Wall clock time and date at job start Tue Mar 31 2020 06:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30858 * 1 3 3 Si 1.86803 * 119.99841 * 2 1 4 4 H 1.48497 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47221 * 299.99872 * 3 2 1 6 6 H 1.48505 * 109.47256 * 59.99749 * 3 2 1 7 7 C 1.39915 * 120.00223 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00081 * 197.80013 * 7 2 1 9 9 C 1.41328 * 119.99923 * 17.80293 * 7 2 1 10 10 C 1.40821 * 120.22642 * 24.57053 * 9 7 2 11 11 C 1.37538 * 119.90832 * 180.02562 * 10 9 7 12 12 C 1.38666 * 120.38483 * 359.97438 * 11 10 9 13 13 C 1.39049 * 120.46628 * 0.27438 * 12 11 10 14 14 N 1.39888 * 119.96113 * 179.70741 * 13 12 11 15 15 C 1.46498 * 119.99999 * 359.97438 * 14 13 12 16 16 H 1.09006 * 109.52347 * 325.00066 * 15 14 13 17 17 C 1.53246 * 109.52211 * 204.87869 * 15 14 13 18 18 C 1.53242 * 108.56661 * 184.47752 * 17 15 14 19 19 C 1.50592 * 109.16251 * 55.60965 * 18 17 15 20 20 O 1.21223 * 119.35963 * 150.92758 * 19 18 17 21 21 N 1.34145 * 121.27852 * 330.90798 * 19 18 17 22 22 C 1.34201 * 122.60780 * 0.47505 * 21 19 18 23 23 O 1.21222 * 119.41184 * 179.50700 * 22 21 19 24 24 C 1.38630 * 120.08028 * 359.44942 * 13 12 11 25 25 F 1.35104 * 120.19572 * 180.25324 * 24 13 12 26 26 H 0.97005 * 119.99892 * 0.02562 * 1 2 3 27 27 H 1.07997 * 120.04617 * 359.97438 * 10 9 7 28 28 H 1.08001 * 119.80741 * 179.97438 * 11 10 9 29 29 H 1.07997 * 119.76481 * 180.02562 * 12 11 10 30 30 H 0.97001 * 119.99988 * 180.02562 * 14 13 12 31 31 H 1.09002 * 109.61840 * 304.19981 * 17 15 14 32 32 H 1.08994 * 109.62323 * 64.56684 * 17 15 14 33 33 H 1.08995 * 109.52785 * 175.51883 * 18 17 15 34 34 H 1.09005 * 109.52390 * 295.70870 * 18 17 15 35 35 H 0.96997 * 118.70332 * 180.54169 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.7025 1.3465 0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8837 2.3966 1.2125 7 6 2.0082 -1.2117 0.0005 8 1 3.0494 -1.2339 0.2865 9 6 1.3524 -2.4065 -0.3731 10 6 0.2219 -2.3623 -1.2117 11 6 -0.4116 -3.5290 -1.5709 12 6 0.0564 -4.7511 -1.1123 13 6 1.1682 -4.8128 -0.2794 14 7 1.6276 -6.0509 0.1819 15 6 0.9373 -7.2815 -0.2120 16 1 -0.1330 -7.0899 -0.2896 17 6 1.1881 -8.3682 0.8389 18 6 0.5521 -9.6744 0.3515 19 6 1.0994 -10.0128 -1.0101 20 8 1.1731 -11.1742 -1.3492 21 7 1.5067 -9.0537 -1.8550 22 6 1.4626 -7.7491 -1.5436 23 8 1.8542 -6.9314 -2.3483 24 6 1.8250 -3.6492 0.0900 25 9 2.9085 -3.7068 0.8950 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1475 -1.4134 -1.5717 28 1 -1.2787 -3.4932 -2.2138 29 1 -0.4485 -5.6611 -1.4009 30 1 2.4029 -6.0945 0.7633 31 1 2.2608 -8.5101 0.9700 32 1 0.7397 -8.0711 1.7869 33 1 0.7890 -10.4776 1.0492 34 1 -0.5293 -9.5521 0.2892 35 1 1.8456 -9.3134 -2.7260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167569031.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:28 Heat of formation + Delta-G solvation = -118.504518 kcal Electronic energy + Delta-G solvation = -22933.209975 eV Core-core repulsion = 19230.195963 eV Total energy + Delta-G solvation = -3703.014013 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.04800 -42.49647 -40.12650 -39.21519 -37.30152 -36.22528 -35.18900 -33.57462 -31.43919 -30.13763 -27.63435 -27.21772 -24.88262 -24.11565 -22.65775 -22.42894 -20.30612 -19.40474 -18.70670 -18.20138 -17.91458 -17.65194 -17.29881 -16.87397 -16.36896 -16.02809 -15.77352 -15.55211 -15.52574 -15.37731 -14.93041 -14.57193 -13.90261 -13.69613 -13.62152 -13.35010 -13.14928 -12.93012 -12.74214 -12.67435 -12.23835 -12.01833 -11.77723 -11.65866 -11.40775 -11.32702 -11.29935 -11.09914 -10.60642 -9.29803 -8.68885 -8.10064 -6.38918 0.48035 0.89547 1.12049 1.38275 1.50482 1.53478 1.71850 1.80188 2.20764 2.50476 2.71024 2.98439 3.54108 3.62880 3.69298 3.92010 4.01070 4.14406 4.42165 4.46975 4.75587 4.83078 4.88421 4.97645 5.03308 5.08804 5.11301 5.28018 5.43047 5.69106 5.79923 5.88836 6.10271 6.18284 6.38105 6.42072 6.70141 6.74632 6.84266 6.85829 7.05103 8.29007 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.037896 B = 0.003708 C = 0.003609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.687233 B = 7549.943564 C = 7756.180296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.041 3.959 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.066 0.934 9 C 0.087 3.913 10 C -0.207 4.207 11 C -0.076 4.076 12 C -0.267 4.267 13 C 0.218 3.782 14 N -0.729 5.729 15 C 0.141 3.859 16 H 0.135 0.865 17 C -0.119 4.119 18 C -0.126 4.126 19 C 0.527 3.473 20 O -0.544 6.544 21 N -0.672 5.672 22 C 0.499 3.501 23 O -0.520 6.520 24 C -0.126 4.126 25 F -0.172 7.172 26 H 0.292 0.708 27 H 0.108 0.892 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.403 0.597 31 H 0.085 0.915 32 H 0.129 0.871 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.367 -14.355 2.850 14.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.175 4.175 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.183 1.183 6 H -0.185 1.185 7 C -0.524 4.524 8 H 0.085 0.915 9 C 0.083 3.917 10 C -0.228 4.228 11 C -0.095 4.095 12 C -0.290 4.290 13 C 0.118 3.882 14 N -0.362 5.362 15 C 0.031 3.969 16 H 0.152 0.848 17 C -0.157 4.157 18 C -0.165 4.165 19 C 0.319 3.681 20 O -0.420 6.420 21 N -0.337 5.337 22 C 0.286 3.714 23 O -0.392 6.392 24 C -0.150 4.150 25 F -0.151 7.151 26 H 0.103 0.897 27 H 0.126 0.874 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.239 0.761 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.161 0.839 34 H 0.161 0.839 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.499 -14.404 2.444 14.822 hybrid contribution 1.210 0.839 -0.506 1.557 sum -1.289 -13.564 1.938 13.763 Atomic orbital electron populations 1.69876 1.08747 1.30798 1.34196 1.26689 0.95565 1.04227 0.91041 0.85164 0.79136 0.76089 0.79358 1.18881 1.18307 1.18524 1.19674 0.98094 0.92668 1.41926 0.91546 1.17777 0.92663 0.91208 0.90052 1.20975 1.00293 0.97725 1.03808 1.20800 0.98441 0.92169 0.98097 1.19964 1.01708 0.97490 1.09806 1.17339 0.93236 0.83640 0.94003 1.44044 1.35436 1.01079 1.55608 1.21148 0.99731 0.86246 0.89748 0.84795 1.22027 1.03803 0.90762 0.99131 1.22003 1.04352 0.99671 0.90507 1.21735 0.74410 0.83840 0.88118 1.90778 1.52961 1.20323 1.77896 1.45092 1.59933 1.07912 1.20787 1.22600 0.76443 0.81083 0.91307 1.90839 1.43939 1.53256 1.51174 1.17540 0.94556 0.94292 1.08640 1.91171 1.53992 1.97186 1.72796 0.89739 0.87435 0.86191 0.86040 0.76086 0.89598 0.85324 0.83852 0.83923 0.75421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.94 10.96 21.82 0.24 -41.70 16 2 C 0.04 2.11 5.14 85.24 0.44 2.55 16 3 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -27.95 8.78 23.44 0.21 -27.75 16 8 H 0.07 3.79 7.73 -2.91 -0.02 3.77 16 9 C 0.09 4.85 5.58 -21.26 -0.12 4.73 16 10 C -0.21 -10.93 8.69 22.74 0.20 -10.73 16 11 C -0.08 -3.44 10.01 22.21 0.22 -3.22 16 12 C -0.27 -11.09 8.64 22.57 0.19 -10.89 16 13 C 0.22 9.41 6.20 38.14 0.24 9.65 16 14 N -0.73 -23.11 5.04 -322.21 -1.62 -24.73 16 15 C 0.14 3.05 2.40 44.29 0.11 3.15 16 16 H 0.13 2.60 6.48 -2.38 -0.02 2.59 16 17 C -0.12 -1.32 5.56 30.76 0.17 -1.15 16 18 C -0.13 -1.03 6.07 29.89 0.18 -0.85 16 19 C 0.53 9.07 7.74 87.72 0.68 9.75 16 20 O -0.54 -13.04 17.87 -2.85 -0.05 -13.09 16 21 N -0.67 -13.60 5.10 -428.55 -2.18 -15.78 16 22 C 0.50 12.87 7.47 87.71 0.65 13.52 16 23 O -0.52 -19.18 16.50 -2.85 -0.05 -19.23 16 24 C -0.13 -6.53 7.32 22.99 0.17 -6.36 16 25 F -0.17 -8.76 16.08 44.97 0.72 -8.03 16 26 H 0.29 13.41 8.30 -92.70 -0.77 12.64 16 27 H 0.11 5.86 6.16 -2.91 -0.02 5.85 16 28 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.12 4.20 6.17 -2.91 -0.02 4.18 16 30 H 0.40 12.15 8.08 -92.71 -0.75 11.40 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.14 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.14 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.41 8.23 8.79 -92.71 -0.81 7.42 16 Total: -1.00 -73.74 304.38 2.04 -71.70 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.39 Total: 27.59 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.34 Total: -17.58 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -3.57 Total: -82.22 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.10 Total: -32.31 kcal Atomic # 9 Polarization: -8.76 SS G_CDS: 0.72 Total: -8.03 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -73.74 2.04 -71.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167569031.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.803 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds