Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00510 * 2 1 4 4 H 1.48503 * 109.47185 * 270.00248 * 3 2 1 5 5 H 1.48495 * 109.46898 * 30.00025 * 3 2 1 6 6 H 1.48500 * 109.47081 * 150.00159 * 3 2 1 7 7 C 1.39929 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 197.88641 * 7 2 1 9 9 C 1.41406 * 119.99982 * 17.88012 * 7 2 1 10 10 C 1.40755 * 120.19652 * 204.44681 * 9 7 2 11 11 C 1.37871 * 119.86789 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.85808 * 179.97438 * 11 10 9 13 13 C 1.38744 * 120.27701 * 359.72318 * 11 10 9 14 14 C 1.39248 * 120.39830 * 0.55731 * 13 11 10 15 15 N 1.39681 * 119.94209 * 179.72095 * 14 13 11 16 16 C 1.46505 * 119.99700 * 359.72526 * 15 14 13 17 17 H 1.09009 * 109.57130 * 324.83891 * 16 15 14 18 18 C 1.53240 * 109.51900 * 204.68568 * 16 15 14 19 19 C 1.53253 * 108.56329 * 184.47884 * 18 16 15 20 20 C 1.50584 * 109.16094 * 55.61113 * 19 18 16 21 21 O 1.21231 * 119.35995 * 150.92609 * 20 19 18 22 22 N 1.34148 * 121.28323 * 330.65408 * 20 19 18 23 23 C 1.34148 * 122.57948 * 1.07217 * 22 20 19 24 24 O 1.21222 * 119.35574 * 179.20965 * 23 22 20 25 25 C 1.38335 * 120.12239 * 359.44459 * 14 13 11 26 26 H 0.97007 * 119.99496 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.05996 * 0.04586 * 10 9 7 28 28 H 1.08000 * 119.80117 * 180.27270 * 13 11 10 29 29 H 0.96992 * 120.00292 * 179.72029 * 15 14 13 30 30 H 1.08993 * 109.62317 * 304.19706 * 18 16 15 31 31 H 1.09000 * 109.62574 * 64.57267 * 18 16 15 32 32 H 1.09005 * 109.52070 * 175.51712 * 19 18 16 33 33 H 1.09002 * 109.52226 * 295.70982 * 19 18 16 34 34 H 0.96996 * 118.71184 * 180.82646 * 22 20 19 35 35 H 1.08003 * 120.14186 * 180.25611 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5400 1.4399 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2347 0.2867 9 6 1.3520 -2.4067 -0.3771 10 6 1.8256 -3.6496 0.0833 11 6 1.1812 -4.8104 -0.2884 12 9 1.6363 -6.0034 0.1531 13 6 0.0643 -4.7581 -1.1099 14 6 -0.4105 -3.5351 -1.5766 15 7 -1.5323 -3.4940 -2.4078 16 6 -2.2047 -4.7375 -2.7927 17 1 -1.4658 -5.5297 -2.9138 18 6 -2.9518 -4.5277 -4.1141 19 6 -3.7370 -5.8032 -4.4384 20 6 -4.6398 -6.1359 -3.2800 21 8 -5.6781 -6.7268 -3.4863 22 7 -4.3150 -5.7958 -2.0237 23 6 -3.1908 -5.1280 -1.7238 24 8 -2.9621 -4.8378 -0.5693 25 6 0.2233 -2.3602 -1.2139 26 1 -0.4850 0.8401 0.0004 27 1 2.6919 -3.6938 0.7267 28 1 -0.4372 -5.6719 -1.3927 29 1 -1.8662 -2.6423 -2.7301 30 1 -3.6408 -3.6889 -4.0159 31 1 -2.2365 -4.3225 -4.9105 32 1 -4.3374 -5.6435 -5.3341 33 1 -3.0420 -6.6260 -4.6065 34 1 -4.9182 -6.0393 -1.3043 35 1 -0.1472 -1.4112 -1.5723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167577368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -97.288456 kcal Electronic energy + Delta-G solvation = -22892.563724 eV Core-core repulsion = 19190.469709 eV Total energy + Delta-G solvation = -3702.094015 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.70965 -41.47742 -38.98746 -37.70030 -35.97092 -34.85543 -33.56742 -32.43805 -29.42318 -28.84806 -26.28320 -25.49547 -23.99672 -22.98734 -21.23430 -20.55497 -19.34530 -17.89223 -17.58008 -17.17535 -16.39209 -16.17678 -15.37695 -15.13211 -14.92661 -14.77458 -14.53831 -14.44092 -14.34605 -14.10518 -13.83576 -13.06278 -12.90478 -12.65517 -12.12229 -11.91297 -11.74627 -11.42490 -11.26089 -11.16111 -10.67324 -10.54286 -10.45575 -10.23892 -10.21112 -10.11559 -9.71587 -9.41353 -8.83785 -7.38777 -6.88113 -6.46693 -4.48765 1.49486 2.64206 2.72431 2.76389 2.95547 3.04160 3.07796 3.18500 3.72961 3.88116 3.92401 4.35641 4.44625 4.56022 4.68806 4.85878 5.12203 5.33605 5.49725 5.57418 5.66048 5.72363 5.98236 6.27686 6.57421 6.66967 6.81530 6.96259 7.10905 7.19768 7.34292 7.40575 7.65236 7.83835 7.87836 7.98814 8.25056 8.36734 8.61645 8.82538 8.87710 10.10750 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.004406 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.450554 B = 6353.752506 C = 7213.611723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.909 3.091 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.457 4.457 8 H 0.081 0.919 9 C 0.157 3.843 10 C -0.285 4.285 11 C 0.142 3.858 12 F -0.168 7.168 13 C -0.319 4.319 14 C 0.240 3.760 15 N -0.732 5.732 16 C 0.146 3.854 17 H 0.119 0.881 18 C -0.131 4.131 19 C -0.138 4.138 20 C 0.525 3.475 21 O -0.516 6.516 22 N -0.677 5.677 23 C 0.487 3.513 24 O -0.460 6.460 25 C -0.232 4.232 26 H 0.281 0.719 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.400 0.600 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.407 0.593 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -4.830 -9.946 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.141 4.141 3 Si 0.734 3.266 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.185 1.185 7 C -0.486 4.486 8 H 0.099 0.901 9 C 0.153 3.847 10 C -0.306 4.306 11 C 0.122 3.878 12 F -0.147 7.147 13 C -0.342 4.342 14 C 0.142 3.858 15 N -0.365 5.365 16 C 0.034 3.966 17 H 0.137 0.863 18 C -0.169 4.169 19 C -0.178 4.178 20 C 0.314 3.686 21 O -0.390 6.390 22 N -0.344 5.344 23 C 0.272 3.728 24 O -0.327 6.327 25 C -0.255 4.255 26 H 0.092 0.908 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.235 0.765 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.246 0.754 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.396 -4.953 -9.538 12.507 hybrid contribution -0.181 0.677 0.550 0.891 sum -6.577 -4.276 -8.989 11.930 Atomic orbital electron populations 1.69870 1.07590 1.29229 1.34124 1.25926 0.94719 1.01355 0.92093 0.86293 0.80570 0.80426 0.79352 1.19201 1.20323 1.18517 1.19581 0.98286 0.90975 1.39752 0.90078 1.17051 0.89700 0.91131 0.86787 1.20847 1.06616 0.91627 1.11499 1.17202 0.94651 0.79383 0.96559 1.91326 1.88916 1.46008 1.88486 1.19581 1.04099 0.95750 1.14738 1.17157 0.85495 0.93571 0.89556 1.44050 1.30989 1.05030 1.56455 1.20734 0.93292 0.92282 0.90293 0.86337 1.22020 1.00016 0.97657 0.97233 1.21882 0.99160 1.00055 0.96720 1.20982 0.86530 0.76758 0.84299 1.90773 1.24962 1.38521 1.84761 1.45129 1.24303 1.54043 1.10938 1.22403 0.81569 0.76458 0.92416 1.90867 1.73106 1.47937 1.20805 1.20732 1.02701 0.95076 1.07013 0.90843 0.87998 0.88906 0.76471 0.90011 0.87873 0.86529 0.86770 0.75416 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.46 10.96 55.55 0.61 -18.85 16 2 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 17.92 29.60 -169.99 -5.03 12.89 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 8 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 9 C 0.16 4.09 5.57 -106.86 -0.60 3.49 16 10 C -0.28 -7.17 9.76 -38.77 -0.38 -7.55 16 11 C 0.14 3.40 7.28 -39.53 -0.29 3.12 16 12 F -0.17 -3.85 17.26 2.25 0.04 -3.82 16 13 C -0.32 -7.12 8.58 -39.02 -0.33 -7.46 16 14 C 0.24 5.20 6.19 -83.87 -0.52 4.68 16 15 N -0.73 -12.01 5.04 -53.28 -0.27 -12.28 16 16 C 0.15 1.84 2.40 -69.01 -0.17 1.67 16 17 H 0.12 1.46 6.50 -51.92 -0.34 1.12 16 18 C -0.13 -1.02 5.56 -26.48 -0.15 -1.17 16 19 C -0.14 -0.94 6.07 -27.81 -0.17 -1.11 16 20 C 0.53 5.59 7.74 -11.32 -0.09 5.50 16 21 O -0.52 -7.05 17.88 5.60 0.10 -6.95 16 22 N -0.68 -7.98 5.10 -11.75 -0.06 -8.04 16 23 C 0.49 7.09 7.44 -11.32 -0.08 7.01 16 24 O -0.46 -9.10 16.47 5.61 0.09 -9.01 16 25 C -0.23 -5.66 8.53 -38.66 -0.33 -5.99 16 26 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 27 H 0.10 2.46 8.06 -52.49 -0.42 2.04 16 28 H 0.09 1.89 6.16 -52.49 -0.32 1.57 16 29 H 0.40 5.98 8.61 -40.82 -0.35 5.63 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.63 8.79 -40.82 -0.36 4.27 16 35 H 0.12 3.04 6.15 -52.48 -0.32 2.72 16 LS Contribution 305.97 15.07 4.61 4.61 Total: -1.00 -31.55 305.97 -6.79 -38.34 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -3.36 Total: 11.20 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: -3.53 Total: -8.11 kcal Atomic # 7 Polarization: -39.44 SS G_CDS: 0.28 Total: -39.16 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.19 Total: -15.96 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.04 Total: -3.82 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -31.55 -6.79 -38.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167577368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.944 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds