Wall clock time and date at job start Tue Mar 31 2020 06:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30833 * 1 3 3 Si 1.86799 * 120.00510 * 2 1 4 4 H 1.48503 * 109.47185 * 270.00248 * 3 2 1 5 5 H 1.48495 * 109.46898 * 30.00025 * 3 2 1 6 6 H 1.48500 * 109.47081 * 150.00159 * 3 2 1 7 7 C 1.39929 * 119.99498 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99844 * 197.88641 * 7 2 1 9 9 C 1.41406 * 119.99982 * 17.88012 * 7 2 1 10 10 C 1.40755 * 120.19652 * 204.44681 * 9 7 2 11 11 C 1.37871 * 119.86789 * 180.02562 * 10 9 7 12 12 F 1.35099 * 119.85808 * 179.97438 * 11 10 9 13 13 C 1.38744 * 120.27701 * 359.72318 * 11 10 9 14 14 C 1.39248 * 120.39830 * 0.55731 * 13 11 10 15 15 N 1.39681 * 119.94209 * 179.72095 * 14 13 11 16 16 C 1.46505 * 119.99700 * 359.72526 * 15 14 13 17 17 H 1.09009 * 109.57130 * 324.83891 * 16 15 14 18 18 C 1.53240 * 109.51900 * 204.68568 * 16 15 14 19 19 C 1.53253 * 108.56329 * 184.47884 * 18 16 15 20 20 C 1.50584 * 109.16094 * 55.61113 * 19 18 16 21 21 O 1.21231 * 119.35995 * 150.92609 * 20 19 18 22 22 N 1.34148 * 121.28323 * 330.65408 * 20 19 18 23 23 C 1.34148 * 122.57948 * 1.07217 * 22 20 19 24 24 O 1.21222 * 119.35574 * 179.20965 * 23 22 20 25 25 C 1.38335 * 120.12239 * 359.44459 * 14 13 11 26 26 H 0.97007 * 119.99496 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.05996 * 0.04586 * 10 9 7 28 28 H 1.08000 * 119.80117 * 180.27270 * 13 11 10 29 29 H 0.96992 * 120.00292 * 179.72029 * 15 14 13 30 30 H 1.08993 * 109.62317 * 304.19706 * 18 16 15 31 31 H 1.09000 * 109.62574 * 64.57267 * 18 16 15 32 32 H 1.09005 * 109.52070 * 175.51712 * 19 18 16 33 33 H 1.09002 * 109.52226 * 295.70982 * 19 18 16 34 34 H 0.96996 * 118.71184 * 180.82646 * 22 20 19 35 35 H 1.08003 * 120.14186 * 180.25611 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2425 1.6176 0.0000 4 1 2.4900 2.0464 -1.4001 5 1 1.4400 2.6526 0.7000 6 1 3.5400 1.4399 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0488 -1.2347 0.2867 9 6 1.3520 -2.4067 -0.3771 10 6 1.8256 -3.6496 0.0833 11 6 1.1812 -4.8104 -0.2884 12 9 1.6363 -6.0034 0.1531 13 6 0.0643 -4.7581 -1.1099 14 6 -0.4105 -3.5351 -1.5766 15 7 -1.5323 -3.4940 -2.4078 16 6 -2.2047 -4.7375 -2.7927 17 1 -1.4658 -5.5297 -2.9138 18 6 -2.9518 -4.5277 -4.1141 19 6 -3.7370 -5.8032 -4.4384 20 6 -4.6398 -6.1359 -3.2800 21 8 -5.6781 -6.7268 -3.4863 22 7 -4.3150 -5.7958 -2.0237 23 6 -3.1908 -5.1280 -1.7238 24 8 -2.9621 -4.8378 -0.5693 25 6 0.2233 -2.3602 -1.2139 26 1 -0.4850 0.8401 0.0004 27 1 2.6919 -3.6938 0.7267 28 1 -0.4372 -5.6719 -1.3927 29 1 -1.8662 -2.6423 -2.7301 30 1 -3.6408 -3.6889 -4.0159 31 1 -2.2365 -4.3225 -4.9105 32 1 -4.3374 -5.6435 -5.3341 33 1 -3.0420 -6.6260 -4.6065 34 1 -4.9182 -6.0393 -1.3043 35 1 -0.1472 -1.4112 -1.5723 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167577368.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:30 Heat of formation + Delta-G solvation = -119.820273 kcal Electronic energy + Delta-G solvation = -22893.540777 eV Core-core repulsion = 19190.469709 eV Total energy + Delta-G solvation = -3703.071068 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.57774 -42.50314 -40.16581 -39.33246 -37.21062 -36.14574 -35.15954 -33.63439 -31.22549 -30.24990 -27.70374 -27.26567 -24.87764 -24.06098 -22.99086 -22.24513 -20.34437 -19.54158 -18.70939 -18.21936 -17.85250 -17.50937 -16.90024 -16.77443 -16.42081 -16.24252 -16.00164 -15.82442 -15.65056 -15.42857 -15.25347 -14.56711 -13.98129 -13.80195 -13.51582 -13.46146 -12.95592 -12.90419 -12.77661 -12.51246 -12.21501 -12.04877 -11.93139 -11.62267 -11.50923 -11.33367 -11.30136 -11.09119 -10.51474 -9.26621 -8.68180 -8.14078 -6.41721 0.48370 0.92124 1.05610 1.42751 1.54197 1.55636 1.73516 1.79656 2.23542 2.54016 2.71738 2.99625 3.55564 3.63375 3.70784 3.82404 3.99069 4.08335 4.41223 4.53244 4.70775 4.76844 4.88473 4.92138 5.02638 5.11426 5.12612 5.25826 5.45491 5.63628 5.78615 5.84402 6.06423 6.08963 6.38867 6.42297 6.77866 6.79727 6.88721 6.94090 7.07586 8.32327 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.004406 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.450554 B = 6353.752506 C = 7213.611723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.042 3.958 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.493 4.493 8 H 0.077 0.923 9 C 0.132 3.868 10 C -0.314 4.314 11 C 0.133 3.867 12 F -0.164 7.164 13 C -0.319 4.319 14 C 0.255 3.745 15 N -0.723 5.723 16 C 0.139 3.861 17 H 0.130 0.870 18 C -0.117 4.117 19 C -0.127 4.127 20 C 0.527 3.473 21 O -0.545 6.545 22 N -0.674 5.674 23 C 0.495 3.505 24 O -0.522 6.522 25 C -0.254 4.254 26 H 0.290 0.710 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.408 0.592 30 H 0.088 0.912 31 H 0.132 0.868 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.406 0.594 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 -4.675 -12.431 14.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.175 4.175 3 Si 0.804 3.196 4 H -0.181 1.181 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.522 4.522 8 H 0.095 0.905 9 C 0.128 3.872 10 C -0.335 4.335 11 C 0.113 3.887 12 F -0.143 7.143 13 C -0.342 4.342 14 C 0.154 3.846 15 N -0.355 5.355 16 C 0.029 3.971 17 H 0.147 0.853 18 C -0.155 4.155 19 C -0.166 4.166 20 C 0.318 3.682 21 O -0.421 6.421 22 N -0.338 5.338 23 C 0.282 3.718 24 O -0.394 6.394 25 C -0.278 4.278 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.133 0.867 29 H 0.245 0.755 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.244 0.756 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.210 -4.834 -12.082 14.877 hybrid contribution -0.083 0.490 1.297 1.389 sum -7.294 -4.344 -10.785 13.725 Atomic orbital electron populations 1.69910 1.08945 1.30662 1.34213 1.26729 0.95457 1.04322 0.90956 0.85179 0.78927 0.75704 0.79756 1.18107 1.19410 1.18553 1.19825 0.98471 0.92230 1.41629 0.90510 1.17399 0.90705 0.91595 0.87482 1.20919 1.07456 0.92251 1.12890 1.17388 0.95141 0.79252 0.96874 1.91324 1.88954 1.45529 1.88483 1.19815 1.03416 0.96923 1.14021 1.17149 0.86199 0.92379 0.88853 1.44071 1.29439 1.07165 1.54821 1.21149 0.93282 0.90773 0.91896 0.85319 1.22026 1.00272 0.98456 0.94743 1.22018 0.98897 1.00246 0.95457 1.21787 0.86497 0.75519 0.84375 1.90776 1.26496 1.39874 1.84910 1.45116 1.23485 1.53336 1.11891 1.22718 0.81932 0.75298 0.91812 1.90857 1.74635 1.50706 1.23217 1.20715 1.03277 0.95802 1.08014 0.89968 0.88421 0.86723 0.75549 0.89382 0.84955 0.83726 0.84091 0.75576 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.90 10.96 21.82 0.24 -40.66 16 2 C 0.04 2.04 5.14 85.25 0.44 2.48 16 3 Si 0.98 36.73 29.60 68.60 2.03 38.76 16 4 H -0.26 -9.11 7.11 99.48 0.71 -8.40 16 5 H -0.27 -9.61 7.11 99.48 0.71 -8.90 16 6 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 7 C -0.49 -26.23 9.05 23.46 0.21 -26.01 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.95 16 9 C 0.13 7.12 5.57 -21.31 -0.12 7.00 16 10 C -0.31 -16.45 9.76 22.80 0.22 -16.22 16 11 C 0.13 6.49 7.28 22.30 0.16 6.65 16 12 F -0.16 -7.54 17.26 44.97 0.78 -6.76 16 13 C -0.32 -14.12 8.58 22.63 0.19 -13.92 16 14 C 0.26 10.97 6.19 38.16 0.24 11.21 16 15 N -0.72 -22.51 5.04 -322.47 -1.63 -24.14 16 16 C 0.14 3.12 2.40 44.29 0.11 3.23 16 17 H 0.13 2.71 6.50 -2.38 -0.02 2.69 16 18 C -0.12 -1.29 5.56 30.76 0.17 -1.12 16 19 C -0.13 -1.11 6.07 29.90 0.18 -0.93 16 20 C 0.53 9.70 7.74 87.72 0.68 10.38 16 21 O -0.54 -13.67 17.88 -2.88 -0.05 -13.72 16 22 N -0.67 -14.82 5.10 -428.62 -2.18 -17.01 16 23 C 0.50 13.75 7.44 87.72 0.65 14.40 16 24 O -0.52 -20.73 16.47 -2.85 -0.05 -20.78 16 25 C -0.25 -12.69 8.53 22.86 0.20 -12.49 16 26 H 0.29 13.07 8.30 -92.70 -0.77 12.30 16 27 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 28 H 0.11 4.49 6.16 -2.91 -0.02 4.47 16 29 H 0.41 11.47 8.61 -92.71 -0.80 10.67 16 30 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.14 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.41 9.04 8.79 -92.71 -0.81 8.22 16 35 H 0.12 5.85 6.15 -2.91 -0.02 5.83 16 Total: -1.00 -71.84 305.97 2.03 -69.81 By element: Atomic # 1 Polarization: 30.29 SS G_CDS: -0.44 Total: 29.85 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 3.33 Total: -15.35 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.57 Total: -81.80 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -0.10 Total: -34.50 kcal Atomic # 9 Polarization: -7.54 SS G_CDS: 0.78 Total: -6.76 kcal Atomic # 14 Polarization: 36.73 SS G_CDS: 2.03 Total: 38.76 kcal Total: -71.84 2.03 -69.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167577368.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.013 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds