 121.22613 * 359.97438 * 18 17 16 20 20 C 1.32503 * 121.76876 * 359.75156 * 19 18 17 21 21 S 1.76203 * 119.83931 * 180.26606 * 20 19 18 22 22 C 1.52963 * 109.81345 * 63.59693 * 10 9 8 23 23 C 1.51265 * 120.85020 * 9.72562 * 7 2 1 24 24 H 0.97003 * 119.99606 * 185.66371 * 1 2 3 25 25 H 1.09000 * 109.62907 * 351.03833 * 8 7 2 26 26 H 1.09004 * 109.62536 * 111.60929 * 8 7 2 27 27 H 1.09000 * 109.48477 * 65.35542 * 9 8 7 28 28 H 1.09004 * 109.48316 * 185.37875 * 9 8 7 29 29 H 0.96996 * 120.00047 * 334.99962 * 12 10 9 30 30 H 1.07990 * 120.81331 * 0.02562 * 16 15 13 31 31 H 1.08008 * 120.23549 * 180.02562 * 17 16 15 32 32 H 1.08001 * 119.38943 * 180.02562 * 18 17 16 33 33 H 1.41005 * 99.99879 * 270.26807 * 21 20 19 34 34 H 1.09000 * 109.47638 * 56.38631 * 22 10 9 35 35 H 1.09000 * 109.47707 * 176.40682 * 22 10 9 36 36 H 1.09000 * 109.62661 * 248.39403 * 23 7 2 37 37 H 1.09004 * 109.62903 * 8.96723 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1028 1.6965 -1.2126 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 6 3.5000 -1.2264 0.2252 9 6 4.1449 -2.0420 -0.9003 10 6 3.4879 -3.4216 -0.9690 11 1 3.5736 -3.9124 0.0004 12 7 4.1632 -4.2324 -1.9852 13 6 4.1343 -5.5773 -1.9027 14 8 3.5481 -6.1178 -0.9845 15 6 4.8132 -6.3931 -2.9254 16 6 5.4912 -5.7845 -3.9880 17 6 6.1118 -6.5947 -4.9219 18 6 6.0470 -7.9701 -4.7822 19 7 5.4044 -8.5250 -3.7738 20 6 4.7972 -7.7970 -2.8481 21 16 3.9587 -8.5920 -1.5179 22 6 2.0101 -3.2744 -1.3354 23 6 1.2839 -2.5057 -0.2205 24 1 -0.4850 -0.8360 0.0829 25 1 3.8942 -0.2103 0.2132 26 1 3.7151 -1.6942 1.1860 27 1 4.0054 -1.5251 -1.8497 28 1 5.2106 -2.1561 -0.7018 29 1 4.6310 -3.8014 -2.7175 30 1 5.5290 -4.7089 -4.0766 31 1 6.6438 -6.1570 -5.7537 32 1 6.5326 -8.6004 -5.5124 33 1 2.6752 -8.7300 -2.0851 34 1 1.9211 -2.7284 -2.2746 35 1 1.5628 -4.2623 -1.4454 36 1 1.2976 -3.0898 0.6997 37 1 0.2537 -2.3119 -0.5191 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147679105.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:25 Heat of formation + Delta-G solvation = -22.473585 kcal Electronic energy + Delta-G solvation = -20832.355127 eV Core-core repulsion = 17699.718504 eV Total energy + Delta-G solvation = -3132.636623 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.66718 -40.26555 -38.45150 -35.63311 -34.18997 -33.03189 -32.44020 -31.52093 -28.82805 -25.78291 -24.89268 -24.01128 -23.27645 -21.57838 -21.43924 -19.63195 -18.76585 -18.22803 -17.90360 -17.11388 -16.75143 -16.17009 -16.10179 -15.64786 -15.32302 -15.24439 -14.77784 -14.56384 -14.26181 -14.09850 -13.56943 -13.47913 -13.44942 -12.89173 -12.48305 -12.31016 -12.22324 -11.95553 -11.89120 -11.46542 -11.38866 -11.18455 -11.07351 -10.74991 -10.55893 -10.38051 -10.25121 -9.89029 -8.59198 -8.55792 -6.16571 -0.70001 -0.09317 0.47183 1.46917 1.55347 1.61722 1.80769 1.84768 2.06248 2.59679 2.68109 3.15095 3.40217 3.59511 3.65063 3.85922 3.96787 4.13307 4.16597 4.39283 4.43877 4.62502 4.76079 4.80459 4.90193 4.94132 4.97067 5.08651 5.16152 5.19322 5.25209 5.40403 5.47105 5.59798 5.70733 6.03424 6.25737 6.53085 6.61627 6.72029 7.24480 7.54795 8.77434 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029020 B = 0.003784 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.610982 B = 7398.458097 C = 7972.805124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.018 4.018 3 Si 1.098 2.902 4 H -0.300 1.300 5 H -0.255 1.255 6 H -0.267 1.267 7 C -0.576 4.576 8 C -0.009 4.009 9 C -0.106 4.106 10 C 0.171 3.829 11 H 0.055 0.945 12 N -0.705 5.705 13 C 0.539 3.461 14 O -0.536 6.536 15 C -0.154 4.154 16 C -0.046 4.046 17 C -0.131 4.131 18 C 0.112 3.888 19 N -0.476 5.476 20 C 0.133 3.867 21 S -0.110 6.110 22 C -0.098 4.098 23 C 0.000 4.000 24 H 0.256 0.744 25 H 0.043 0.957 26 H 0.011 0.989 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.410 0.590 30 H 0.176 0.824 31 H 0.196 0.804 32 H 0.204 0.796 33 H 0.108 0.892 34 H 0.052 0.948 35 H 0.026 0.974 36 H -0.011 1.011 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.867 -10.587 -14.091 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.216 4.216 3 Si 0.921 3.079 4 H -0.227 1.227 5 H -0.180 1.180 6 H -0.193 1.193 7 C -0.595 4.595 8 C -0.047 4.047 9 C -0.144 4.144 10 C 0.066 3.934 11 H 0.074 0.926 12 N -0.358 5.358 13 C 0.324 3.676 14 O -0.413 6.413 15 C -0.163 4.163 16 C -0.073 4.073 17 C -0.151 4.151 18 C -0.050 4.050 19 N -0.186 5.186 20 C -0.115 4.115 21 S 0.047 5.953 22 C -0.137 4.137 23 C -0.038 4.038 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.248 0.752 30 H 0.193 0.807 31 H 0.214 0.786 32 H 0.221 0.779 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 15.959 -10.709 -12.574 22.967 hybrid contribution -0.968 -0.528 -0.953 1.458 sum 14.991 -11.237 -13.528 23.108 Atomic orbital electron populations 1.70916 1.08442 1.30051 1.48672 1.27144 0.96080 1.05578 0.92821 0.83190 0.74285 0.71651 0.78804 1.22675 1.17952 1.19269 1.21566 0.94086 0.92770 1.51086 1.19560 0.94153 0.96364 0.94613 1.21763 0.98465 0.93333 1.00842 1.20592 0.91082 0.91324 0.90367 0.92643 1.46034 1.55051 1.05134 1.29555 1.18321 0.80855 0.82765 0.85619 1.90995 1.43849 1.71475 1.34989 1.21128 1.02685 0.94207 0.98327 1.22291 0.91580 1.02861 0.90585 1.22793 0.97966 0.94129 1.00161 1.23917 0.92514 0.94803 0.93736 1.68314 1.07775 1.40267 1.02257 1.22544 1.00367 0.91021 0.97611 1.87042 1.11627 1.77987 1.18604 1.21782 0.95842 0.97020 0.99104 1.19460 0.95534 0.95339 0.93478 0.93344 0.93883 0.97058 0.91277 0.90762 0.75223 0.80653 0.78645 0.77898 0.92779 0.92973 0.95556 0.99258 0.97251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.57 21.45 0.29 -56.85 16 2 C -0.02 -1.01 5.45 84.65 0.46 -0.55 16 3 Si 1.10 47.48 27.20 68.60 1.87 49.35 16 4 H -0.30 -13.51 7.11 99.48 0.71 -12.81 16 5 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 6 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 7 C -0.58 -29.89 5.48 -16.17 -0.09 -29.98 16 8 C -0.01 -0.37 5.65 30.10 0.17 -0.20 16 9 C -0.11 -3.61 5.40 30.66 0.17 -3.45 16 10 C 0.17 6.25 2.35 44.97 0.11 6.36 16 11 H 0.06 2.36 7.58 -2.39 -0.02 2.34 16 12 N -0.70 -19.75 5.03 -445.97 -2.24 -21.99 16 13 C 0.54 16.85 7.71 86.65 0.67 17.52 16 14 O -0.54 -21.31 13.46 -4.05 -0.05 -21.36 16 15 C -0.15 -3.76 5.91 -19.87 -0.12 -3.87 16 16 C -0.05 -0.64 9.64 22.71 0.22 -0.42 16 17 C -0.13 -1.12 10.09 22.33 0.23 -0.89 16 18 C 0.11 1.41 11.16 84.73 0.95 2.35 16 19 N -0.48 -10.77 10.33 -190.86 -1.97 -12.74 16 20 C 0.13 3.61 7.09 85.17 0.60 4.22 16 21 S -0.11 -3.39 22.91 -56.49 -1.29 -4.69 16 22 C -0.10 -4.24 5.52 30.80 0.17 -4.07 16 23 C 0.00 0.00 5.81 30.25 0.18 0.18 16 24 H 0.26 15.85 6.65 -92.71 -0.62 15.24 16 25 H 0.04 1.72 5.16 -2.39 -0.01 1.71 16 26 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.41 7.95 6.70 -92.71 -0.62 7.33 16 30 H 0.18 1.29 6.51 -2.92 -0.02 1.27 16 31 H 0.20 -0.16 8.06 -2.91 -0.02 -0.19 16 32 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.11 3.16 9.55 73.80 0.70 3.86 16 34 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.01 0.50 6.18 -2.38 -0.01 0.49 16 Total: -1.00 -74.26 314.35 1.66 -72.60 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.36 Total: 8.48 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 3.70 Total: -12.79 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -3.92 Total: -91.58 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.05 Total: -21.36 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 1.87 Total: 49.35 kcal Atomic # 16 Polarization: -3.39 SS G_CDS: -1.29 Total: -4.69 kcal Total: -74.26 1.66 -72.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147679105.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.124 kcal (2) G-P(sol) polarization free energy of solvation -74.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds