Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86798 * 120.00414 * 2 1 4 4 H 1.48502 * 109.47219 * 240.00715 * 3 2 1 5 5 H 1.48503 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46970 * 120.00203 * 3 2 1 7 7 C 1.39915 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 199.63986 * 7 2 1 9 9 C 1.40995 * 120.00237 * 19.64629 * 7 2 1 10 10 C 1.40996 * 120.31958 * 36.78716 * 9 7 2 11 11 F 1.35095 * 120.12000 * 0.04579 * 10 9 7 12 12 C 1.37741 * 119.76262 * 180.02562 * 10 9 7 13 13 C 1.38788 * 120.42970 * 0.02562 * 12 10 9 14 14 C 1.38220 * 120.66051 * 359.70185 * 13 12 10 15 15 C 1.38629 * 120.22215 * 0.55812 * 14 13 12 16 16 N 1.38802 * 120.21943 * 179.74877 * 15 14 13 17 17 C 1.46501 * 120.00185 * 359.71668 * 16 15 14 18 18 H 1.08997 * 109.51865 * 325.00337 * 17 16 15 19 19 C 1.53234 * 109.52226 * 204.87565 * 17 16 15 20 20 C 1.53249 * 108.56725 * 184.41793 * 19 17 16 21 21 C 1.50586 * 109.16088 * 55.61168 * 20 19 17 22 22 O 1.21225 * 119.36026 * 150.92747 * 21 20 19 23 23 N 1.34138 * 121.27855 * 330.91148 * 21 20 19 24 24 C 1.34137 * 122.59435 * 0.54112 * 23 21 20 25 25 O 1.21227 * 119.36543 * 179.45549 * 24 23 21 26 26 H 0.97005 * 119.99894 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.78431 * 179.97438 * 12 10 9 28 28 H 1.07999 * 119.66488 * 179.97438 * 13 12 10 29 29 H 1.08002 * 119.89022 * 180.27902 * 14 13 12 30 30 H 0.97005 * 120.00007 * 179.71907 * 16 15 14 31 31 H 1.08995 * 109.62509 * 304.13801 * 19 17 16 32 32 H 1.09003 * 109.62258 * 64.51088 * 19 17 16 33 33 H 1.09000 * 109.52187 * 175.52244 * 20 19 17 34 34 H 1.09005 * 109.51725 * 295.70755 * 20 19 17 35 35 H 0.97010 * 118.70259 * 180.54428 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.0968 1.6964 -1.2126 5 1 1.2782 2.7464 0.0006 6 1 3.0969 1.6962 1.2124 7 6 2.0085 -1.2118 -0.0005 8 1 3.0414 -1.2392 0.3138 9 6 1.3651 -2.3971 -0.4116 10 6 0.4329 -2.3710 -1.4691 11 9 0.1514 -1.2079 -2.0961 12 6 -0.1894 -3.5356 -1.8610 13 6 0.0949 -4.7340 -1.2213 14 6 1.0098 -4.7809 -0.1863 15 6 1.6480 -3.6241 0.2338 16 7 2.5629 -3.6704 1.2766 17 6 2.8523 -4.9434 1.9413 18 1 1.9458 -5.5472 1.9821 19 6 3.3539 -4.6756 3.3642 20 6 3.7543 -6.0114 3.9999 21 6 4.7686 -6.6931 3.1200 22 8 5.5871 -7.4341 3.6204 23 7 4.7837 -6.4965 1.7932 24 6 3.9156 -5.6832 1.1733 25 8 3.9885 -5.5408 -0.0284 26 1 -0.4850 0.8401 0.0004 27 1 -0.9038 -3.5160 -2.6707 28 1 -0.4006 -5.6398 -1.5383 29 1 1.2249 -5.7210 0.2997 30 1 3.0106 -2.8597 1.5652 31 1 4.2188 -4.0133 3.3289 32 1 2.5609 -4.2113 3.9506 33 1 4.1879 -5.8311 4.9836 34 1 2.8735 -6.6458 4.0996 35 1 5.4486 -6.9609 1.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167578829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -86.800682 kcal Electronic energy + Delta-G solvation = -23326.398096 eV Core-core repulsion = 19624.758864 eV Total energy + Delta-G solvation = -3701.639231 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.86371 -41.43885 -38.96852 -37.71699 -35.80990 -34.57331 -33.53500 -32.50166 -29.81788 -28.46436 -26.59005 -25.00032 -23.96330 -23.00782 -21.14092 -20.42588 -19.22645 -17.69417 -17.39507 -17.18575 -16.56096 -16.30261 -15.50697 -14.98110 -14.86169 -14.67745 -14.44736 -14.17392 -13.91508 -13.68627 -13.61824 -12.97983 -12.73638 -12.52809 -12.04527 -11.75690 -11.45906 -11.42496 -11.22961 -11.15055 -10.87888 -10.61738 -10.42692 -10.23767 -10.20466 -10.12417 -9.53556 -9.07989 -8.96954 -7.16176 -6.74653 -6.48966 -4.26347 1.52294 2.66038 2.77064 2.80070 2.95181 3.11951 3.12664 3.20714 3.84616 4.01316 4.04105 4.45618 4.53138 4.69366 4.79996 4.93455 5.17813 5.40418 5.47004 5.61768 5.76588 6.01450 6.06828 6.07357 6.38526 6.44777 6.81525 6.94527 7.18439 7.26936 7.30749 7.36830 7.60119 7.81296 7.88815 8.05185 8.23891 8.47054 8.56805 8.86978 8.95519 10.31010 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.005156 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.513059 B = 5428.876257 C = 6358.441212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.083 3.917 3 Si 0.903 3.097 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.480 4.480 8 H 0.075 0.925 9 C 0.049 3.951 10 C 0.063 3.937 11 F -0.142 7.142 12 C -0.176 4.176 13 C -0.164 4.164 14 C -0.174 4.174 15 C 0.145 3.855 16 N -0.718 5.718 17 C 0.147 3.853 18 H 0.116 0.884 19 C -0.131 4.131 20 C -0.138 4.138 21 C 0.526 3.474 22 O -0.517 6.517 23 N -0.677 5.677 24 C 0.488 3.512 25 O -0.467 6.467 26 H 0.280 0.720 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.405 0.595 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 -7.572 7.950 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.136 4.136 3 Si 0.728 3.272 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.510 4.510 8 H 0.093 0.907 9 C 0.044 3.956 10 C 0.041 3.959 11 F -0.121 7.121 12 C -0.196 4.196 13 C -0.184 4.184 14 C -0.196 4.196 15 C 0.047 3.953 16 N -0.352 5.352 17 C 0.034 3.966 18 H 0.133 0.867 19 C -0.170 4.170 20 C -0.178 4.178 21 C 0.315 3.685 22 O -0.391 6.391 23 N -0.344 5.344 24 C 0.273 3.727 25 O -0.334 6.334 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.100 0.900 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 3.929 -7.681 7.678 11.550 hybrid contribution 0.768 0.988 -0.378 1.307 sum 4.697 -6.693 7.301 10.962 Atomic orbital electron populations 1.69777 1.07519 1.29440 1.34346 1.25645 0.94530 1.00661 0.92776 0.86451 0.80134 0.80986 0.79588 1.19067 1.20533 1.19419 1.18849 0.98241 0.91283 1.42605 0.90674 1.17012 0.94962 0.91745 0.91902 1.17437 1.02898 0.80330 0.95200 1.91318 1.92506 1.47713 1.80556 1.20452 1.03486 0.92691 1.02978 1.19919 1.02605 0.95888 0.99980 1.19975 1.02761 0.95073 1.01833 1.17497 0.93888 0.93790 0.90157 1.43621 1.47762 1.05841 1.37977 1.20696 0.96039 0.89239 0.90585 0.86659 1.22018 1.03624 0.96860 0.94461 1.21887 0.99133 0.97189 0.99602 1.21000 0.84921 0.80362 0.82215 1.90768 1.38745 1.36076 1.73529 1.45147 1.34609 1.44777 1.09865 1.22592 0.82438 0.78264 0.89415 1.90828 1.69156 1.58932 1.14503 0.90899 0.88402 0.88516 0.89284 0.75766 0.90002 0.87769 0.86579 0.86819 0.75556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.74 11.12 55.55 0.62 -20.12 16 2 C 0.08 2.08 4.52 -17.32 -0.08 2.00 16 3 Si 0.90 19.06 29.60 -169.99 -5.03 14.02 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.48 -12.20 8.12 -37.91 -0.31 -12.51 16 8 H 0.08 1.81 7.15 -52.48 -0.38 1.43 16 9 C 0.05 1.26 5.41 -106.57 -0.58 0.68 16 10 C 0.06 1.66 6.67 -38.72 -0.26 1.40 16 11 F -0.14 -3.92 14.28 2.25 0.03 -3.88 16 12 C -0.18 -4.13 9.99 -39.56 -0.40 -4.52 16 13 C -0.16 -3.52 10.03 -39.38 -0.40 -3.92 16 14 C -0.17 -3.65 8.59 -39.44 -0.34 -3.98 16 15 C 0.15 3.22 6.23 -83.32 -0.52 2.70 16 16 N -0.72 -12.71 4.94 -52.82 -0.26 -12.98 16 17 C 0.15 1.91 2.39 -69.01 -0.17 1.74 16 18 H 0.12 1.41 6.49 -51.93 -0.34 1.07 16 19 C -0.13 -1.15 5.56 -26.48 -0.15 -1.30 16 20 C -0.14 -1.00 6.07 -27.81 -0.17 -1.17 16 21 C 0.53 5.62 7.74 -11.33 -0.09 5.53 16 22 O -0.52 -7.08 17.87 5.61 0.10 -6.98 16 23 N -0.68 -7.81 5.09 -11.75 -0.06 -7.87 16 24 C 0.49 6.94 7.45 -11.32 -0.08 6.86 16 25 O -0.47 -8.79 16.49 5.60 0.09 -8.70 16 26 H 0.28 6.89 8.30 -40.82 -0.34 6.55 16 27 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.09 1.63 6.17 -52.49 -0.32 1.30 16 30 H 0.41 7.13 7.04 -40.82 -0.29 6.84 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.41 4.46 8.79 -40.82 -0.36 4.10 16 LS Contribution 302.12 15.07 4.55 4.55 Total: -1.00 -31.95 302.12 -6.83 -38.78 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -3.35 Total: 9.66 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -3.52 Total: -6.49 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.30 Total: -40.97 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.19 Total: -15.68 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.03 Total: -3.88 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.95 -6.83 -38.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167578829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.018 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds