Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47241 * 2 1 4 4 H 1.08997 * 109.47134 * 304.99958 * 3 2 1 5 5 C 1.50699 * 109.46958 * 184.99962 * 3 2 1 6 6 H 1.08002 * 119.99878 * 239.99622 * 5 3 2 7 7 C 1.37875 * 120.00101 * 59.99924 * 5 3 2 8 8 N 1.31511 * 119.99932 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99797 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47381 * 90.00157 * 9 7 5 11 11 H 1.48503 * 109.46964 * 210.00280 * 9 7 5 12 12 H 1.48502 * 109.47349 * 329.99562 * 9 7 5 13 13 N 1.46500 * 109.46924 * 64.99897 * 3 2 1 14 14 C 1.34778 * 119.99764 * 274.99622 * 13 3 2 15 15 O 1.21732 * 120.00306 * 0.02562 * 14 13 3 16 16 C 1.46459 * 119.99999 * 180.02562 * 14 13 3 17 17 C 1.37458 * 125.80855 * 179.97438 * 16 14 13 18 18 C 1.40662 * 107.55784 * 180.02562 * 17 16 14 19 19 S 1.76019 * 142.39676 * 179.97438 * 18 17 16 20 20 C 1.75599 * 91.30939 * 180.02562 * 19 18 17 21 21 C 1.50693 * 124.76046 * 180.02562 * 20 19 18 22 22 C 1.32767 * 110.47472 * 359.97438 * 20 19 18 23 23 C 1.38243 * 108.02939 * 359.97438 * 18 17 16 24 24 N 1.37922 * 125.80320 * 0.02562 * 16 14 13 25 25 H 0.96999 * 125.68605 * 359.97438 * 24 16 14 26 26 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47437 * 300.00251 * 1 2 3 28 28 H 1.09006 * 109.46956 * 59.99677 * 1 2 3 29 29 H 1.08999 * 109.47009 * 239.99949 * 2 1 3 30 30 H 1.08995 * 109.46855 * 119.99823 * 2 1 3 31 31 H 0.97000 * 119.99912 * 180.02562 * 8 7 5 32 32 H 0.96995 * 119.99896 * 95.00401 * 13 3 2 33 33 H 1.08001 * 126.22327 * 0.05607 * 17 16 14 34 34 H 1.09003 * 109.47709 * 269.95060 * 21 20 19 35 35 H 1.09003 * 109.47457 * 29.94938 * 21 20 19 36 36 H 1.08998 * 109.47018 * 149.94889 * 21 20 19 37 37 H 1.08002 * 122.16209 * 180.27170 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3503 -0.7601 11 1 6.3830 0.9223 -2.8172 12 1 6.5570 2.0737 -0.6902 13 7 1.6524 2.0975 1.2518 14 6 0.4351 2.6644 1.3669 15 8 -0.3424 2.6319 0.4308 16 6 0.0478 3.3197 2.6181 17 6 -1.1571 3.9335 2.8650 18 6 -1.1180 4.4313 4.1800 19 16 -2.0761 5.3081 5.3682 20 6 -0.7772 5.2117 6.5460 21 6 -0.8368 5.7824 7.9394 22 6 0.2643 4.5645 6.0370 23 6 0.1137 4.1138 4.7214 24 7 0.8304 3.4267 3.7487 25 1 1.7307 3.0798 3.8486 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8293 -0.0611 -2.9498 32 1 2.2719 2.1231 1.9977 33 1 -1.9837 4.0177 2.1751 34 1 -0.4692 6.8085 7.9280 35 1 -1.8677 5.7698 8.2935 36 1 -0.2168 5.1817 8.6049 37 1 1.1677 4.3933 6.6035 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154008577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = -0.349316 kcal Electronic energy + Delta-G solvation = -20467.150656 eV Core-core repulsion = 17335.473413 eV Total energy + Delta-G solvation = -3131.677243 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.36392 -40.38436 -37.09946 -36.76115 -34.41602 -33.01499 -32.02211 -31.28176 -29.18296 -27.33829 -25.09818 -23.50762 -23.36923 -21.81291 -21.19210 -20.55105 -19.86749 -18.36574 -17.31166 -17.11391 -16.55697 -16.39649 -16.12956 -15.59105 -15.17646 -14.98050 -14.76829 -14.51016 -14.27781 -13.87613 -13.68984 -13.51146 -13.20058 -13.02587 -12.93475 -12.79071 -12.69383 -12.21144 -12.11487 -11.99299 -11.65961 -11.63036 -11.11416 -11.04758 -10.70848 -10.56981 -9.81040 -8.97970 -8.63837 -8.18944 -6.36890 -0.23056 0.54921 0.89833 1.10821 1.43652 1.44507 1.54550 1.76368 1.80984 2.29498 2.35541 2.52288 3.10888 3.75495 3.88453 3.95615 4.36277 4.41597 4.46372 4.54235 4.59178 4.71809 4.78170 4.84731 4.92598 5.02988 5.13353 5.21749 5.26955 5.39141 5.44906 5.46954 5.54323 5.58514 5.75444 5.86871 6.11743 6.34404 6.68402 6.82520 7.24368 7.40046 8.86538 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027016 B = 0.003479 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.162998 B = 8045.823238 C = 8772.719053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.121 4.121 3 C 0.279 3.721 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.971 3.029 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.698 5.698 14 C 0.572 3.428 15 O -0.568 6.568 16 C -0.001 4.001 17 C -0.089 4.089 18 C -0.252 4.252 19 S 0.132 5.868 20 C -0.140 4.140 21 C -0.082 4.082 22 C -0.136 4.136 23 C 0.073 3.927 24 N -0.531 5.531 25 H 0.430 0.570 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.399 0.601 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 8.686 21.155 23.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.022 0.978 5 C -0.589 4.589 6 H 0.090 0.910 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.796 3.204 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.190 1.190 13 N -0.346 5.346 14 C 0.360 3.640 15 O -0.448 6.448 16 C -0.115 4.115 17 C -0.120 4.120 18 C -0.372 4.372 19 S 0.391 5.609 20 C -0.259 4.259 21 C -0.141 4.141 22 C -0.168 4.168 23 C -0.047 4.047 24 N -0.134 5.134 25 H 0.271 0.729 26 H 0.066 0.934 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.233 0.767 33 H 0.166 0.834 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -7.090 9.083 20.267 23.313 hybrid contribution 2.827 -1.041 -0.687 3.089 sum -4.263 8.043 19.580 21.592 Atomic orbital electron populations 1.21702 0.97025 0.99334 1.00277 1.21795 0.93704 0.98953 1.01511 1.18464 0.93910 0.89250 0.80762 0.97832 1.21535 0.91146 1.39323 1.06920 0.90990 1.25754 1.03332 0.94282 0.94934 1.70038 1.37119 1.38079 1.09841 0.85362 0.79026 0.78856 0.77189 1.19607 1.21285 1.18957 1.46158 1.14697 1.55750 1.17978 1.17276 0.82451 0.78476 0.85847 1.90818 1.52511 1.61397 1.40101 1.20203 0.93872 1.09340 0.88133 1.20467 0.96796 1.00453 0.94312 1.22843 1.00472 1.13503 1.00368 1.83741 1.16647 1.58080 1.02393 1.24552 0.95892 1.03653 1.01761 1.20533 1.04390 1.01795 0.87351 1.19050 1.02266 1.04142 0.91315 1.18730 0.91651 1.01589 0.92769 1.41913 1.15819 1.46433 1.09277 0.72907 0.93398 0.94092 0.95237 0.90651 0.93986 0.92477 0.76668 0.83361 0.89049 0.89968 0.88570 0.81580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.51 71.98 0.61 -5.11 16 2 C -0.12 -5.91 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.16 2.24 44.25 0.10 14.26 16 4 H 0.00 0.23 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.38 16 6 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 7 C 0.02 0.93 5.29 84.65 0.45 1.38 16 8 N -0.91 -51.52 11.29 21.45 0.24 -51.28 16 9 Si 0.97 41.33 29.54 68.60 2.03 43.36 16 10 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 13 N -0.70 -28.77 5.02 -450.26 -2.26 -31.03 16 14 C 0.57 23.76 6.35 86.38 0.55 24.31 16 15 O -0.57 -27.84 13.99 -4.45 -0.06 -27.90 16 16 C 0.00 -0.02 7.01 40.14 0.28 0.26 16 17 C -0.09 -2.94 10.60 22.68 0.24 -2.70 16 18 C -0.25 -7.12 7.26 22.86 0.17 -6.95 16 19 S 0.13 2.75 23.29 -56.49 -1.32 1.44 16 20 C -0.14 -2.31 6.45 24.51 0.16 -2.15 16 21 C -0.08 -0.68 10.35 71.23 0.74 0.05 16 22 C -0.14 -2.51 10.01 21.49 0.22 -2.30 16 23 C 0.07 1.83 7.67 38.40 0.29 2.13 16 24 N -0.53 -14.07 6.14 -177.13 -1.09 -15.16 16 25 H 0.43 8.97 8.14 -92.71 -0.75 8.22 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.04 1.82 5.64 -2.39 -0.01 1.80 16 28 H 0.03 1.43 7.84 -2.38 -0.02 1.41 16 29 H 0.08 4.11 5.95 -2.39 -0.01 4.10 16 30 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.27 14.23 8.31 -92.71 -0.77 13.46 16 32 H 0.40 13.65 7.62 -92.71 -0.71 12.94 16 33 H 0.15 4.85 8.06 -2.91 -0.02 4.83 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.17 2.10 8.06 -2.91 -0.02 2.08 16 Total: -1.00 -67.11 322.15 1.39 -65.72 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -0.34 Total: 25.81 kcal Atomic # 6 Polarization: -15.15 SS G_CDS: 4.19 Total: -10.96 kcal Atomic # 7 Polarization: -94.36 SS G_CDS: -3.10 Total: -97.47 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.06 Total: -27.90 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.32 Total: 1.44 kcal Total: -67.11 1.39 -65.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154008577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.371 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds