Wall clock time and date at job start Tue Mar 31 2020 06:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.52999 * 109.46775 * 184.75828 * 3 2 1 5 5 N 1.46505 * 109.47135 * 184.89678 * 4 3 2 6 6 C 1.36859 * 119.99597 * 95.14681 * 5 4 3 7 7 H 1.08001 * 120.00073 * 229.04717 * 6 5 4 8 8 C 1.38995 * 120.00433 * 48.77387 * 6 5 4 9 9 N 1.31409 * 120.00185 * 200.34879 * 8 6 5 10 10 Si 1.86800 * 119.99568 * 20.35424 * 8 6 5 11 11 H 1.48500 * 109.47223 * 93.57456 * 10 8 6 12 12 H 1.48506 * 109.47014 * 213.57213 * 10 8 6 13 13 H 1.48496 * 109.47254 * 333.56810 * 10 8 6 14 14 C 1.34777 * 119.99994 * 275.14443 * 5 4 3 15 15 O 1.21789 * 120.00151 * 356.31455 * 14 5 4 16 16 C 1.46269 * 119.99735 * 176.30640 * 14 5 4 17 17 C 1.35935 * 124.95952 * 186.30126 * 16 14 5 18 18 C 1.38818 * 115.16156 * 179.79016 * 17 16 14 19 19 N 1.39751 * 139.90543 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.63675 * 0.43002 * 19 18 17 21 21 C 1.36211 * 108.72679 * 180.40335 * 19 18 17 22 22 C 1.34551 * 109.29986 * 0.02562 * 21 19 18 23 23 C 1.38306 * 113.40442 * 0.49586 * 18 17 16 24 24 S 1.75613 * 124.96492 * 6.60862 * 16 14 5 25 25 H 1.09006 * 109.46742 * 60.00315 * 1 2 3 26 26 H 1.09000 * 109.47535 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47706 * 300.00678 * 1 2 3 28 28 H 1.08999 * 109.47085 * 239.99707 * 2 1 3 29 29 H 1.09006 * 109.46742 * 119.99685 * 2 1 3 30 30 H 1.08992 * 109.47334 * 64.75779 * 3 2 1 31 31 H 1.09007 * 109.46974 * 304.75373 * 3 2 1 32 32 H 1.09006 * 109.47562 * 64.89861 * 4 3 2 33 33 H 1.09001 * 109.47321 * 304.89970 * 4 3 2 34 34 H 0.96994 * 119.99890 * 179.97438 * 9 8 6 35 35 H 1.07990 * 122.41985 * 359.97438 * 17 16 14 36 36 H 1.08004 * 125.34868 * 180.02562 * 21 19 18 37 37 H 1.08001 * 126.07168 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4441 -0.1197 5 7 4.0629 2.8171 -0.0023 6 6 4.4868 3.2899 1.2100 7 1 4.1304 4.2427 1.5727 8 6 5.3717 2.5413 1.9772 9 7 5.4743 2.7654 3.2680 10 14 6.4152 1.2168 1.1733 11 1 7.7331 1.7868 0.7947 12 1 6.6159 0.0973 2.1281 13 1 5.7260 0.7133 -0.0419 14 6 4.1032 3.6144 -1.0882 15 8 3.7896 3.1735 -2.1794 16 6 4.5234 5.0091 -0.9562 17 6 4.4858 5.9318 -1.9538 18 6 4.9300 7.1992 -1.6026 19 7 5.1088 8.4643 -2.1688 20 1 4.9039 8.7075 -3.0851 21 6 5.6180 9.2996 -1.2209 22 6 5.7741 8.6223 -0.0688 23 6 5.3456 7.2906 -0.2866 24 16 5.1574 5.7345 0.5121 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7479 1.9311 0.9295 31 1 1.6087 1.9803 -0.8444 32 1 3.8543 1.0344 -1.0876 33 1 3.9928 0.8334 0.6756 34 1 6.0915 2.2427 3.8034 35 1 4.1329 5.6965 -2.9469 36 1 5.8586 10.3418 -1.3707 37 1 6.1577 9.0234 0.8577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149861127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:57 Heat of formation + Delta-G solvation = 29.983317 kcal Electronic energy + Delta-G solvation = -20971.376661 eV Core-core repulsion = 17841.014740 eV Total energy + Delta-G solvation = -3130.361921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48599 -38.91864 -35.70910 -34.14242 -34.10157 -32.11377 -30.33963 -29.10945 -27.20360 -25.08577 -23.98295 -22.23523 -20.87209 -20.62474 -19.99375 -18.88036 -17.74997 -16.78206 -16.17352 -15.33355 -14.80249 -14.51155 -14.43013 -14.18454 -13.89267 -13.42420 -13.23917 -13.08560 -12.86393 -12.65357 -12.31553 -12.14916 -11.78550 -11.46584 -11.20230 -11.13471 -10.87581 -10.70693 -10.66346 -10.50077 -10.05517 -9.83224 -9.60719 -9.17684 -8.98739 -8.80462 -7.78574 -7.36406 -6.88016 -6.65811 -4.41214 1.38157 2.53432 2.96817 3.02711 3.13344 3.16825 3.23149 3.32776 3.55662 4.00681 4.20028 4.32694 4.81945 5.29175 5.35260 5.37736 5.52093 5.60425 5.70215 5.84021 6.06018 6.09248 6.12144 6.17017 6.22307 6.28876 6.39183 6.42745 6.50388 6.63711 6.73880 6.83191 6.91092 7.16171 7.26983 7.34972 7.89718 7.93116 8.00767 8.74203 9.15631 9.53655 10.35364 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005811 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.897349 B = 4817.444847 C = 5792.206792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.130 4.130 4 C 0.117 3.883 5 N -0.460 5.460 6 C -0.355 4.355 7 H 0.117 0.883 8 C 0.089 3.911 9 N -0.832 5.832 10 Si 0.862 3.138 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.246 1.246 14 C 0.551 3.449 15 O -0.588 6.588 16 C -0.201 4.201 17 C -0.082 4.082 18 C 0.024 3.976 19 N -0.572 5.572 20 H 0.409 0.591 21 C 0.029 3.971 22 C -0.171 4.171 23 C -0.269 4.269 24 S 0.279 5.721 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.281 0.719 35 H 0.132 0.868 36 H 0.164 0.836 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.676 4.471 -4.391 6.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.169 4.169 4 C -0.006 4.006 5 N -0.179 5.179 6 C -0.488 4.488 7 H 0.133 0.867 8 C -0.124 4.124 9 N -0.463 5.463 10 Si 0.686 3.314 11 H -0.195 1.195 12 H -0.203 1.203 13 H -0.170 1.170 14 C 0.341 3.659 15 O -0.474 6.474 16 C -0.323 4.323 17 C -0.120 4.120 18 C -0.088 4.088 19 N -0.174 5.174 20 H 0.245 0.755 21 C -0.103 4.103 22 C -0.201 4.201 23 C -0.388 4.388 24 S 0.550 5.450 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.150 0.850 36 H 0.182 0.818 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.463 3.756 -3.370 5.254 hybrid contribution 0.289 0.217 -2.034 2.066 sum -1.174 3.973 -5.404 6.809 Atomic orbital electron populations 1.21746 0.96259 1.00851 1.01726 1.21463 0.95491 0.97395 1.01620 1.21920 0.96320 0.96070 1.02558 1.21706 0.93257 0.84542 1.01071 1.43480 1.55819 1.11216 1.07420 1.18906 1.28223 1.07102 0.94614 0.86699 1.25500 0.95199 0.97179 0.94559 1.69760 1.32929 1.39039 1.04555 0.87141 0.81790 0.81373 0.81069 1.19544 1.20303 1.17009 1.17235 0.80275 0.84452 0.83909 1.90684 1.54571 1.75705 1.26411 1.23820 1.11729 0.98105 0.98611 1.18953 1.04372 0.88750 0.99938 1.18093 1.10282 0.87401 0.93040 1.41826 1.55822 1.07688 1.12097 0.75517 1.21633 1.03811 0.95854 0.89004 1.20047 1.10170 0.91613 0.98283 1.25423 1.09536 1.03770 1.00067 1.85962 1.60178 0.92262 1.06598 0.92962 0.93303 0.92802 0.92346 0.92140 0.91248 0.92072 0.91578 0.91291 0.90838 0.85018 0.81827 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.85 5.93 -26.73 -0.16 -2.00 16 3 C -0.13 -2.43 5.50 -26.73 -0.15 -2.58 16 4 C 0.12 2.50 3.36 -4.04 -0.01 2.49 16 5 N -0.46 -10.91 1.94 -116.43 -0.23 -11.13 16 6 C -0.35 -8.74 7.24 -15.03 -0.11 -8.84 16 7 H 0.12 2.96 5.46 -30.06 -0.16 2.80 16 8 C 0.09 2.19 5.22 -17.45 -0.09 2.10 16 9 N -0.83 -21.11 13.96 55.50 0.77 -20.33 16 10 Si 0.86 19.15 26.46 -169.99 -4.50 14.65 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.25 -5.38 5.26 56.52 0.30 -5.09 16 14 C 0.55 13.40 7.55 -13.03 -0.10 13.30 16 15 O -0.59 -15.10 16.43 5.11 0.08 -15.02 16 16 C -0.20 -4.54 6.25 -37.18 -0.23 -4.77 16 17 C -0.08 -1.68 9.89 -40.19 -0.40 -2.07 16 18 C 0.02 0.45 7.67 -84.01 -0.64 -0.19 16 19 N -0.57 -8.21 6.21 -10.88 -0.07 -8.28 16 20 H 0.41 4.40 8.96 -40.82 -0.37 4.03 16 21 C 0.03 0.39 11.85 -16.91 -0.20 0.19 16 22 C -0.17 -2.77 10.84 -39.61 -0.43 -3.20 16 23 C -0.27 -5.24 7.31 -38.28 -0.28 -5.52 16 24 S 0.28 5.97 18.44 -107.50 -1.98 3.99 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 31 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 32 H 0.07 1.43 7.38 -51.93 -0.38 1.05 16 33 H 0.07 1.45 5.01 -51.93 -0.26 1.19 16 34 H 0.28 6.65 8.31 -40.82 -0.34 6.31 16 35 H 0.13 2.53 8.01 -52.49 -0.42 2.11 16 36 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 37 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -28.99 317.69 -8.20 -37.19 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -4.64 Total: 6.82 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -2.43 Total: -12.68 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.48 Total: -39.75 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: 0.08 Total: -15.02 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.50 Total: 14.65 kcal Atomic # 16 Polarization: 5.97 SS G_CDS: -1.98 Total: 3.99 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.99 -8.20 -37.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149861127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.172 kcal (2) G-P(sol) polarization free energy of solvation -28.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds