Wall clock time and date at job start Tue Mar 31 2020 06:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46690 * 93.70993 * 3 2 1 5 5 C 1.37102 * 120.00104 * 264.08528 * 4 3 2 6 6 H 1.07992 * 119.99806 * 198.06993 * 5 4 3 7 7 C 1.38949 * 119.99745 * 18.06276 * 5 4 3 8 8 N 1.31417 * 119.99794 * 21.02458 * 7 5 4 9 9 Si 1.86799 * 120.00239 * 201.01622 * 7 5 4 10 10 H 1.48503 * 109.47082 * 90.00269 * 9 7 5 11 11 H 1.48495 * 109.47485 * 210.00645 * 9 7 5 12 12 H 1.48500 * 109.47127 * 330.00854 * 9 7 5 13 13 C 1.34770 * 119.99914 * 84.08922 * 4 3 2 14 14 O 1.21294 * 120.00443 * 0.02562 * 13 4 3 15 15 C 1.50705 * 119.99999 * 179.97438 * 13 4 3 16 16 C 1.52997 * 109.47192 * 180.02562 * 15 13 4 17 17 C 1.52998 * 109.47344 * 180.02562 * 16 15 13 18 18 C 1.50694 * 109.47441 * 179.97438 * 17 16 15 19 19 N 1.29027 * 124.92087 * 89.99485 * 18 17 16 20 20 C 1.31771 * 117.13076 * 180.02562 * 19 18 17 21 21 C 1.50700 * 122.75529 * 179.97438 * 20 19 18 22 22 C 1.33642 * 114.49976 * 0.23537 * 20 19 18 23 23 S 1.70976 * 124.91769 * 269.99994 * 18 17 16 24 24 H 4.40637 * 5.51302 * 180.02562 * 4 1 2 25 25 H 1.08997 * 109.47089 * 333.70906 * 3 2 1 26 26 H 1.08996 * 109.46898 * 213.71106 * 3 2 1 27 27 H 0.97007 * 119.99737 * 179.97438 * 8 7 5 28 28 H 1.09001 * 109.47117 * 60.00039 * 15 13 4 29 29 H 1.09004 * 109.47182 * 300.00105 * 15 13 4 30 30 H 1.09001 * 109.47293 * 59.99858 * 16 15 13 31 31 H 1.09004 * 109.46908 * 299.99985 * 16 15 13 32 32 H 1.09001 * 109.47356 * 59.99511 * 17 16 15 33 33 H 1.09004 * 109.46791 * 299.99671 * 17 16 15 34 34 H 1.08996 * 109.47619 * 89.99560 * 21 20 19 35 35 H 1.09001 * 109.46671 * 329.99712 * 21 20 19 36 36 H 1.09000 * 109.47624 * 210.00119 * 21 20 19 37 37 H 1.07998 * 126.04076 * 179.77040 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1342 0.0903 -1.3784 5 6 3.4786 -1.0489 -2.0591 6 1 4.0994 -0.9845 -2.9404 7 6 3.0288 -2.2863 -1.6150 8 7 1.9759 -2.3604 -0.8321 9 14 3.9207 -3.8445 -2.1308 10 1 4.9856 -4.1552 -1.1435 11 1 2.9553 -4.9714 -2.1887 12 1 4.5303 -3.6456 -3.4702 13 6 3.2449 1.2925 -1.9772 14 8 2.9408 2.3005 -1.3749 15 6 3.7477 1.3848 -3.3949 16 6 3.7774 2.8509 -3.8312 17 6 4.2872 2.9445 -5.2707 18 6 4.3159 4.3886 -5.7006 19 7 5.3221 5.1829 -5.5542 20 6 5.1793 6.4195 -5.9864 21 6 6.2716 7.4522 -5.8788 22 6 3.9844 6.6845 -6.5231 23 16 3.0198 5.2117 -6.4528 24 1 -1.0500 0.0002 0.0001 25 1 3.0098 -0.9205 0.4552 26 1 3.0089 0.8557 0.5703 27 1 1.6617 -3.2244 -0.5224 28 1 3.0846 0.8229 -4.0529 29 1 4.7536 0.9687 -3.4515 30 1 4.4407 3.4124 -3.1732 31 1 2.7716 3.2673 -3.7745 32 1 3.6236 2.3831 -5.9284 33 1 5.2929 2.5281 -5.3277 34 1 6.8916 7.4200 -6.7747 35 1 6.8863 7.2408 -5.0038 36 1 5.8271 8.4425 -5.7799 37 1 3.6669 7.6331 -6.9302 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155223090.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:08 Heat of formation + Delta-G solvation = 41.974614 kcal Electronic energy + Delta-G solvation = -20031.758316 eV Core-core repulsion = 16901.916377 eV Total energy + Delta-G solvation = -3129.841939 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86783 -40.50473 -37.17184 -35.93265 -33.81247 -33.30640 -32.65974 -29.85967 -28.50346 -27.99122 -26.51912 -24.39041 -22.40319 -20.94323 -20.64374 -19.49269 -18.68336 -18.23504 -17.82493 -16.63204 -16.39810 -16.22262 -15.93104 -15.79283 -15.46061 -14.69813 -14.52293 -14.31592 -13.90711 -13.82584 -13.61534 -13.41428 -13.26885 -12.83646 -12.68868 -12.64632 -12.60096 -12.21145 -12.16137 -12.03506 -11.66365 -11.21522 -11.18855 -10.62120 -10.60347 -10.36372 -10.28512 -9.82831 -9.60471 -8.24377 -5.88399 -0.25040 0.44812 0.82421 1.45307 1.53167 1.62786 1.80189 1.91621 2.15789 2.35147 2.42243 3.04549 3.13711 3.27756 3.89585 3.92038 4.08667 4.13696 4.27183 4.35082 4.43108 4.59977 4.61495 4.74547 4.77795 4.83682 4.85460 4.90534 4.97054 5.03937 5.23140 5.34922 5.39157 5.40906 5.51017 5.81614 6.41317 6.82268 7.12449 7.15063 7.57319 7.99331 8.75322 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021781 B = 0.003344 C = 0.003128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.236782 B = 8370.331655 C = 8948.917012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.145 4.145 3 C 0.241 3.759 4 N -0.450 5.450 5 C -0.363 4.363 6 H 0.119 0.881 7 C -0.003 4.003 8 N -0.879 5.879 9 Si 0.988 3.012 10 H -0.277 1.277 11 H -0.290 1.290 12 H -0.255 1.255 13 C 0.444 3.556 14 O -0.639 6.639 15 C -0.106 4.106 16 C -0.078 4.078 17 C -0.039 4.039 18 C 0.045 3.955 19 N -0.504 5.504 20 C 0.042 3.958 21 C -0.075 4.075 22 C -0.265 4.265 23 S 0.132 5.868 24 H 0.235 0.765 25 H 0.095 0.905 26 H 0.062 0.938 27 H 0.269 0.731 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 10.841 -12.202 16.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.147 4.147 3 C 0.118 3.882 4 N -0.168 5.168 5 C -0.490 4.490 6 H 0.136 0.864 7 C -0.206 4.206 8 N -0.515 5.515 9 Si 0.812 3.188 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.178 1.178 13 C 0.235 3.765 14 O -0.528 6.528 15 C -0.146 4.146 16 C -0.118 4.118 17 C -0.080 4.080 18 C -0.232 4.232 19 N -0.220 5.220 20 C -0.090 4.090 21 C -0.134 4.134 22 C -0.404 4.404 23 S 0.387 5.613 24 H 0.251 0.749 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.115 0.885 29 H 0.118 0.882 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 3.364 10.670 -11.890 16.326 hybrid contribution 0.486 -0.400 0.382 0.736 sum 3.850 10.271 -11.508 15.898 Atomic orbital electron populations 1.25108 0.96355 1.05419 1.00815 1.23541 0.95199 0.96333 0.99605 1.17945 0.84644 1.00397 0.85166 1.43967 1.55722 1.06190 1.10887 1.20073 1.31634 0.83597 1.13680 0.86370 1.26138 0.95127 1.02188 0.97192 1.70252 1.20240 1.26411 1.34623 0.85007 0.77665 0.76824 0.79341 1.20229 1.21660 1.17850 1.21127 0.82535 0.82638 0.90187 1.90509 1.57623 1.36763 1.67886 1.21324 1.03394 0.97550 0.92324 1.21098 1.00838 0.95370 0.94513 1.20340 1.04870 0.86650 0.96131 1.27219 0.92710 1.01891 1.01418 1.66157 1.30696 1.04262 1.20843 1.20851 0.96982 0.92082 0.99074 1.20433 0.94675 0.94947 1.03392 1.27165 0.97188 1.04204 1.11830 1.83922 1.19115 1.03404 1.54860 0.74863 0.88747 0.92050 0.92156 0.88550 0.88184 0.93298 0.92984 0.87355 0.87924 0.89518 0.91535 0.88619 0.77834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.80 19.25 74.32 1.43 -10.37 16 2 C -0.15 -7.39 11.52 31.13 0.36 -7.03 16 3 C 0.24 12.22 5.06 84.57 0.43 12.65 16 4 N -0.45 -22.70 2.60 -645.41 -1.68 -24.37 16 5 C -0.36 -17.57 9.12 84.04 0.77 -16.81 16 6 H 0.12 5.17 6.57 -2.91 -0.02 5.15 16 7 C 0.00 -0.13 4.87 84.93 0.41 0.28 16 8 N -0.88 -45.18 9.47 21.66 0.21 -44.98 16 9 Si 0.99 37.92 29.60 68.60 2.03 39.95 16 10 H -0.28 -10.55 7.11 99.48 0.71 -9.84 16 11 H -0.29 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.25 -9.12 7.11 99.48 0.71 -8.42 16 13 C 0.44 21.48 7.57 87.66 0.66 22.15 16 14 O -0.64 -34.61 15.66 -3.07 -0.05 -34.66 16 15 C -0.11 -3.90 4.16 29.85 0.12 -3.77 16 16 C -0.08 -2.62 4.49 30.59 0.14 -2.48 16 17 C -0.04 -1.01 5.80 29.85 0.17 -0.84 16 18 C 0.05 1.22 6.64 88.52 0.59 1.81 16 19 N -0.50 -14.70 10.53 -179.41 -1.89 -16.58 16 20 C 0.04 0.98 6.74 41.52 0.28 1.26 16 21 C -0.08 -1.24 10.31 71.24 0.73 -0.51 16 22 C -0.27 -5.29 11.13 66.78 0.74 -4.54 16 23 S 0.13 2.93 23.18 -56.49 -1.31 1.62 16 24 H 0.23 8.32 7.80 -4.42 -0.03 8.29 16 25 H 0.09 4.83 6.47 -2.39 -0.02 4.81 16 26 H 0.06 3.05 7.61 -2.39 -0.02 3.03 16 27 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 28 H 0.10 3.34 8.10 -2.39 -0.02 3.32 16 29 H 0.10 3.31 7.68 -2.39 -0.02 3.29 16 30 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.05 1.87 8.10 -2.39 -0.02 1.85 16 32 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 36 H 0.10 1.10 8.12 -2.39 -0.02 1.08 16 37 H 0.20 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -66.60 336.51 5.22 -61.38 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: 1.07 Total: 25.85 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: 6.84 Total: -8.21 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.36 Total: -85.93 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.05 Total: -34.66 kcal Atomic # 14 Polarization: 37.92 SS G_CDS: 2.03 Total: 39.95 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -1.31 Total: 1.62 kcal Total: -66.60 5.22 -61.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155223090.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.352 kcal (2) G-P(sol) polarization free energy of solvation -66.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds