Wall clock time and date at job start Tue Mar 31 2020 06:22:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00439 * 2 1 4 4 H 1.48499 * 109.47022 * 270.00274 * 3 2 1 5 5 H 1.48502 * 109.46769 * 29.99782 * 3 2 1 6 6 H 1.48495 * 109.47280 * 149.99957 * 3 2 1 7 7 C 1.37887 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99631 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47055 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46995 * 180.02562 * 11 10 9 13 13 C 1.39149 * 119.99841 * 180.02562 * 12 11 10 14 14 N 1.32368 * 119.71567 * 359.72975 * 13 12 11 15 15 C 1.31981 * 121.64310 * 179.75128 * 14 13 12 16 16 C 1.38028 * 120.90140 * 0.52308 * 15 14 13 17 17 C 1.38862 * 119.34180 * 359.74330 * 16 15 14 18 18 C 1.50707 * 120.75671 * 179.97438 * 17 16 15 19 19 F 1.39909 * 109.46680 * 0.02562 * 18 17 16 20 20 F 1.39892 * 109.47119 * 120.01748 * 18 17 16 21 21 F 1.39902 * 109.47237 * 240.02538 * 18 17 16 22 22 C 1.38476 * 118.48892 * 359.97438 * 17 16 15 23 23 F 1.35102 * 120.47474 * 179.97438 * 22 17 16 24 24 H 0.96999 * 119.99682 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47324 * 59.99304 * 9 7 2 26 26 H 1.09004 * 109.47043 * 299.99672 * 9 7 2 27 27 H 1.09001 * 109.46832 * 59.99966 * 10 9 7 28 28 H 1.08993 * 109.47194 * 299.99487 * 10 9 7 29 29 H 1.09001 * 109.46801 * 300.00272 * 11 10 9 30 30 H 1.09001 * 109.46998 * 59.99868 * 11 10 9 31 31 H 0.96998 * 120.00192 * 359.97438 * 12 11 10 32 32 H 1.07999 * 119.55009 * 180.26511 * 15 14 13 33 33 H 1.08003 * 120.32970 * 179.76321 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5515 -2.6368 -0.0001 12 7 6.0397 -4.0180 -0.0009 13 6 7.4078 -4.2723 -0.0005 14 7 8.2630 -3.2620 -0.0049 15 6 9.5679 -3.4594 0.0001 16 6 10.0917 -4.7364 -0.0006 17 6 9.2299 -5.8253 -0.0012 18 6 9.7672 -7.2333 -0.0025 19 9 11.1658 -7.1987 -0.0023 20 9 9.3173 -7.9052 1.1390 21 9 9.3174 -7.9030 -1.1455 22 6 7.8657 -5.5879 -0.0006 23 9 6.9910 -6.6176 -0.0017 24 1 -0.4849 0.8401 0.0004 25 1 3.8746 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8895 27 1 3.6584 -3.1503 -0.8903 28 1 3.6579 -3.1507 0.8896 29 1 5.9148 -2.1228 -0.8901 30 1 5.9149 -2.1230 0.8899 31 1 5.4094 -4.7552 -0.0009 32 1 10.2351 -2.6101 0.0006 33 1 11.1611 -4.8873 -0.0003 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168426758.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:00 Heat of formation + Delta-G solvation = -183.108585 kcal Electronic energy + Delta-G solvation = -22603.609879 eV Core-core repulsion = 18355.937684 eV Total energy + Delta-G solvation = -4247.672196 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.089 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.37822 -50.18540 -48.82001 -48.80672 -41.35172 -37.85124 -35.60533 -34.23555 -33.54451 -31.01023 -28.66116 -27.72872 -24.80321 -24.49765 -23.00549 -22.07517 -19.89938 -19.85680 -19.68898 -19.01854 -18.53878 -18.29059 -17.46072 -17.22946 -16.39538 -16.31440 -15.85271 -15.65662 -15.60382 -15.39769 -15.22156 -14.98130 -14.95289 -14.91771 -14.79669 -14.70757 -13.91027 -13.78953 -13.58042 -13.33988 -12.79074 -12.72617 -11.95579 -11.77153 -11.71708 -11.42683 -11.33084 -10.97567 -10.84057 -10.76103 -8.85809 -8.29216 -6.34171 -0.49416 -0.02421 1.32071 1.38733 1.40511 1.52586 1.93533 2.37598 2.41091 2.42328 2.71099 2.90115 3.06639 3.17748 3.37040 3.52553 3.95263 4.08959 4.21471 4.37448 4.48608 4.53526 4.70983 4.89386 4.91249 5.01980 5.24468 5.45318 5.55632 5.64241 5.89496 6.11993 6.27417 6.74397 6.89958 7.30829 8.87627 Molecular weight = 292.09amu Principal moments of inertia in cm(-1) A = 0.037058 B = 0.002908 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.382319 B = 9625.712915 C =10190.689840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.007 4.007 10 C -0.106 4.106 11 C 0.145 3.855 12 N -0.713 5.713 13 C 0.380 3.620 14 N -0.518 5.518 15 C 0.159 3.841 16 C -0.159 4.159 17 C -0.137 4.137 18 C 0.518 3.482 19 F -0.160 7.160 20 F -0.177 7.177 21 F -0.177 7.177 22 C 0.000 4.000 23 F -0.131 7.131 24 H 0.266 0.734 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.416 0.584 32 H 0.216 0.784 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.306 -11.104 0.030 29.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.195 4.195 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.045 4.045 10 C -0.144 4.144 11 C 0.022 3.978 12 N -0.345 5.345 13 C 0.141 3.859 14 N -0.235 5.235 15 C 0.000 4.000 16 C -0.182 4.182 17 C -0.147 4.147 18 C 0.464 3.536 19 F -0.142 7.142 20 F -0.158 7.158 21 F -0.158 7.158 22 C -0.028 4.028 23 F -0.110 7.110 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.253 0.747 32 H 0.232 0.768 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 26.704 -10.035 0.026 28.527 hybrid contribution -0.690 -1.103 -0.019 1.301 sum 26.013 -11.138 0.007 28.297 Atomic orbital electron populations 1.70078 1.08469 1.28230 1.52662 1.26077 0.95636 1.03785 0.94044 0.85612 0.79622 0.77872 0.79282 1.19103 1.21228 1.16440 1.21501 0.92214 0.93104 1.50511 0.95088 1.19419 0.93731 0.94219 0.97138 1.21520 0.92963 0.98383 1.01568 1.21298 0.93349 0.81083 1.02091 1.44796 1.01712 1.09709 1.78245 1.18456 0.87359 0.86997 0.93061 1.67490 1.05293 1.32343 1.18422 1.23354 0.89256 0.97765 0.89590 1.22062 1.02494 0.90622 1.02989 1.20435 0.92824 0.94342 1.07123 1.17908 0.76005 0.85804 0.73928 1.93207 1.28168 1.96626 1.96162 1.93240 1.89087 1.82348 1.51109 1.93242 1.89092 1.82447 1.51009 1.17646 0.86898 0.84247 1.13985 1.91506 1.68258 1.56773 1.94492 0.92503 0.95624 0.95742 0.92469 0.92470 0.91461 0.91516 0.74681 0.76802 0.79483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.83 13.96 21.45 0.30 -59.53 16 2 C 0.00 0.06 5.47 84.66 0.46 0.53 16 3 Si 0.95 43.40 27.47 68.60 1.88 45.28 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 7 C -0.54 -30.45 9.66 25.60 0.25 -30.20 16 8 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 9 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 10 C -0.11 -3.84 5.27 30.60 0.16 -3.68 16 11 C 0.15 4.25 5.70 86.38 0.49 4.74 16 12 N -0.71 -18.84 5.71 -344.81 -1.97 -20.81 16 13 C 0.38 9.40 7.49 133.06 1.00 10.40 16 14 N -0.52 -11.47 9.57 -193.02 -1.85 -13.31 16 15 C 0.16 2.16 11.17 84.62 0.95 3.10 16 16 C -0.16 -2.02 9.49 22.37 0.21 -1.80 16 17 C -0.14 -2.59 5.40 -19.66 -0.11 -2.70 16 18 C 0.52 9.75 3.07 71.24 0.22 9.97 16 19 F -0.16 -2.47 16.07 44.97 0.72 -1.75 16 20 F -0.18 -3.75 17.13 44.97 0.77 -2.98 16 21 F -0.18 -3.75 17.14 44.97 0.77 -2.98 16 22 C 0.00 0.00 7.20 22.58 0.16 0.16 16 23 F -0.13 -3.36 16.03 44.97 0.72 -2.64 16 24 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 25 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 26 H 0.02 1.04 7.57 -2.38 -0.02 1.03 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 31 H 0.42 10.39 7.94 -92.71 -0.74 9.65 16 32 H 0.22 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.19 1.10 7.26 -2.91 -0.02 1.07 16 Total: -1.00 -67.87 304.68 5.64 -62.23 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.38 Total: 6.15 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: 3.91 Total: -9.67 kcal Atomic # 7 Polarization: -90.14 SS G_CDS: -3.52 Total: -93.66 kcal Atomic # 9 Polarization: -13.32 SS G_CDS: 2.98 Total: -10.34 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -67.87 5.64 -62.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426758.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.878 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds