Wall clock time and date at job start Tue Mar 31 2020 06:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30907 * 1 3 3 Si 1.86795 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47187 * 274.98430 * 3 2 1 5 5 H 1.48496 * 109.47065 * 34.99212 * 3 2 1 6 6 H 1.48508 * 109.46814 * 154.98854 * 3 2 1 7 7 C 1.39917 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00257 * 200.08150 * 7 2 1 9 9 C 1.41000 * 119.99946 * 20.08753 * 7 2 1 10 10 C 1.41000 * 120.32061 * 36.59757 * 9 7 2 11 11 F 1.35103 * 120.11710 * 0.02562 * 10 9 7 12 12 C 1.37735 * 119.76418 * 180.29757 * 10 9 7 13 13 C 1.38784 * 120.42888 * 359.72135 * 12 10 9 14 14 C 1.38226 * 120.66237 * 0.02562 * 13 12 10 15 15 C 1.38631 * 120.21942 * 0.02562 * 14 13 12 16 16 N 1.38803 * 120.21665 * 179.97438 * 15 14 13 17 17 C 1.46496 * 119.99995 * 0.02562 * 16 15 14 18 18 H 1.08997 * 109.57714 * 35.15636 * 17 16 15 19 19 C 1.53511 * 109.47762 * 155.51619 * 17 16 15 20 20 C 1.53243 * 108.43114 * 175.71568 * 19 17 16 21 21 C 1.50588 * 109.16365 * 304.24171 * 20 19 17 22 22 O 1.21220 * 119.35843 * 209.09146 * 21 20 19 23 23 N 1.34144 * 121.27680 * 29.12168 * 21 20 19 24 24 C 1.34134 * 122.58839 * 359.40339 * 23 21 20 25 25 O 1.21229 * 119.36152 * 180.57258 * 24 23 21 26 26 H 0.97004 * 120.00086 * 359.97438 * 1 2 3 27 27 H 1.07998 * 119.78521 * 179.70446 * 12 10 9 28 28 H 1.07999 * 119.66565 * 180.02562 * 13 12 10 29 29 H 1.08003 * 119.89077 * 179.97438 * 14 13 12 30 30 H 0.96994 * 119.99843 * 179.97438 * 16 15 14 31 31 H 1.08992 * 109.80780 * 55.96345 * 19 17 16 32 32 H 1.09003 * 109.71953 * 295.41691 * 19 17 16 33 33 H 1.09003 * 109.51999 * 184.33586 * 20 19 17 34 34 H 1.08999 * 109.57700 * 64.18136 * 20 19 17 35 35 H 0.96997 * 118.70111 * 179.43830 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.3853 2.1072 -1.3947 5 1 1.4973 2.6198 0.8029 6 1 3.5894 1.4118 0.5920 7 6 2.0086 -1.2117 0.0005 8 1 3.0394 -1.2401 0.3217 9 6 1.3679 -2.3959 -0.4183 10 6 0.4398 -2.3659 -1.4794 11 9 0.1593 -1.2002 -2.1020 12 6 -0.1840 -3.5284 -1.8751 13 6 0.0994 -4.7295 -1.2402 14 6 1.0101 -4.7801 -0.2016 15 6 1.6529 -3.6263 0.2196 16 7 2.5670 -3.6770 1.2629 17 6 2.8556 -4.9529 1.9224 18 1 2.8203 -5.7590 1.1897 19 6 4.2502 -4.8948 2.5614 20 6 4.4837 -6.1974 3.3341 21 6 3.3711 -6.3872 4.3309 22 8 3.5894 -6.9951 5.3567 23 7 2.1429 -5.8972 4.1054 24 6 1.8329 -5.2058 2.9985 25 8 0.7062 -4.7804 2.8594 26 1 -0.4850 0.8401 0.0004 27 1 -0.8985 -3.5050 -2.6846 28 1 -0.3967 -5.6337 -1.5608 29 1 1.2209 -5.7214 0.2840 30 1 3.0152 -2.8679 1.5547 31 1 4.3081 -4.0482 3.2454 32 1 5.0069 -4.7897 1.7840 33 1 5.4376 -6.1437 3.8587 34 1 4.4972 -7.0369 2.6390 35 1 1.4519 -6.0484 4.7691 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167578830.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:44 Heat of formation + Delta-G solvation = -110.244279 kcal Electronic energy + Delta-G solvation = -23361.228940 eV Core-core repulsion = 19658.573118 eV Total energy + Delta-G solvation = -3702.655822 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.85464 -42.45017 -40.14050 -39.27897 -36.94839 -35.77748 -35.36389 -33.61275 -31.53109 -29.92168 -27.95661 -26.77496 -24.84193 -24.06882 -22.83962 -22.04662 -20.25544 -19.25040 -18.69238 -18.36190 -17.97788 -17.48317 -16.96141 -16.68575 -16.06805 -15.86498 -15.78526 -15.58714 -15.49949 -15.33173 -15.12890 -14.46130 -13.85723 -13.65651 -13.37448 -13.17760 -13.12824 -12.99823 -12.78058 -12.64142 -12.29690 -12.01420 -11.80817 -11.55886 -11.31873 -11.28444 -11.26231 -10.84716 -10.59115 -9.02466 -8.57847 -8.15098 -6.14274 0.53399 0.98154 1.06807 1.39555 1.50082 1.51798 1.77803 1.85987 2.26362 2.69090 2.88169 3.04782 3.56385 3.66405 3.73393 3.99844 4.11497 4.30543 4.42264 4.51119 4.65853 4.78448 4.81075 4.92527 5.06751 5.15328 5.20739 5.35790 5.54956 5.60122 5.81167 5.88176 6.04313 6.23896 6.43594 6.49016 6.71554 6.86309 6.95371 7.09938 7.17484 8.48901 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.005235 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.181696 B = 5346.893530 C = 6223.358284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.033 3.967 3 Si 0.971 3.029 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.245 1.245 7 C -0.499 4.499 8 H 0.089 0.911 9 C 0.008 3.992 10 C 0.021 3.979 11 F -0.161 7.161 12 C -0.197 4.197 13 C -0.152 4.152 14 C -0.182 4.182 15 C 0.158 3.842 16 N -0.716 5.716 17 C 0.142 3.858 18 H 0.137 0.863 19 C -0.119 4.119 20 C -0.126 4.126 21 C 0.527 3.473 22 O -0.546 6.546 23 N -0.674 5.674 24 C 0.495 3.505 25 O -0.523 6.523 26 H 0.278 0.722 27 H 0.108 0.892 28 H 0.131 0.869 29 H 0.121 0.879 30 H 0.404 0.596 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.208 -10.473 4.444 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.181 4.181 3 Si 0.793 3.207 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.168 1.168 7 C -0.529 4.529 8 H 0.107 0.893 9 C 0.003 3.997 10 C -0.001 4.001 11 F -0.140 7.140 12 C -0.217 4.217 13 C -0.172 4.172 14 C -0.205 4.205 15 C 0.057 3.943 16 N -0.348 5.348 17 C 0.031 3.969 18 H 0.154 0.846 19 C -0.157 4.157 20 C -0.165 4.165 21 C 0.319 3.681 22 O -0.422 6.422 23 N -0.338 5.338 24 C 0.282 3.718 25 O -0.394 6.394 26 H 0.088 0.912 27 H 0.126 0.874 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.241 0.759 31 H 0.100 0.900 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.163 0.837 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 10.689 -10.486 4.763 15.713 hybrid contribution -1.036 1.545 0.360 1.895 sum 9.653 -8.942 5.123 14.120 Atomic orbital electron populations 1.69914 1.09349 1.29877 1.36792 1.26549 0.95097 1.04225 0.92187 0.85349 0.79724 0.77037 0.78560 1.20054 1.20515 1.16814 1.19198 0.99083 0.91871 1.42793 0.89289 1.17427 0.96069 0.93353 0.92834 1.18004 1.04950 0.80508 0.96591 1.91251 1.92900 1.48689 1.81181 1.20683 1.04103 0.92780 1.04156 1.20399 1.01479 0.96269 0.99005 1.20331 1.02451 0.96240 1.01506 1.17630 0.94103 0.92862 0.89680 1.43781 1.46786 1.08622 1.35648 1.21213 0.92931 0.90443 0.92323 0.84624 1.22061 0.93907 0.98232 1.01501 1.22008 0.96735 1.00441 0.97306 1.21771 0.83541 0.75149 0.87663 1.90769 1.82534 1.40033 1.28903 1.45129 1.14748 1.51380 1.22565 1.22853 0.90643 0.75205 0.83146 1.90853 1.23889 1.47027 1.77656 0.91158 0.87351 0.85129 0.86087 0.75941 0.90030 0.85151 0.84019 0.83728 0.75679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.40 11.13 21.83 0.24 -47.16 16 2 C 0.03 1.75 4.50 85.24 0.38 2.13 16 3 Si 0.97 40.02 29.60 68.60 2.03 42.05 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 7 C -0.50 -25.81 8.13 23.35 0.19 -25.62 16 8 H 0.09 4.16 7.13 -2.91 -0.02 4.14 16 9 C 0.01 0.44 5.41 -21.12 -0.11 0.32 16 10 C 0.02 1.15 6.68 22.83 0.15 1.30 16 11 F -0.16 -9.34 14.27 44.97 0.64 -8.70 16 12 C -0.20 -9.34 9.99 22.28 0.22 -9.12 16 13 C -0.15 -6.29 10.03 22.40 0.22 -6.06 16 14 C -0.18 -7.29 8.58 22.36 0.19 -7.10 16 15 C 0.16 6.88 6.22 38.93 0.24 7.12 16 16 N -0.72 -24.08 4.95 -320.59 -1.59 -25.66 16 17 C 0.14 3.21 2.41 44.38 0.11 3.32 16 18 H 0.14 2.60 6.49 -2.39 -0.02 2.58 16 19 C -0.12 -1.48 5.57 30.85 0.17 -1.31 16 20 C -0.13 -1.15 6.07 29.89 0.18 -0.97 16 21 C 0.53 9.82 7.74 87.72 0.68 10.50 16 22 O -0.55 -13.84 17.87 -2.85 -0.05 -13.89 16 23 N -0.67 -14.87 5.09 -428.63 -2.18 -17.06 16 24 C 0.49 13.73 7.45 87.72 0.65 14.38 16 25 O -0.52 -20.68 16.47 -2.87 -0.05 -20.72 16 26 H 0.28 14.82 8.30 -92.71 -0.77 14.05 16 27 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 28 H 0.13 4.44 8.06 -2.91 -0.02 4.41 16 29 H 0.12 3.99 6.17 -2.91 -0.02 3.97 16 30 H 0.40 13.65 7.03 -92.71 -0.65 13.00 16 31 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 32 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.15 0.57 8.14 -2.39 -0.02 0.56 16 35 H 0.40 9.04 8.79 -92.71 -0.81 8.23 16 Total: -1.00 -75.60 302.09 2.04 -73.56 By element: Atomic # 1 Polarization: 28.98 SS G_CDS: -0.29 Total: 28.69 kcal Atomic # 6 Polarization: -14.38 SS G_CDS: 3.29 Total: -11.10 kcal Atomic # 7 Polarization: -86.35 SS G_CDS: -3.53 Total: -89.88 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.10 Total: -34.61 kcal Atomic # 9 Polarization: -9.34 SS G_CDS: 0.64 Total: -8.70 kcal Atomic # 14 Polarization: 40.02 SS G_CDS: 2.03 Total: 42.05 kcal Total: -75.60 2.04 -73.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167578830.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.686 kcal (2) G-P(sol) polarization free energy of solvation -75.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds