Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86795 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47187 * 274.98430 * 3 2 1 5 5 H 1.48496 * 109.47065 * 34.99212 * 3 2 1 6 6 H 1.48508 * 109.46814 * 154.98854 * 3 2 1 7 7 C 1.39917 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00257 * 200.08150 * 7 2 1 9 9 C 1.41000 * 119.99946 * 20.08753 * 7 2 1 10 10 C 1.41000 * 120.32061 * 36.59757 * 9 7 2 11 11 F 1.35103 * 120.11710 * 0.02562 * 10 9 7 12 12 C 1.37735 * 119.76418 * 180.29757 * 10 9 7 13 13 C 1.38784 * 120.42888 * 359.72135 * 12 10 9 14 14 C 1.38226 * 120.66237 * 0.02562 * 13 12 10 15 15 C 1.38631 * 120.21942 * 0.02562 * 14 13 12 16 16 N 1.38803 * 120.21665 * 179.97438 * 15 14 13 17 17 C 1.46496 * 119.99995 * 0.02562 * 16 15 14 18 18 H 1.08997 * 109.57714 * 35.15636 * 17 16 15 19 19 C 1.53511 * 109.47762 * 155.51619 * 17 16 15 20 20 C 1.53243 * 108.43114 * 175.71568 * 19 17 16 21 21 C 1.50588 * 109.16365 * 304.24171 * 20 19 17 22 22 O 1.21220 * 119.35843 * 209.09146 * 21 20 19 23 23 N 1.34144 * 121.27680 * 29.12168 * 21 20 19 24 24 C 1.34134 * 122.58839 * 359.40339 * 23 21 20 25 25 O 1.21229 * 119.36152 * 180.57258 * 24 23 21 26 26 H 0.97004 * 120.00086 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.78521 * 179.70446 * 12 10 9 28 28 H 1.07999 * 119.66565 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.89077 * 179.97438 * 14 13 12 30 30 H 0.96994 * 119.99843 * 179.97438 * 16 15 14 31 31 H 1.08992 * 109.80780 * 55.96345 * 19 17 16 32 32 H 1.09003 * 109.71953 * 295.41691 * 19 17 16 33 33 H 1.09003 * 109.51999 * 184.33586 * 20 19 17 34 34 H 1.08999 * 109.57700 * 64.18136 * 20 19 17 35 35 H 0.96997 * 118.70111 * 179.43830 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3853 2.1072 -1.3947 5 1 1.4973 2.6198 0.8029 6 1 3.5894 1.4118 0.5920 7 6 2.0086 -1.2117 0.0005 8 1 3.0394 -1.2401 0.3217 9 6 1.3679 -2.3959 -0.4183 10 6 0.4398 -2.3659 -1.4794 11 9 0.1593 -1.2002 -2.1020 12 6 -0.1840 -3.5284 -1.8751 13 6 0.0994 -4.7295 -1.2402 14 6 1.0101 -4.7801 -0.2016 15 6 1.6529 -3.6263 0.2196 16 7 2.5670 -3.6770 1.2629 17 6 2.8556 -4.9529 1.9224 18 1 2.8203 -5.7590 1.1897 19 6 4.2502 -4.8948 2.5614 20 6 4.4837 -6.1974 3.3341 21 6 3.3711 -6.3872 4.3309 22 8 3.5894 -6.9951 5.3567 23 7 2.1429 -5.8972 4.1054 24 6 1.8329 -5.2058 2.9985 25 8 0.7062 -4.7804 2.8594 26 1 -0.4850 0.8401 0.0004 27 1 -0.8985 -3.5050 -2.6846 28 1 -0.3967 -5.6337 -1.5608 29 1 1.2209 -5.7214 0.2840 30 1 3.0152 -2.8679 1.5547 31 1 4.3081 -4.0482 3.2454 32 1 5.0069 -4.7897 1.7840 33 1 5.4376 -6.1437 3.8587 34 1 4.4972 -7.0369 2.6390 35 1 1.4519 -6.0484 4.7691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167578830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -86.362380 kcal Electronic energy + Delta-G solvation = -23360.193343 eV Core-core repulsion = 19658.573118 eV Total energy + Delta-G solvation = -3701.620225 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.85431 -41.40653 -38.93977 -37.70323 -35.78394 -34.54789 -33.52649 -32.49350 -29.81622 -28.45387 -26.57808 -24.99661 -23.95707 -22.97577 -21.13384 -20.41829 -19.21911 -17.66690 -17.38026 -17.17822 -16.53708 -16.28519 -15.48660 -15.01573 -14.82370 -14.65791 -14.41841 -14.16325 -13.89535 -13.67637 -13.61643 -12.97393 -12.73199 -12.53245 -12.03700 -11.71623 -11.46509 -11.43055 -11.21101 -11.17286 -10.91883 -10.59975 -10.41941 -10.21708 -10.14252 -10.08427 -9.52319 -9.06408 -8.97950 -7.15710 -6.73413 -6.48632 -4.25325 1.55760 2.67635 2.77267 2.83981 2.96437 3.12618 3.14558 3.19155 3.86207 4.01349 4.04734 4.44693 4.54151 4.68265 4.82363 4.93215 5.16809 5.40001 5.44824 5.61280 5.75863 6.04180 6.07652 6.08446 6.38755 6.45632 6.84835 6.95629 7.19144 7.27490 7.31161 7.40412 7.60725 7.82012 7.93243 8.04590 8.24487 8.47444 8.57247 8.87533 8.95717 10.32401 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.005235 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.181696 B = 5346.893530 C = 6223.358284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.081 3.919 3 Si 0.904 3.096 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.479 4.479 8 H 0.077 0.923 9 C 0.049 3.951 10 C 0.060 3.940 11 F -0.143 7.143 12 C -0.175 4.175 13 C -0.165 4.165 14 C -0.173 4.173 15 C 0.145 3.855 16 N -0.718 5.718 17 C 0.147 3.853 18 H 0.116 0.884 19 C -0.131 4.131 20 C -0.138 4.138 21 C 0.526 3.474 22 O -0.518 6.518 23 N -0.677 5.677 24 C 0.485 3.515 25 O -0.461 6.461 26 H 0.280 0.720 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.405 0.595 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 -8.606 3.813 12.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.138 4.138 3 Si 0.729 3.271 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.509 4.509 8 H 0.095 0.905 9 C 0.044 3.956 10 C 0.038 3.962 11 F -0.121 7.121 12 C -0.195 4.195 13 C -0.185 4.185 14 C -0.196 4.196 15 C 0.046 3.954 16 N -0.352 5.352 17 C 0.035 3.965 18 H 0.134 0.866 19 C -0.169 4.169 20 C -0.178 4.178 21 C 0.315 3.685 22 O -0.392 6.392 23 N -0.344 5.344 24 C 0.270 3.730 25 O -0.328 6.328 26 H 0.091 0.909 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.242 0.758 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.131 0.869 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.928 -8.574 4.090 12.373 hybrid contribution -0.208 1.213 0.476 1.320 sum 7.720 -7.361 4.566 11.603 Atomic orbital electron populations 1.69809 1.07594 1.29327 1.33946 1.25672 0.94523 1.00763 0.92846 0.86374 0.80303 0.81415 0.79012 1.19480 1.20616 1.18905 1.18899 0.98531 0.91332 1.42179 0.90509 1.17023 0.94937 0.91622 0.92027 1.17464 1.03195 0.80246 0.95256 1.91320 1.92573 1.47510 1.80740 1.20447 1.03313 0.92701 1.03040 1.19912 1.02535 0.95924 1.00151 1.19965 1.02833 0.95246 1.01557 1.17433 0.94604 0.93723 0.89591 1.43660 1.48256 1.06618 1.36707 1.20761 0.91037 0.92172 0.92519 0.86647 1.22062 0.96593 0.97387 1.00894 1.21883 0.97658 1.00301 0.97972 1.20984 0.83587 0.76491 0.87466 1.90765 1.82330 1.38749 1.27369 1.45155 1.13907 1.52011 1.23347 1.22592 0.91361 0.76408 0.82667 1.90861 1.21463 1.44273 1.76242 0.90947 0.88432 0.88539 0.89310 0.75817 0.89940 0.87911 0.86627 0.86855 0.75548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.30 11.13 55.55 0.62 -20.68 16 2 C 0.08 2.07 4.50 -17.32 -0.08 2.00 16 3 Si 0.90 19.14 29.60 -169.99 -5.03 14.10 16 4 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 7 C -0.48 -12.18 8.13 -37.91 -0.31 -12.49 16 8 H 0.08 1.80 7.13 -52.49 -0.37 1.42 16 9 C 0.05 1.26 5.41 -106.56 -0.58 0.68 16 10 C 0.06 1.58 6.68 -38.72 -0.26 1.33 16 11 F -0.14 -3.93 14.27 2.25 0.03 -3.90 16 12 C -0.17 -4.11 9.99 -39.56 -0.40 -4.50 16 13 C -0.17 -3.55 10.03 -39.38 -0.40 -3.95 16 14 C -0.17 -3.64 8.58 -39.44 -0.34 -3.98 16 15 C 0.15 3.21 6.22 -83.32 -0.52 2.69 16 16 N -0.72 -12.71 4.95 -52.68 -0.26 -12.97 16 17 C 0.15 1.91 2.41 -68.87 -0.17 1.75 16 18 H 0.12 1.37 6.49 -51.93 -0.34 1.04 16 19 C -0.13 -1.12 5.57 -26.34 -0.15 -1.26 16 20 C -0.14 -0.99 6.07 -27.81 -0.17 -1.16 16 21 C 0.53 5.73 7.74 -11.32 -0.09 5.64 16 22 O -0.52 -7.21 17.87 5.61 0.10 -7.11 16 23 N -0.68 -8.13 5.09 -11.75 -0.06 -8.19 16 24 C 0.49 7.18 7.45 -11.32 -0.08 7.09 16 25 O -0.46 -9.20 16.47 5.60 0.09 -9.11 16 26 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 27 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 28 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 29 H 0.09 1.62 6.17 -52.48 -0.32 1.30 16 30 H 0.40 7.12 7.03 -40.82 -0.29 6.83 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 4.70 8.79 -40.82 -0.36 4.34 16 LS Contribution 302.09 15.07 4.55 4.55 Total: -1.00 -32.75 302.09 -6.83 -39.58 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -3.35 Total: 9.89 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -3.52 Total: -6.16 kcal Atomic # 7 Polarization: -42.14 SS G_CDS: 0.30 Total: -41.85 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.19 Total: -16.21 kcal Atomic # 9 Polarization: -3.93 SS G_CDS: 0.03 Total: -3.90 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.75 -6.83 -39.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167578830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.783 kcal (2) G-P(sol) polarization free energy of solvation -32.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds