Wall clock time and date at job start Tue Mar 31 2020 06:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 H 1.08997 * 109.47134 * 304.99958 * 3 2 1 5 5 C 1.50699 * 109.46958 * 184.99962 * 3 2 1 6 6 H 1.08002 * 119.99878 * 239.99622 * 5 3 2 7 7 C 1.37875 * 120.00101 * 59.99924 * 5 3 2 8 8 N 1.31511 * 119.99932 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99797 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47381 * 90.00157 * 9 7 5 11 11 H 1.48503 * 109.46964 * 210.00280 * 9 7 5 12 12 H 1.48502 * 109.47349 * 329.99562 * 9 7 5 13 13 N 1.46500 * 109.46924 * 64.99897 * 3 2 1 14 14 C 1.34778 * 119.99764 * 274.99622 * 13 3 2 15 15 O 1.21732 * 120.00306 * 0.02562 * 14 13 3 16 16 C 1.46459 * 119.99999 * 180.02562 * 14 13 3 17 17 C 1.37458 * 125.80855 * 179.97438 * 16 14 13 18 18 C 1.40662 * 107.55784 * 180.02562 * 17 16 14 19 19 S 1.76019 * 142.39676 * 179.97438 * 18 17 16 20 20 C 1.75599 * 91.30939 * 180.02562 * 19 18 17 21 21 C 1.50693 * 124.76046 * 180.02562 * 20 19 18 22 22 C 1.32767 * 110.47472 * 359.97438 * 20 19 18 23 23 C 1.38243 * 108.02939 * 359.97438 * 18 17 16 24 24 N 1.37922 * 125.80320 * 0.02562 * 16 14 13 25 25 H 0.96999 * 125.68605 * 359.97438 * 24 16 14 26 26 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47437 * 300.00251 * 1 2 3 28 28 H 1.09006 * 109.46956 * 59.99677 * 1 2 3 29 29 H 1.08999 * 109.47009 * 239.99949 * 2 1 3 30 30 H 1.08995 * 109.46855 * 119.99823 * 2 1 3 31 31 H 0.97000 * 119.99912 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99896 * 95.00401 * 13 3 2 33 33 H 1.08001 * 126.22327 * 0.05607 * 17 16 14 34 34 H 1.09003 * 109.47709 * 269.95060 * 21 20 19 35 35 H 1.09003 * 109.47457 * 29.94938 * 21 20 19 36 36 H 1.08998 * 109.47018 * 149.94889 * 21 20 19 37 37 H 1.08002 * 122.16209 * 180.27170 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3503 -0.7601 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0737 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3424 2.6319 0.4308 16 6 0.0478 3.3197 2.6181 17 6 -1.1571 3.9335 2.8650 18 6 -1.1180 4.4313 4.1800 19 16 -2.0761 5.3081 5.3682 20 6 -0.7772 5.2117 6.5460 21 6 -0.8368 5.7824 7.9394 22 6 0.2643 4.5645 6.0370 23 6 0.1137 4.1138 4.7214 24 7 0.8304 3.4267 3.7487 25 1 1.7307 3.0798 3.8486 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0611 -2.9498 32 1 2.2719 2.1231 1.9977 33 1 -1.9837 4.0177 2.1751 34 1 -0.4692 6.8085 7.9280 35 1 -1.8677 5.7698 8.2935 36 1 -0.2168 5.1817 8.6049 37 1 1.1677 4.3933 6.6035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154008577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:55 Heat of formation + Delta-G solvation = 18.319009 kcal Electronic energy + Delta-G solvation = -20466.341137 eV Core-core repulsion = 17335.473413 eV Total energy + Delta-G solvation = -3130.867723 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19984 -38.78359 -35.95134 -35.14142 -32.57062 -31.38161 -30.73249 -30.30655 -27.41743 -26.10792 -23.27939 -22.47867 -22.03053 -20.39360 -19.51757 -19.27468 -18.64350 -16.71334 -15.75071 -15.50744 -15.32882 -15.11832 -14.39978 -14.32274 -14.23271 -13.57594 -13.51536 -13.34314 -12.79540 -12.71863 -12.34723 -12.10391 -11.85957 -11.60694 -11.31105 -11.09664 -11.05774 -10.88151 -10.81505 -10.39480 -10.25902 -9.71657 -9.63904 -9.36038 -9.12878 -8.58137 -8.07898 -7.89450 -7.60939 -6.19233 -4.29514 0.80303 1.48276 2.02579 2.13695 2.74554 2.93056 3.19407 3.26819 3.28371 3.85304 3.93682 4.30946 4.58143 4.95992 5.04419 5.12255 5.24055 5.26986 5.28117 5.49677 5.69734 5.78921 5.98891 6.06912 6.34894 6.41254 6.53143 6.60388 6.71719 6.98342 7.13749 7.24373 7.32436 7.35345 7.54495 7.64594 7.81406 8.09640 8.49134 8.66790 8.92619 9.37619 10.86063 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.003479 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.162998 B = 8045.823238 C = 8772.719053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.053 0.947 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.880 5.880 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.284 1.284 12 H -0.274 1.274 13 N -0.703 5.703 14 C 0.569 3.431 15 O -0.527 6.527 16 C 0.027 3.973 17 C -0.088 4.088 18 C -0.214 4.214 19 S 0.120 5.880 20 C -0.165 4.165 21 C -0.080 4.080 22 C -0.115 4.115 23 C 0.057 3.943 24 N -0.540 5.540 25 H 0.419 0.581 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.051 0.949 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.266 0.734 32 H 0.383 0.617 33 H 0.154 0.846 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.314 7.820 17.652 20.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.071 0.929 5 C -0.576 4.576 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.517 5.517 9 Si 0.729 3.271 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.350 5.350 14 C 0.354 3.646 15 O -0.405 6.405 16 C -0.088 4.088 17 C -0.119 4.119 18 C -0.335 4.335 19 S 0.380 5.620 20 C -0.283 4.283 21 C -0.138 4.138 22 C -0.148 4.148 23 C -0.061 4.061 24 N -0.142 5.142 25 H 0.258 0.742 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.119 0.881 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.215 0.785 33 H 0.172 0.828 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.094 0.906 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -8.100 8.217 16.732 20.324 hybrid contribution 3.251 -0.891 0.246 3.380 sum -4.850 7.326 16.978 19.116 Atomic orbital electron populations 1.21859 0.98211 0.98282 1.01316 1.21946 0.92735 0.99568 1.02401 1.18874 0.94393 0.89282 0.80496 0.92887 1.21187 0.90521 1.39442 1.06478 0.92166 1.24876 0.98692 0.94697 0.95294 1.69885 1.35208 1.37290 1.09308 0.86444 0.84714 0.78430 0.77494 1.20513 1.20973 1.19884 1.46473 1.14015 1.55733 1.18758 1.16956 0.83263 0.79260 0.85149 1.90849 1.51469 1.59884 1.38249 1.20905 0.92704 1.06980 0.88248 1.20375 0.97176 1.00950 0.93364 1.22600 0.98766 1.11740 1.00350 1.83750 1.16366 1.58910 1.02963 1.23955 0.97408 1.06046 1.00885 1.20326 1.03010 1.00866 0.89612 1.18761 1.00525 1.03198 0.92267 1.18228 0.92377 1.03379 0.92130 1.42061 1.15533 1.46509 1.10114 0.74240 0.95660 0.94298 0.92977 0.88093 0.95027 0.92429 0.78548 0.82798 0.90632 0.91109 0.90560 0.84489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.76 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.27 6.63 2.24 -69.08 -0.15 6.48 16 4 H 0.05 1.51 7.58 -51.93 -0.39 1.11 16 5 C -0.54 -13.82 8.73 -34.44 -0.30 -14.12 16 6 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.15 11.29 55.43 0.63 -23.53 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 N -0.70 -14.16 5.02 -56.31 -0.28 -14.45 16 14 C 0.57 11.40 6.35 -12.95 -0.08 11.31 16 15 O -0.53 -12.23 13.99 5.16 0.07 -12.16 16 16 C 0.03 0.46 7.01 -82.10 -0.58 -0.12 16 17 C -0.09 -1.42 10.60 -38.95 -0.41 -1.84 16 18 C -0.21 -3.12 7.26 -38.67 -0.28 -3.40 16 19 S 0.12 1.38 23.29 -107.50 -2.50 -1.12 16 20 C -0.17 -1.66 6.45 -36.19 -0.23 -1.89 16 21 C -0.08 -0.52 10.35 36.00 0.37 -0.14 16 22 C -0.11 -1.26 10.01 -40.84 -0.41 -1.67 16 23 C 0.06 0.77 7.67 -84.00 -0.64 0.13 16 24 N -0.54 -7.42 6.14 -7.34 -0.05 -7.46 16 25 H 0.42 4.66 8.14 -40.82 -0.33 4.33 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 28 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 29 H 0.10 2.66 5.95 -51.93 -0.31 2.35 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.38 6.57 7.62 -40.82 -0.31 6.26 16 33 H 0.15 2.38 8.06 -52.49 -0.42 1.96 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -30.02 322.15 -9.49 -39.51 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.55 Total: 8.71 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -2.64 Total: -9.52 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.30 Total: -45.44 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.50 Total: -1.12 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.02 -9.49 -39.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154008577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.829 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds