Wall clock time and date at job start Tue Mar 31 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46690 * 93.70993 * 3 2 1 5 5 C 1.37102 * 120.00104 * 264.08528 * 4 3 2 6 6 H 1.07992 * 119.99806 * 198.06993 * 5 4 3 7 7 C 1.38949 * 119.99745 * 18.06276 * 5 4 3 8 8 N 1.31417 * 119.99794 * 21.02458 * 7 5 4 9 9 Si 1.86799 * 120.00239 * 201.01622 * 7 5 4 10 10 H 1.48503 * 109.47082 * 90.00269 * 9 7 5 11 11 H 1.48495 * 109.47485 * 210.00645 * 9 7 5 12 12 H 1.48500 * 109.47127 * 330.00854 * 9 7 5 13 13 C 1.34770 * 119.99914 * 84.08922 * 4 3 2 14 14 O 1.21294 * 120.00443 * 0.02562 * 13 4 3 15 15 C 1.50705 * 119.99999 * 179.97438 * 13 4 3 16 16 C 1.52997 * 109.47192 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.47344 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47441 * 179.97438 * 17 16 15 19 19 N 1.29027 * 124.92087 * 89.99485 * 18 17 16 20 20 C 1.31771 * 117.13076 * 180.02562 * 19 18 17 21 21 C 1.50700 * 122.75529 * 179.97438 * 20 19 18 22 22 C 1.33642 * 114.49976 * 0.23537 * 20 19 18 23 23 S 1.70976 * 124.91769 * 269.99994 * 18 17 16 24 24 H 4.40637 * 5.51302 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47089 * 333.70906 * 3 2 1 26 26 H 1.08996 * 109.46898 * 213.71106 * 3 2 1 27 27 H 0.97007 * 119.99737 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47117 * 60.00039 * 15 13 4 29 29 H 1.09004 * 109.47182 * 300.00105 * 15 13 4 30 30 H 1.09001 * 109.47293 * 59.99858 * 16 15 13 31 31 H 1.09004 * 109.46908 * 299.99985 * 16 15 13 32 32 H 1.09001 * 109.47356 * 59.99511 * 17 16 15 33 33 H 1.09004 * 109.46791 * 299.99671 * 17 16 15 34 34 H 1.08996 * 109.47619 * 89.99560 * 21 20 19 35 35 H 1.09001 * 109.46671 * 329.99712 * 21 20 19 36 36 H 1.09000 * 109.47624 * 210.00119 * 21 20 19 37 37 H 1.07998 * 126.04076 * 179.77040 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0903 -1.3784 5 6 3.4786 -1.0489 -2.0591 6 1 4.0994 -0.9845 -2.9404 7 6 3.0288 -2.2863 -1.6150 8 7 1.9759 -2.3604 -0.8321 9 14 3.9207 -3.8445 -2.1308 10 1 4.9856 -4.1552 -1.1435 11 1 2.9553 -4.9714 -2.1887 12 1 4.5303 -3.6456 -3.4702 13 6 3.2449 1.2925 -1.9772 14 8 2.9408 2.3005 -1.3749 15 6 3.7477 1.3848 -3.3949 16 6 3.7774 2.8509 -3.8312 17 6 4.2872 2.9445 -5.2707 18 6 4.3159 4.3886 -5.7006 19 7 5.3221 5.1829 -5.5542 20 6 5.1793 6.4195 -5.9864 21 6 6.2716 7.4522 -5.8788 22 6 3.9844 6.6845 -6.5231 23 16 3.0198 5.2117 -6.4528 24 1 -1.0500 0.0002 0.0001 25 1 3.0098 -0.9205 0.4552 26 1 3.0089 0.8557 0.5703 27 1 1.6617 -3.2244 -0.5224 28 1 3.0846 0.8229 -4.0529 29 1 4.7536 0.9687 -3.4515 30 1 4.4407 3.4124 -3.1732 31 1 2.7716 3.2673 -3.7745 32 1 3.6236 2.3831 -5.9284 33 1 5.2929 2.5281 -5.3277 34 1 6.8916 7.4200 -6.7747 35 1 6.8863 7.2408 -5.0038 36 1 5.8271 8.4425 -5.7799 37 1 3.6669 7.6331 -6.9302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155223090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:08 Heat of formation + Delta-G solvation = 58.949908 kcal Electronic energy + Delta-G solvation = -20031.022212 eV Core-core repulsion = 16901.916377 eV Total energy + Delta-G solvation = -3129.105835 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.88912 -38.68784 -35.43858 -34.52674 -32.03503 -31.69593 -31.23982 -28.56006 -27.58160 -26.29801 -24.73599 -23.12120 -21.18149 -19.70396 -19.11298 -17.78156 -17.55195 -16.52853 -16.02285 -15.36746 -15.04469 -14.91303 -14.40369 -14.27146 -13.92800 -13.50234 -13.23787 -13.04875 -12.69712 -12.47329 -12.34737 -11.95166 -11.66891 -11.46574 -11.35048 -11.26160 -11.09747 -11.05864 -10.49309 -10.43124 -10.27116 -9.61572 -9.40467 -9.34624 -9.30490 -8.71898 -8.69536 -8.39582 -7.91251 -6.39345 -3.96755 0.69349 1.36446 1.74708 2.75696 3.08622 3.19509 3.21005 3.74065 3.96693 4.04830 4.13607 4.30061 4.81228 4.96447 5.00892 5.06195 5.15970 5.26005 5.41874 5.50731 5.54394 5.65523 5.70939 5.82591 5.94277 5.99646 6.19037 6.21422 6.40149 6.62309 6.73018 6.76461 6.88279 7.19381 7.37133 7.67710 7.76237 8.29912 9.00206 9.03127 9.44293 9.86191 10.60240 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.003344 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.236782 B = 8370.331655 C = 8948.917012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.098 4.098 3 C 0.241 3.759 4 N -0.440 5.440 5 C -0.346 4.346 6 H 0.102 0.898 7 C 0.038 3.962 8 N -0.850 5.850 9 Si 0.918 3.082 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.460 3.540 14 O -0.605 6.605 15 C -0.117 4.117 16 C -0.092 4.092 17 C -0.048 4.048 18 C 0.073 3.927 19 N -0.476 5.476 20 C 0.068 3.932 21 C -0.078 4.078 22 C -0.276 4.276 23 S 0.114 5.886 24 H 0.197 0.803 25 H 0.103 0.897 26 H 0.066 0.934 27 H 0.270 0.730 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 10.745 -10.220 15.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.099 4.099 3 C 0.118 3.882 4 N -0.158 5.158 5 C -0.473 4.473 6 H 0.120 0.880 7 C -0.169 4.169 8 N -0.486 5.486 9 Si 0.744 3.256 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.249 3.751 14 O -0.492 6.492 15 C -0.157 4.157 16 C -0.132 4.132 17 C -0.089 4.089 18 C -0.205 4.205 19 N -0.191 5.191 20 C -0.064 4.064 21 C -0.137 4.137 22 C -0.415 4.415 23 S 0.370 5.630 24 H 0.214 0.786 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.222 10.572 -9.898 14.836 hybrid contribution 0.610 -0.447 -0.271 0.803 sum 3.832 10.124 -10.169 14.852 Atomic orbital electron populations 1.24171 0.95310 1.07282 1.02625 1.23152 0.94353 0.94577 0.97826 1.18038 0.84231 1.01120 0.84764 1.43703 1.55800 1.05505 1.10783 1.19624 1.31221 0.83529 1.12955 0.88037 1.25290 0.94843 0.99450 0.97275 1.70126 1.19023 1.25928 1.33560 0.86082 0.79222 0.81103 0.79175 1.20262 1.21074 1.19403 1.20202 0.83023 0.83413 0.88439 1.90545 1.56203 1.35798 1.66615 1.21342 1.02615 0.96018 0.95687 1.21295 1.02148 0.97197 0.92561 1.20451 1.04152 0.86032 0.98291 1.27185 0.91756 1.01591 0.99955 1.66142 1.29674 1.03053 1.20231 1.20326 0.95442 0.92143 0.98497 1.20344 0.95339 0.94790 1.03250 1.26739 0.98060 1.03443 1.13227 1.84043 1.20018 1.03179 1.55790 0.78584 0.87908 0.91633 0.91951 0.89647 0.89950 0.90977 0.91430 0.89501 0.88614 0.90795 0.90514 0.90886 0.80945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.28 -6.36 19.25 29.55 0.57 -5.79 16 2 C -0.10 -2.45 11.52 -37.12 -0.43 -2.87 16 3 C 0.24 5.92 5.06 -6.83 -0.03 5.88 16 4 N -0.44 -10.95 2.60 -117.93 -0.31 -11.26 16 5 C -0.35 -8.46 9.12 -14.93 -0.14 -8.59 16 6 H 0.10 2.30 6.57 -52.49 -0.34 1.96 16 7 C 0.04 0.92 4.87 -17.47 -0.09 0.84 16 8 N -0.85 -21.81 9.47 55.50 0.53 -21.29 16 9 Si 0.92 18.85 29.60 -169.99 -5.03 13.81 16 10 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 13 C 0.46 10.96 7.57 -10.99 -0.08 10.88 16 14 O -0.61 -15.92 15.66 5.54 0.09 -15.83 16 15 C -0.12 -2.17 4.16 -27.88 -0.12 -2.29 16 16 C -0.09 -1.54 4.49 -26.73 -0.12 -1.66 16 17 C -0.05 -0.65 5.80 -27.89 -0.16 -0.81 16 18 C 0.07 1.03 6.64 -13.46 -0.09 0.94 16 19 N -0.48 -7.09 10.53 -8.06 -0.08 -7.17 16 20 C 0.07 0.85 6.74 -84.23 -0.57 0.29 16 21 C -0.08 -0.71 10.31 36.01 0.37 -0.34 16 22 C -0.28 -3.06 11.13 29.12 0.32 -2.73 16 23 S 0.11 1.36 23.18 -107.50 -2.49 -1.14 16 24 H 0.20 3.71 7.80 -54.09 -0.42 3.29 16 25 H 0.10 2.53 6.47 -51.93 -0.34 2.20 16 26 H 0.07 1.55 7.61 -51.93 -0.39 1.15 16 27 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 28 H 0.09 1.54 8.10 -51.93 -0.42 1.12 16 29 H 0.08 1.42 7.68 -51.93 -0.40 1.02 16 30 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 31 H 0.07 1.20 8.10 -51.93 -0.42 0.78 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 37 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 336.51 15.07 5.07 5.07 Total: -1.00 -30.66 336.51 -7.62 -38.28 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.83 Total: 5.79 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: -0.56 Total: -6.27 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.13 Total: -39.71 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.09 Total: -15.83 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.81 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.66 -7.62 -38.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155223090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.228 kcal (2) G-P(sol) polarization free energy of solvation -30.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds