Wall clock time and date at job start Tue Mar 31 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.39149 * 119.99841 * 180.02562 * 12 11 10 14 14 N 1.32368 * 119.71567 * 359.72975 * 13 12 11 15 15 C 1.31981 * 121.64310 * 179.75128 * 14 13 12 16 16 C 1.38028 * 120.90140 * 0.52308 * 15 14 13 17 17 C 1.38862 * 119.34180 * 359.74330 * 16 15 14 18 18 C 1.50707 * 120.75671 * 179.97438 * 17 16 15 19 19 F 1.39909 * 109.46680 * 0.02562 * 18 17 16 20 20 F 1.39892 * 109.47119 * 120.01748 * 18 17 16 21 21 F 1.39902 * 109.47237 * 240.02538 * 18 17 16 22 22 C 1.38476 * 118.48892 * 359.97438 * 17 16 15 23 23 F 1.35102 * 120.47474 * 179.97438 * 22 17 16 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 32 32 H 1.07999 * 119.55009 * 180.26511 * 15 14 13 33 33 H 1.08003 * 120.32970 * 179.76321 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.4078 -4.2723 -0.0005 14 7 8.2630 -3.2620 -0.0049 15 6 9.5679 -3.4594 0.0001 16 6 10.0917 -4.7364 -0.0006 17 6 9.2299 -5.8253 -0.0012 18 6 9.7672 -7.2333 -0.0025 19 9 11.1658 -7.1987 -0.0023 20 9 9.3173 -7.9052 1.1390 21 9 9.3174 -7.9030 -1.1455 22 6 7.8657 -5.5879 -0.0006 23 9 6.9910 -6.6176 -0.0017 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.4094 -4.7552 -0.0009 32 1 10.2351 -2.6101 0.0006 33 1 11.1611 -4.8873 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:01 Heat of formation + Delta-G solvation = -164.691028 kcal Electronic energy + Delta-G solvation = -22602.811234 eV Core-core repulsion = 18355.937684 eV Total energy + Delta-G solvation = -4246.873550 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.089 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.56654 -49.29558 -48.02316 -47.97655 -40.52201 -36.72091 -33.99914 -33.17934 -31.89536 -29.84938 -27.47974 -26.52299 -23.72591 -23.34245 -21.93952 -20.46440 -19.03670 -19.01405 -18.86950 -17.77987 -17.51572 -16.72198 -16.53934 -16.31122 -15.11301 -15.03406 -14.82256 -14.79324 -14.66097 -14.41075 -14.17737 -14.13445 -14.08999 -13.87705 -13.84814 -12.98025 -12.67372 -12.58228 -12.40563 -11.96532 -11.16691 -11.10852 -10.69205 -10.21452 -10.13842 -9.96512 -9.84640 -9.74667 -9.27488 -8.59377 -7.93949 -6.09679 -4.08852 0.31162 0.76394 2.13136 2.86298 3.20650 3.22353 3.27715 3.35504 3.38486 3.54181 3.70068 3.99025 4.17019 4.30154 4.40565 4.69917 5.08039 5.22822 5.24037 5.36863 5.46414 5.56865 5.88362 5.92992 6.36757 6.38110 6.68814 6.88922 7.04395 7.16763 7.30110 7.71632 7.77825 8.46588 8.94222 9.52028 11.03626 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.037058 B = 0.002908 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.382319 B = 9625.712915 C =10190.689840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.116 4.116 11 C 0.125 3.875 12 N -0.704 5.704 13 C 0.396 3.604 14 N -0.498 5.498 15 C 0.154 3.846 16 C -0.182 4.182 17 C -0.131 4.131 18 C 0.515 3.485 19 F -0.171 7.171 20 F -0.169 7.169 21 F -0.170 7.170 22 C 0.020 3.980 23 F -0.121 7.121 24 H 0.264 0.736 25 H 0.019 0.981 26 H 0.015 0.985 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.414 0.586 32 H 0.175 0.825 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.716 -12.147 0.035 26.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.154 4.154 11 C 0.002 3.998 12 N -0.334 5.334 13 C 0.155 3.845 14 N -0.216 5.216 15 C -0.004 4.004 16 C -0.205 4.205 17 C -0.141 4.141 18 C 0.461 3.539 19 F -0.152 7.152 20 F -0.151 7.151 21 F -0.151 7.151 22 C -0.008 4.008 23 F -0.100 7.100 24 H 0.074 0.926 25 H 0.037 0.963 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.252 0.748 32 H 0.192 0.808 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 23.077 -11.045 0.031 25.584 hybrid contribution 0.338 -0.682 -0.019 0.762 sum 23.415 -11.728 0.012 26.188 Atomic orbital electron populations 1.69912 1.06347 1.27004 1.50847 1.25038 0.94753 0.99260 0.94435 0.86762 0.80372 0.83498 0.78574 1.20231 1.21351 1.18894 1.21095 0.89294 0.94553 1.51250 0.91017 1.19478 0.97306 0.91189 0.96661 1.21742 0.90535 1.01255 1.01912 1.21722 0.96033 0.79905 1.02125 1.45026 1.01009 1.10596 1.76799 1.18419 0.87682 0.86440 0.91926 1.67453 1.03806 1.32194 1.18097 1.22615 0.90068 0.96215 0.91543 1.21607 1.01148 0.91582 1.06148 1.20251 0.93158 0.93639 1.07048 1.17936 0.75642 0.85965 0.74374 1.93189 1.29082 1.96682 1.96234 1.93253 1.88915 1.82170 1.50735 1.93255 1.88919 1.82270 1.50632 1.17546 0.86269 0.84628 1.12348 1.91539 1.67783 1.56446 1.94205 0.92648 0.96273 0.96701 0.92047 0.92016 0.91484 0.91482 0.74843 0.80813 0.82856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.28 27.47 -169.99 -4.67 16.61 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 7 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C -0.01 -0.19 4.04 -27.89 -0.11 -0.30 16 10 C -0.12 -2.11 5.27 -26.73 -0.14 -2.25 16 11 C 0.12 1.90 5.70 -4.04 -0.02 1.87 16 12 N -0.70 -9.48 5.71 -60.34 -0.34 -9.82 16 13 C 0.40 5.14 7.49 -154.84 -1.16 3.98 16 14 N -0.50 -6.13 9.57 -12.36 -0.12 -6.25 16 15 C 0.15 1.35 11.17 -17.56 -0.20 1.15 16 16 C -0.18 -1.50 9.49 -39.43 -0.37 -1.87 16 17 C -0.13 -1.37 5.40 -104.30 -0.56 -1.94 16 18 C 0.52 5.30 3.07 36.01 0.11 5.41 16 19 F -0.17 -1.55 16.07 2.25 0.04 -1.51 16 20 F -0.17 -1.89 17.13 2.25 0.04 -1.85 16 21 F -0.17 -1.89 17.14 2.25 0.04 -1.85 16 22 C 0.02 0.24 7.20 -39.10 -0.28 -0.04 16 23 F -0.12 -1.54 16.03 2.25 0.04 -1.50 16 24 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.41 5.11 7.94 -40.82 -0.32 4.78 16 32 H 0.17 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.15 0.85 7.26 -52.48 -0.38 0.47 16 LS Contribution 304.68 15.07 4.59 4.59 Total: -1.00 -30.63 304.68 -5.96 -36.59 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -3.17 Total: -1.17 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -3.17 Total: -7.08 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: 0.31 Total: -42.84 kcal Atomic # 9 Polarization: -6.86 SS G_CDS: 0.15 Total: -6.71 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.63 -5.96 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.097 kcal (2) G-P(sol) polarization free energy of solvation -30.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds