Wall clock time and date at job start Tue Mar 31 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86809 * 119.99936 * 2 1 4 4 H 1.48497 * 109.46954 * 274.66218 * 3 2 1 5 5 H 1.48499 * 109.46834 * 34.65634 * 3 2 1 6 6 H 1.48499 * 109.47293 * 154.66060 * 3 2 1 7 7 C 1.39919 * 120.00460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00648 * 162.28946 * 7 2 1 9 9 C 1.41326 * 119.99540 * 342.28793 * 7 2 1 10 10 C 1.40819 * 120.22811 * 335.13263 * 9 7 2 11 11 C 1.37533 * 119.90831 * 179.97438 * 10 9 7 12 12 C 1.38663 * 120.38706 * 359.72279 * 11 10 9 13 13 C 1.39051 * 120.46414 * 0.55531 * 12 11 10 14 14 N 1.39894 * 119.95909 * 179.71889 * 13 12 11 15 15 C 1.46500 * 120.00144 * 359.72769 * 14 13 12 16 16 H 1.09000 * 109.57107 * 35.15659 * 15 14 13 17 17 C 1.53512 * 109.47678 * 155.51538 * 15 14 13 18 18 C 1.53241 * 108.43152 * 175.71792 * 17 15 14 19 19 C 1.50586 * 109.16144 * 304.24547 * 18 17 15 20 20 O 1.21226 * 119.36018 * 209.09140 * 19 18 17 21 21 N 1.34146 * 121.28141 * 29.11714 * 19 18 17 22 22 C 1.34142 * 122.58341 * 359.40902 * 21 19 18 23 23 O 1.21228 * 119.35451 * 180.57124 * 22 21 19 24 24 C 1.38624 * 120.07967 * 359.44606 * 13 12 11 25 25 F 1.35101 * 120.19436 * 180.29169 * 24 13 12 26 26 H 0.97003 * 119.99849 * 359.97438 * 1 2 3 27 27 H 1.08004 * 120.05148 * 359.97438 * 10 9 7 28 28 H 1.08007 * 119.80879 * 180.02562 * 11 10 9 29 29 H 1.08002 * 119.76913 * 180.27656 * 12 11 10 30 30 H 0.97003 * 119.99732 * 179.72987 * 14 13 12 31 31 H 1.09000 * 109.80376 * 55.96616 * 17 15 14 32 32 H 1.09005 * 109.72196 * 295.42261 * 17 15 14 33 33 H 1.08997 * 109.52118 * 184.33729 * 18 17 15 34 34 H 1.09003 * 109.57164 * 64.17781 * 18 17 15 35 35 H 0.96993 * 118.70370 * 179.43424 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.3914 2.1034 -1.3954 5 1 1.4926 2.6223 0.7962 6 1 3.5859 1.4139 0.5992 7 6 2.0082 -1.2117 -0.0005 8 1 3.0498 -1.2338 -0.2851 9 6 1.3518 -2.4068 0.3713 10 6 0.2240 -2.3637 1.2134 11 6 -0.4101 -3.5306 1.5707 12 6 0.0511 -4.7514 1.1018 13 6 1.1668 -4.8128 0.2741 14 7 1.6265 -6.0506 -0.1880 15 6 0.9362 -7.2816 0.2048 16 1 -0.1346 -7.0917 0.2798 17 6 1.1965 -8.3716 -0.8443 18 6 0.5551 -9.6755 -0.3577 19 6 1.0938 -10.0117 1.0077 20 8 1.1636 -11.1726 1.3498 21 7 1.4973 -9.0516 1.8531 22 6 1.4590 -7.7483 1.5376 23 8 1.8484 -6.9302 2.3430 24 6 1.8206 -3.6485 -0.0981 25 9 2.9013 -3.7050 -0.9070 26 1 -0.4850 0.8401 0.0004 27 1 -0.1427 -1.4155 1.5783 28 1 -1.2752 -3.4957 2.2163 29 1 -0.4571 -5.6613 1.3851 30 1 2.4024 -6.0938 -0.7686 31 1 2.2697 -8.5156 -0.9687 32 1 0.7538 -8.0789 -1.7964 33 1 0.7948 -10.4806 -1.0523 34 1 -0.5265 -9.5519 -0.3023 35 1 1.8303 -9.3099 2.7267 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167569030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:26 Heat of formation + Delta-G solvation = -95.313677 kcal Electronic energy + Delta-G solvation = -22931.973595 eV Core-core repulsion = 19229.965212 eV Total energy + Delta-G solvation = -3702.008382 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.13465 -41.51813 -39.01176 -37.57561 -36.03638 -34.96226 -33.65068 -32.39616 -29.57590 -28.80648 -26.25246 -25.38199 -24.03266 -23.06680 -20.96801 -20.71693 -19.31430 -17.85736 -17.55994 -17.17306 -16.43431 -16.17132 -15.81864 -15.18873 -14.95766 -14.92294 -14.53748 -14.44393 -13.95932 -13.93124 -13.20960 -13.09759 -12.87844 -12.53891 -12.19573 -11.82929 -11.73906 -11.38228 -11.30105 -11.02489 -10.97201 -10.57715 -10.49820 -10.30708 -10.25531 -9.89586 -9.59202 -9.39851 -8.96430 -7.40380 -6.84803 -6.42778 -4.41862 1.44560 2.60807 2.70441 2.71388 2.99505 3.05937 3.11102 3.20493 3.67623 3.87219 3.92057 4.32502 4.42241 4.58149 4.65455 4.81918 5.08966 5.31387 5.47721 5.58086 5.63029 5.89913 5.93568 6.15239 6.57224 6.68749 6.82083 6.92361 7.13779 7.14949 7.29392 7.49297 7.66729 7.81193 7.97497 8.06069 8.21180 8.28110 8.59385 8.76530 8.90822 10.11115 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037891 B = 0.003709 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.787827 B = 7547.857626 C = 7756.622313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.452 4.452 8 H 0.082 0.918 9 C 0.117 3.883 10 C -0.177 4.177 11 C -0.079 4.079 12 C -0.270 4.270 13 C 0.205 3.795 14 N -0.735 5.735 15 C 0.149 3.851 16 H 0.121 0.879 17 C -0.132 4.132 18 C -0.138 4.138 19 C 0.525 3.475 20 O -0.515 6.515 21 N -0.677 5.677 22 C 0.489 3.511 23 O -0.464 6.464 24 C -0.089 4.089 25 F -0.167 7.167 26 H 0.282 0.718 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -12.682 -1.958 12.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.481 4.481 8 H 0.100 0.900 9 C 0.113 3.887 10 C -0.198 4.198 11 C -0.098 4.098 12 C -0.293 4.293 13 C 0.107 3.893 14 N -0.369 5.369 15 C 0.037 3.963 16 H 0.139 0.861 17 C -0.170 4.170 18 C -0.178 4.178 19 C 0.314 3.686 20 O -0.389 6.389 21 N -0.344 5.344 22 C 0.273 3.727 23 O -0.331 6.331 24 C -0.113 4.113 25 F -0.146 7.146 26 H 0.093 0.907 27 H 0.140 0.860 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.235 0.765 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.461 -12.647 -1.522 12.821 hybrid contribution 0.939 0.557 0.191 1.108 sum -0.522 -12.090 -1.331 12.174 Atomic orbital electron populations 1.69844 1.07609 1.29423 1.34162 1.25906 0.94738 1.01403 0.92032 0.86260 0.80833 0.80328 0.79144 1.19461 1.19917 1.18295 1.19504 0.98318 0.90945 1.39354 0.90031 1.17396 0.91728 0.90263 0.89345 1.21029 0.99407 0.97153 1.02176 1.20452 0.98241 0.92545 0.98568 1.19611 1.01906 0.96795 1.10996 1.17278 0.94099 0.82517 0.95382 1.43952 1.35243 1.01258 1.56482 1.20769 0.99700 0.86746 0.89074 0.86129 1.22073 1.02851 0.92132 0.99927 1.21886 1.03193 0.99921 0.92824 1.20990 0.75497 0.84735 0.87341 1.90774 1.51667 1.19250 1.77210 1.45118 1.60653 1.08513 1.20101 1.22409 0.77773 0.80910 0.91564 1.90846 1.41045 1.51668 1.49553 1.17234 0.93905 0.93201 1.06961 1.91206 1.53948 1.97131 1.72353 0.90707 0.85992 0.88914 0.89275 0.76550 0.90014 0.87836 0.86494 0.86704 0.75401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.83 10.97 55.55 0.61 -19.22 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 7 C -0.45 -12.17 8.78 -37.78 -0.33 -12.50 16 8 H 0.08 2.18 7.74 -52.49 -0.41 1.77 16 9 C 0.12 3.13 5.57 -106.78 -0.60 2.54 16 10 C -0.18 -4.53 8.69 -38.86 -0.34 -4.87 16 11 C -0.08 -1.80 10.01 -39.68 -0.40 -2.20 16 12 C -0.27 -5.81 8.65 -39.12 -0.34 -6.15 16 13 C 0.21 4.47 6.19 -83.73 -0.52 3.95 16 14 N -0.74 -12.29 5.05 -53.06 -0.27 -12.56 16 15 C 0.15 1.84 2.41 -68.88 -0.17 1.67 16 16 H 0.12 1.43 6.48 -51.93 -0.34 1.09 16 17 C -0.13 -1.02 5.57 -26.34 -0.15 -1.17 16 18 C -0.14 -0.91 6.07 -27.81 -0.17 -1.08 16 19 C 0.53 5.34 7.74 -11.32 -0.09 5.25 16 20 O -0.52 -6.80 17.87 5.60 0.10 -6.70 16 21 N -0.68 -7.53 5.09 -11.75 -0.06 -7.59 16 22 C 0.49 6.77 7.46 -11.33 -0.08 6.68 16 23 O -0.46 -8.68 16.50 5.60 0.09 -8.58 16 24 C -0.09 -2.24 7.31 -38.47 -0.28 -2.52 16 25 F -0.17 -4.11 16.08 2.25 0.04 -4.07 16 26 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 27 H 0.12 3.18 6.18 -52.48 -0.32 2.86 16 28 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 29 H 0.09 1.68 6.17 -52.49 -0.32 1.36 16 30 H 0.40 6.30 8.08 -40.82 -0.33 5.97 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.41 4.32 8.79 -40.82 -0.36 3.96 16 LS Contribution 304.43 15.07 4.59 4.59 Total: -1.00 -31.97 304.43 -6.80 -38.78 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -3.33 Total: 10.35 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -3.54 Total: -8.52 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.28 Total: -39.36 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.19 Total: -15.29 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.04 Total: -4.07 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.97 -6.80 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167569030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.538 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds