Wall clock time and date at job start Tue Mar 31 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86798 * 120.00414 * 2 1 4 4 H 1.48502 * 109.47219 * 240.00715 * 3 2 1 5 5 H 1.48503 * 109.46871 * 0.02562 * 3 2 1 6 6 H 1.48491 * 109.46970 * 120.00203 * 3 2 1 7 7 C 1.39915 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99849 * 199.63986 * 7 2 1 9 9 C 1.40995 * 120.00237 * 19.64629 * 7 2 1 10 10 C 1.40996 * 120.31958 * 36.78716 * 9 7 2 11 11 F 1.35095 * 120.12000 * 0.04579 * 10 9 7 12 12 C 1.37741 * 119.76262 * 180.02562 * 10 9 7 13 13 C 1.38788 * 120.42970 * 0.02562 * 12 10 9 14 14 C 1.38220 * 120.66051 * 359.70185 * 13 12 10 15 15 C 1.38629 * 120.22215 * 0.55812 * 14 13 12 16 16 N 1.38802 * 120.21943 * 179.74877 * 15 14 13 17 17 C 1.46501 * 120.00185 * 359.71668 * 16 15 14 18 18 H 1.08997 * 109.51865 * 325.00337 * 17 16 15 19 19 C 1.53234 * 109.52226 * 204.87565 * 17 16 15 20 20 C 1.53249 * 108.56725 * 184.41793 * 19 17 16 21 21 C 1.50586 * 109.16088 * 55.61168 * 20 19 17 22 22 O 1.21225 * 119.36026 * 150.92747 * 21 20 19 23 23 N 1.34138 * 121.27855 * 330.91148 * 21 20 19 24 24 C 1.34137 * 122.59435 * 0.54112 * 23 21 20 25 25 O 1.21227 * 119.36543 * 179.45549 * 24 23 21 26 26 H 0.97005 * 119.99894 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.78431 * 179.97438 * 12 10 9 28 28 H 1.07999 * 119.66488 * 179.97438 * 13 12 10 29 29 H 1.08002 * 119.89022 * 180.27902 * 14 13 12 30 30 H 0.97005 * 120.00007 * 179.71907 * 16 15 14 31 31 H 1.08995 * 109.62509 * 304.13801 * 19 17 16 32 32 H 1.09003 * 109.62258 * 64.51088 * 19 17 16 33 33 H 1.09000 * 109.52187 * 175.52244 * 20 19 17 34 34 H 1.09005 * 109.51725 * 295.70755 * 20 19 17 35 35 H 0.97010 * 118.70259 * 180.54428 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.0968 1.6964 -1.2126 5 1 1.2782 2.7464 0.0006 6 1 3.0969 1.6962 1.2124 7 6 2.0085 -1.2118 -0.0005 8 1 3.0414 -1.2392 0.3138 9 6 1.3651 -2.3971 -0.4116 10 6 0.4329 -2.3710 -1.4691 11 9 0.1514 -1.2079 -2.0961 12 6 -0.1894 -3.5356 -1.8610 13 6 0.0949 -4.7340 -1.2213 14 6 1.0098 -4.7809 -0.1863 15 6 1.6480 -3.6241 0.2338 16 7 2.5629 -3.6704 1.2766 17 6 2.8523 -4.9434 1.9413 18 1 1.9458 -5.5472 1.9821 19 6 3.3539 -4.6756 3.3642 20 6 3.7543 -6.0114 3.9999 21 6 4.7686 -6.6931 3.1200 22 8 5.5871 -7.4341 3.6204 23 7 4.7837 -6.4965 1.7932 24 6 3.9156 -5.6832 1.1733 25 8 3.9885 -5.5408 -0.0284 26 1 -0.4850 0.8401 0.0004 27 1 -0.9038 -3.5160 -2.6707 28 1 -0.4006 -5.6398 -1.5383 29 1 1.2249 -5.7210 0.2997 30 1 3.0106 -2.8597 1.5652 31 1 4.2188 -4.0133 3.3289 32 1 2.5609 -4.2113 3.9506 33 1 4.1879 -5.8311 4.9836 34 1 2.8735 -6.6458 4.0996 35 1 5.4486 -6.9609 1.2609 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167578829.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:42 Heat of formation + Delta-G solvation = -109.653670 kcal Electronic energy + Delta-G solvation = -23327.389076 eV Core-core repulsion = 19624.758864 eV Total energy + Delta-G solvation = -3702.630211 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -48.86393 -42.46036 -40.14356 -39.27940 -36.96117 -35.78039 -35.36191 -33.62039 -31.52393 -29.92805 -27.96265 -26.77168 -24.84922 -24.07877 -22.83767 -22.05170 -20.25628 -19.24268 -18.70561 -18.34785 -18.00067 -17.48350 -16.97701 -16.66058 -16.06152 -15.91145 -15.77204 -15.59389 -15.50066 -15.33618 -15.13092 -14.44826 -13.86566 -13.56990 -13.54472 -13.18351 -13.11828 -12.91805 -12.85065 -12.55078 -12.32952 -12.04411 -11.84539 -11.56070 -11.33182 -11.28756 -11.26524 -10.82502 -10.59084 -9.02487 -8.57486 -8.14986 -6.14340 0.52311 0.98781 1.07220 1.39758 1.48538 1.51948 1.76375 1.84922 2.26782 2.70537 2.85602 3.04453 3.55825 3.67968 3.72905 3.98788 4.09373 4.29050 4.41491 4.50222 4.65733 4.77598 4.80802 4.91903 5.05539 5.15415 5.20045 5.35480 5.54676 5.60038 5.80854 5.87120 6.04009 6.24639 6.41813 6.48348 6.71047 6.85550 6.95063 7.10266 7.17022 8.48830 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019101 B = 0.005156 C = 0.004403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.513059 B = 5428.876257 C = 6358.441212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.042 3.958 3 Si 0.966 3.034 4 H -0.275 1.275 5 H -0.277 1.277 6 H -0.251 1.251 7 C -0.501 4.501 8 H 0.079 0.921 9 C 0.009 3.991 10 C 0.023 3.977 11 F -0.161 7.161 12 C -0.197 4.197 13 C -0.151 4.151 14 C -0.183 4.183 15 C 0.157 3.843 16 N -0.717 5.717 17 C 0.141 3.859 18 H 0.132 0.868 19 C -0.120 4.120 20 C -0.126 4.126 21 C 0.528 3.472 22 O -0.545 6.545 23 N -0.672 5.672 24 C 0.499 3.501 25 O -0.520 6.520 26 H 0.281 0.719 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.404 0.596 31 H 0.083 0.917 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -8.938 10.225 14.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.173 4.173 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.202 1.202 6 H -0.174 1.174 7 C -0.532 4.532 8 H 0.097 0.903 9 C 0.004 3.996 10 C 0.001 3.999 11 F -0.140 7.140 12 C -0.217 4.217 13 C -0.171 4.171 14 C -0.206 4.206 15 C 0.056 3.944 16 N -0.349 5.349 17 C 0.030 3.970 18 H 0.150 0.850 19 C -0.158 4.158 20 C -0.165 4.165 21 C 0.320 3.680 22 O -0.421 6.421 23 N -0.337 5.337 24 C 0.286 3.714 25 O -0.392 6.392 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.241 0.759 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.464 -9.084 10.019 14.241 hybrid contribution 0.663 1.178 -1.049 1.711 sum 5.127 -7.906 8.969 13.009 Atomic orbital electron populations 1.69855 1.08926 1.30023 1.36389 1.26395 0.95118 1.03631 0.92152 0.85494 0.78863 0.77138 0.79685 1.20026 1.20180 1.17440 1.19049 0.98446 0.92052 1.43652 0.90342 1.17403 0.96060 0.93430 0.92755 1.17967 1.04737 0.80636 0.96511 1.91249 1.92838 1.48871 1.81009 1.20688 1.04252 0.92724 1.04048 1.20405 1.01571 0.96247 0.98848 1.20340 1.02341 0.95972 1.01905 1.17695 0.93493 0.92972 0.90216 1.43743 1.46445 1.07817 1.36874 1.21105 0.96454 0.87244 0.92206 0.85033 1.22008 1.04255 0.97982 0.91584 1.21996 0.99092 0.96080 0.99350 1.21696 0.84930 0.79699 0.81685 1.90773 1.40107 1.37541 1.73668 1.45086 1.33988 1.44059 1.10549 1.22690 0.82383 0.77744 0.88613 1.90823 1.70770 1.60868 1.16715 0.90933 0.87252 0.85070 0.86091 0.75922 0.89876 0.85725 0.84062 0.83897 0.75481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.98 11.12 21.83 0.24 -44.73 16 2 C 0.04 2.15 4.52 85.24 0.38 2.53 16 3 Si 0.97 39.71 29.60 68.60 2.03 41.74 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.25 -9.43 7.11 99.48 0.71 -8.73 16 7 C -0.50 -26.10 8.12 23.35 0.19 -25.91 16 8 H 0.08 3.84 7.15 -2.91 -0.02 3.82 16 9 C 0.01 0.46 5.41 -21.12 -0.11 0.34 16 10 C 0.02 1.25 6.67 22.83 0.15 1.41 16 11 F -0.16 -9.28 14.28 44.97 0.64 -8.63 16 12 C -0.20 -9.30 9.99 22.28 0.22 -9.08 16 13 C -0.15 -6.24 10.03 22.40 0.22 -6.01 16 14 C -0.18 -7.32 8.59 22.36 0.19 -7.13 16 15 C 0.16 6.87 6.23 38.94 0.24 7.11 16 16 N -0.72 -24.33 4.94 -321.03 -1.59 -25.91 16 17 C 0.14 3.23 2.39 44.29 0.11 3.34 16 18 H 0.13 2.66 6.49 -2.39 -0.02 2.64 16 19 C -0.12 -1.61 5.56 30.76 0.17 -1.44 16 20 C -0.13 -1.22 6.07 29.90 0.18 -1.04 16 21 C 0.53 9.63 7.74 87.72 0.68 10.31 16 22 O -0.54 -13.54 17.87 -2.86 -0.05 -13.59 16 23 N -0.67 -14.09 5.09 -428.64 -2.18 -16.28 16 24 C 0.50 13.21 7.45 87.72 0.65 13.87 16 25 O -0.52 -19.22 16.49 -2.87 -0.05 -19.26 16 26 H 0.28 14.28 8.30 -92.70 -0.77 13.51 16 27 H 0.11 4.74 8.06 -2.91 -0.02 4.71 16 28 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.12 4.00 6.17 -2.91 -0.02 3.99 16 30 H 0.40 13.84 7.04 -92.70 -0.65 13.19 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.14 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.41 8.45 8.79 -92.70 -0.81 7.63 16 Total: -1.00 -72.57 302.12 2.04 -70.53 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.30 Total: 27.84 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 3.29 Total: -11.70 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -3.53 Total: -86.93 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.10 Total: -32.86 kcal Atomic # 9 Polarization: -9.28 SS G_CDS: 0.64 Total: -8.63 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -72.57 2.04 -70.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167578829.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.122 kcal (2) G-P(sol) polarization free energy of solvation -72.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds