Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47001 * 2 1 4 4 C 1.52999 * 109.46775 * 184.75828 * 3 2 1 5 5 N 1.46505 * 109.47135 * 184.89678 * 4 3 2 6 6 C 1.36859 * 119.99597 * 95.14681 * 5 4 3 7 7 H 1.08001 * 120.00073 * 229.04717 * 6 5 4 8 8 C 1.38995 * 120.00433 * 48.77387 * 6 5 4 9 9 N 1.31409 * 120.00185 * 200.34879 * 8 6 5 10 10 Si 1.86800 * 119.99568 * 20.35424 * 8 6 5 11 11 H 1.48500 * 109.47223 * 93.57456 * 10 8 6 12 12 H 1.48506 * 109.47014 * 213.57213 * 10 8 6 13 13 H 1.48496 * 109.47254 * 333.56810 * 10 8 6 14 14 C 1.34777 * 119.99994 * 275.14443 * 5 4 3 15 15 O 1.21789 * 120.00151 * 356.31455 * 14 5 4 16 16 C 1.46269 * 119.99735 * 176.30640 * 14 5 4 17 17 C 1.35935 * 124.95952 * 186.30126 * 16 14 5 18 18 C 1.38818 * 115.16156 * 179.79016 * 17 16 14 19 19 N 1.39751 * 139.90543 * 180.02562 * 18 17 16 20 20 H 0.97001 * 125.63675 * 0.43002 * 19 18 17 21 21 C 1.36211 * 108.72679 * 180.40335 * 19 18 17 22 22 C 1.34551 * 109.29986 * 0.02562 * 21 19 18 23 23 C 1.38306 * 113.40442 * 0.49586 * 18 17 16 24 24 S 1.75613 * 124.96492 * 6.60862 * 16 14 5 25 25 H 1.09006 * 109.46742 * 60.00315 * 1 2 3 26 26 H 1.09000 * 109.47535 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47706 * 300.00678 * 1 2 3 28 28 H 1.08999 * 109.47085 * 239.99707 * 2 1 3 29 29 H 1.09006 * 109.46742 * 119.99685 * 2 1 3 30 30 H 1.08992 * 109.47334 * 64.75779 * 3 2 1 31 31 H 1.09007 * 109.46974 * 304.75373 * 3 2 1 32 32 H 1.09006 * 109.47562 * 64.89861 * 4 3 2 33 33 H 1.09001 * 109.47321 * 304.89970 * 4 3 2 34 34 H 0.96994 * 119.99890 * 179.97438 * 9 8 6 35 35 H 1.07990 * 122.41985 * 359.97438 * 17 16 14 36 36 H 1.08004 * 125.34868 * 180.02562 * 21 19 18 37 37 H 1.08001 * 126.07168 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5653 1.4441 -0.1197 5 7 4.0629 2.8171 -0.0023 6 6 4.4868 3.2899 1.2100 7 1 4.1304 4.2427 1.5727 8 6 5.3717 2.5413 1.9772 9 7 5.4743 2.7654 3.2680 10 14 6.4152 1.2168 1.1733 11 1 7.7331 1.7868 0.7947 12 1 6.6159 0.0973 2.1281 13 1 5.7260 0.7133 -0.0419 14 6 4.1032 3.6144 -1.0882 15 8 3.7896 3.1735 -2.1794 16 6 4.5234 5.0091 -0.9562 17 6 4.4858 5.9318 -1.9538 18 6 4.9300 7.1992 -1.6026 19 7 5.1088 8.4643 -2.1688 20 1 4.9039 8.7075 -3.0851 21 6 5.6180 9.2996 -1.2209 22 6 5.7741 8.6223 -0.0688 23 6 5.3456 7.2906 -0.2866 24 16 5.1574 5.7345 0.5121 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.7479 1.9311 0.9295 31 1 1.6087 1.9803 -0.8444 32 1 3.8543 1.0344 -1.0876 33 1 3.9928 0.8334 0.6756 34 1 6.0915 2.2427 3.8034 35 1 4.1329 5.6965 -2.9469 36 1 5.8586 10.3418 -1.3707 37 1 6.1577 9.0234 0.8577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149861127.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = 13.212302 kcal Electronic energy + Delta-G solvation = -20972.103907 eV Core-core repulsion = 17841.014740 eV Total energy + Delta-G solvation = -3131.089167 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.83138 -40.72975 -37.40505 -35.74651 -35.58823 -33.94843 -31.64413 -30.58384 -28.66672 -26.93502 -25.45205 -23.77256 -22.24381 -22.05019 -21.38816 -20.64545 -19.23545 -18.49342 -17.81929 -17.09280 -16.26557 -16.12823 -16.02484 -15.91020 -15.30966 -14.87807 -14.73792 -14.61578 -14.38562 -14.13116 -13.79525 -13.56942 -13.34838 -13.01124 -12.88846 -12.66407 -12.40636 -12.14599 -12.12304 -11.96535 -11.65337 -11.43387 -11.29709 -10.94378 -10.68834 -10.39277 -9.62061 -8.85438 -8.61726 -8.31513 -6.31952 -0.18370 0.94177 1.21758 1.33682 1.42323 1.57482 1.62154 1.93189 2.17740 2.23100 2.40439 2.64416 2.99065 3.94903 4.06533 4.14659 4.25713 4.27779 4.33282 4.39908 4.52529 4.63277 4.70672 4.78721 4.91162 4.96557 5.03964 5.07207 5.21876 5.24429 5.29934 5.37540 5.42933 5.51440 5.79129 5.99970 6.01491 6.15084 6.82578 6.85306 7.28509 7.67750 8.50294 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016814 B = 0.005811 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.897349 B = 4817.444847 C = 5792.206792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.118 4.118 3 C -0.120 4.120 4 C 0.112 3.888 5 N -0.466 5.466 6 C -0.357 4.357 7 H 0.100 0.900 8 C 0.063 3.937 9 N -0.863 5.863 10 Si 0.900 3.100 11 H -0.278 1.278 12 H -0.263 1.263 13 H -0.245 1.245 14 C 0.545 3.455 15 O -0.613 6.613 16 C -0.246 4.246 17 C -0.060 4.060 18 C -0.005 4.005 19 N -0.554 5.554 20 H 0.430 0.570 21 C 0.079 3.921 22 C -0.208 4.208 23 C -0.268 4.268 24 S 0.236 5.764 25 H 0.051 0.949 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.286 0.714 35 H 0.139 0.861 36 H 0.225 0.775 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 6.315 -5.606 8.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.159 4.159 4 C -0.011 4.011 5 N -0.185 5.185 6 C -0.490 4.490 7 H 0.117 0.883 8 C -0.148 4.148 9 N -0.496 5.496 10 Si 0.723 3.277 11 H -0.205 1.205 12 H -0.187 1.187 13 H -0.168 1.168 14 C 0.336 3.664 15 O -0.501 6.501 16 C -0.366 4.366 17 C -0.098 4.098 18 C -0.117 4.117 19 N -0.157 5.157 20 H 0.270 0.730 21 C -0.055 4.055 22 C -0.238 4.238 23 C -0.389 4.389 24 S 0.506 5.494 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.242 0.758 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.287 5.552 -4.594 7.320 hybrid contribution 0.257 -0.003 -1.773 1.792 sum -1.030 5.549 -6.367 8.508 Atomic orbital electron populations 1.21718 0.94399 1.02395 1.01705 1.21458 0.97109 0.94695 1.02334 1.21819 0.94417 0.98461 1.01168 1.21837 0.95018 0.83526 1.00671 1.43599 1.55886 1.11941 1.07046 1.18836 1.28449 1.07090 0.94593 0.88307 1.25866 0.95669 0.98534 0.94714 1.69786 1.34050 1.40452 1.05312 0.86557 0.80132 0.80215 0.80807 1.20456 1.18708 1.16829 1.17541 0.79845 0.85357 0.83660 1.90634 1.55957 1.76481 1.27055 1.23676 1.15306 0.97941 0.99718 1.19124 1.01936 0.89229 0.99494 1.17987 1.11810 0.88527 0.93346 1.41925 1.54379 1.05988 1.13433 0.73019 1.22556 0.98568 0.97472 0.86920 1.20475 1.12220 0.90354 1.00703 1.25487 1.09399 1.03970 1.00006 1.85826 1.61700 0.94432 1.07482 0.93029 0.90949 0.92844 0.91610 0.91431 0.92534 0.93417 0.92163 0.91101 0.90332 0.84342 0.75841 0.82906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.12 -3.50 5.93 30.59 0.18 -3.32 16 3 C -0.12 -4.60 5.50 30.59 0.17 -4.43 16 4 C 0.11 4.91 3.36 86.38 0.29 5.20 16 5 N -0.47 -22.98 1.94 -640.46 -1.24 -24.22 16 6 C -0.36 -18.35 7.24 84.09 0.61 -17.74 16 7 H 0.10 5.41 5.46 -17.17 -0.09 5.31 16 8 C 0.06 3.17 5.22 84.94 0.44 3.62 16 9 N -0.86 -45.04 13.96 21.67 0.30 -44.74 16 10 Si 0.90 39.97 26.46 68.60 1.82 41.78 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 13 H -0.24 -10.70 5.26 99.48 0.52 -10.17 16 14 C 0.54 27.55 7.55 86.33 0.65 28.21 16 15 O -0.61 -32.56 16.43 -4.63 -0.08 -32.64 16 16 C -0.25 -11.47 6.25 23.82 0.15 -11.32 16 17 C -0.06 -2.43 9.89 21.87 0.22 -2.22 16 18 C 0.00 -0.17 7.67 38.03 0.29 0.12 16 19 N -0.55 -13.50 6.21 -188.34 -1.17 -14.67 16 20 H 0.43 7.13 8.96 -92.71 -0.83 6.30 16 21 C 0.08 1.66 11.85 83.17 0.99 2.64 16 22 C -0.21 -6.05 10.84 22.25 0.24 -5.81 16 23 C -0.27 -10.18 7.31 23.11 0.17 -10.01 16 24 S 0.24 10.48 18.44 -56.49 -1.04 9.44 16 25 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 26 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 32 H 0.06 2.68 7.38 -2.38 -0.02 2.66 16 33 H 0.07 3.03 5.01 -2.39 -0.01 3.02 16 34 H 0.29 13.83 8.31 -92.71 -0.77 13.06 16 35 H 0.14 5.31 8.01 -2.92 -0.02 5.29 16 36 H 0.23 2.08 8.06 -2.91 -0.02 2.05 16 37 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -65.66 317.69 3.70 -61.96 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.01 Total: 21.03 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 5.11 Total: -17.94 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -2.11 Total: -83.62 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.08 Total: -32.64 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 1.82 Total: 41.78 kcal Atomic # 16 Polarization: 10.48 SS G_CDS: -1.04 Total: 9.44 kcal Total: -65.66 3.70 -61.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149861127.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.170 kcal (2) G-P(sol) polarization free energy of solvation -65.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds