Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47125 * 2 1 4 4 C 1.34223 * 116.99634 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00406 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99556 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47205 * 299.99225 * 6 4 3 8 8 C 1.47201 * 109.47329 * 59.99883 * 6 4 3 9 9 N 4.97819 * 108.58932 * 26.82488 * 2 1 3 10 10 N 1.46504 * 109.46949 * 179.97438 * 6 4 3 11 11 C 1.39676 * 120.00098 * 154.99874 * 10 6 4 12 12 C 1.39291 * 119.94148 * 0.02562 * 11 10 6 13 13 C 1.38695 * 120.40256 * 179.97438 * 12 11 10 14 14 F 1.35105 * 119.86235 * 179.97438 * 13 12 11 15 15 C 1.37917 * 120.27744 * 0.02562 * 13 12 11 16 16 C 1.40710 * 119.86402 * 359.97438 * 15 13 12 17 17 C 1.41416 * 120.19529 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99386 * 24.34207 * 17 16 15 19 19 C 1.39921 * 119.99897 * 204.34268 * 17 16 15 20 20 N 1.30828 * 120.00113 * 17.74790 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 197.74206 * 19 17 16 22 22 H 1.48503 * 109.47146 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47216 * 120.00330 * 21 19 17 24 24 H 1.48500 * 109.47474 * 240.00546 * 21 19 17 25 25 C 1.38301 * 119.93895 * 179.72369 * 11 10 6 26 26 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46957 * 300.00653 * 1 2 3 28 28 H 1.09000 * 109.47122 * 60.00036 * 1 2 3 29 29 H 1.08994 * 109.47132 * 239.99803 * 2 1 3 30 30 H 1.09005 * 109.46932 * 119.99539 * 2 1 3 31 31 H 0.97003 * 120.00305 * 334.72292 * 10 6 4 32 32 H 1.08008 * 119.79612 * 0.02562 * 12 11 10 33 33 H 1.08000 * 120.06913 * 179.97438 * 15 13 12 34 34 H 0.97001 * 120.00118 * 179.97438 * 20 19 17 35 35 H 1.07999 * 120.13484 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5846 3.4692 -0.8912 8 6 3.4675 3.6564 1.2007 9 7 3.1170 4.2107 2.1293 10 7 5.3837 2.8607 -0.0010 11 6 6.1386 3.9187 -0.5127 12 6 5.4991 5.0463 -1.0223 13 6 6.2393 6.1026 -1.5323 14 9 5.6077 7.1909 -2.0243 15 6 7.6173 6.0463 -1.5402 16 6 8.2751 4.9126 -1.0282 17 6 9.6878 4.8472 -1.0333 18 1 10.2703 5.7565 -1.0465 19 6 10.3306 3.6045 -1.0214 20 7 9.6712 2.5237 -1.3513 21 14 12.1303 3.4885 -0.5345 22 1 12.6430 4.8434 -0.2080 23 1 12.2658 2.6087 0.6542 24 1 12.9126 2.9212 -1.6620 25 6 7.5198 3.8474 -0.5068 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8284 2.0769 0.3580 32 1 4.4203 5.0988 -1.0196 33 1 8.1903 6.8705 -1.9384 34 1 10.1170 1.6622 -1.3434 35 1 8.0159 2.9751 -0.1076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170370441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = -78.471363 kcal Electronic energy + Delta-G solvation = -22213.754469 eV Core-core repulsion = 18512.476424 eV Total energy + Delta-G solvation = -3701.278045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -47.79022 -40.89548 -38.30937 -36.99698 -36.52662 -34.85735 -33.34225 -32.09057 -30.01868 -29.38330 -26.64877 -25.56716 -23.66373 -21.91930 -21.23134 -20.75864 -18.93678 -17.95163 -17.53750 -17.19423 -16.55287 -15.73156 -15.43308 -15.14440 -14.70166 -14.44913 -14.32471 -14.21829 -14.04966 -13.59893 -13.19034 -13.07958 -12.89294 -12.71049 -12.41808 -12.20179 -11.99936 -11.86865 -11.66404 -11.38227 -11.20140 -10.81487 -10.77957 -10.69600 -10.55947 -10.23140 -9.82161 -9.60036 -9.00760 -7.51559 -6.97126 -6.65318 -4.56746 1.75742 2.04618 2.53658 2.63128 2.80861 2.88119 3.02627 3.07170 3.10266 3.80940 3.84173 3.98368 4.39076 4.49055 4.64974 4.68407 4.93958 4.98602 5.34727 5.47934 5.48518 5.57487 5.66710 6.08724 6.15016 6.45708 6.52787 6.87447 7.00107 7.09970 7.23045 7.37602 7.48138 7.53764 7.72889 7.90622 8.14351 8.21443 8.51082 8.73795 8.76683 10.02999 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.004242 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.230285 B = 6599.779475 C = 7769.303818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.472 3.528 5 O -0.478 6.478 6 C 0.272 3.728 7 H 0.156 0.844 8 C 0.195 3.805 9 N -0.400 5.400 10 N -0.727 5.727 11 C 0.230 3.770 12 C -0.337 4.337 13 C 0.147 3.853 14 F -0.166 7.166 15 C -0.282 4.282 16 C 0.157 3.843 17 C -0.451 4.451 18 H 0.083 0.917 19 C 0.077 3.923 20 N -0.779 5.779 21 Si 0.910 3.090 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.224 4.224 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.413 0.587 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.283 0.717 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 -6.546 0.729 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.268 6.268 4 C 0.310 3.690 5 O -0.362 6.362 6 C 0.159 3.841 7 H 0.173 0.827 8 C -0.126 4.126 9 N -0.077 5.077 10 N -0.365 5.365 11 C 0.133 3.867 12 C -0.360 4.360 13 C 0.128 3.872 14 F -0.145 7.145 15 C -0.303 4.303 16 C 0.153 3.847 17 C -0.480 4.480 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.403 5.403 21 Si 0.734 3.266 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.199 1.199 25 C -0.247 4.247 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.251 0.749 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.094 0.906 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.608 -6.204 2.008 13.314 hybrid contribution 0.967 -0.633 -0.194 1.172 sum -10.641 -6.837 1.815 12.778 Atomic orbital electron populations 1.21821 0.92363 1.03082 1.03762 1.23138 0.95537 0.79488 1.03073 1.86504 1.23387 1.33142 1.83731 1.23016 0.81308 0.91378 0.73268 1.90724 1.60253 1.41741 1.43528 1.17149 0.85282 0.88580 0.93092 0.82723 1.29409 0.93714 0.94665 0.94826 1.81157 1.07766 1.08265 1.10522 1.44113 0.99264 1.22054 1.71026 1.17182 0.90538 0.85763 0.93239 1.19676 0.97406 0.97173 1.21744 1.17148 0.90496 0.82648 0.96926 1.91344 1.83258 1.53728 1.86124 1.20888 0.91125 1.03343 1.14965 1.17066 0.93079 0.88899 0.85617 1.19638 0.91290 0.93291 1.43792 0.89856 1.25953 1.01005 0.95217 0.92086 1.69834 1.38641 0.99993 1.31843 0.86230 0.81590 0.79730 0.79073 1.18245 1.19583 1.19855 1.20773 0.89082 1.03511 1.11375 0.90062 0.91412 0.91211 0.90609 0.90930 0.74909 0.88243 0.87744 0.90612 0.85557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.35 -4.04 10.13 -39.24 -0.40 -4.44 16 4 C 0.47 6.31 7.29 36.01 0.26 6.57 16 5 O -0.48 -7.35 15.59 -18.75 -0.29 -7.65 16 6 C 0.27 3.89 2.65 -71.87 -0.19 3.70 16 7 H 0.16 1.93 6.47 -51.93 -0.34 1.59 16 8 C 0.20 3.07 14.67 -20.73 -0.30 2.77 16 9 N -0.40 -6.99 18.54 42.19 0.78 -6.21 16 10 N -0.73 -12.62 5.08 -56.10 -0.28 -12.91 16 11 C 0.23 4.84 6.61 -83.87 -0.55 4.29 16 12 C -0.34 -7.11 9.12 -39.02 -0.36 -7.47 16 13 C 0.15 3.36 7.28 -39.53 -0.29 3.07 16 14 F -0.17 -3.60 17.26 2.25 0.04 -3.56 16 15 C -0.28 -6.79 9.76 -38.77 -0.38 -7.17 16 16 C 0.16 3.96 5.57 -106.86 -0.60 3.36 16 17 C -0.45 -11.26 9.05 -37.74 -0.34 -11.61 16 18 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 19 C 0.08 1.81 5.14 -17.35 -0.09 1.72 16 20 N -0.78 -18.74 10.96 55.55 0.61 -18.13 16 21 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 22 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 C -0.22 -5.34 8.53 -38.66 -0.33 -5.67 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 30 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.41 7.09 7.81 -40.82 -0.32 6.77 16 32 H 0.10 1.84 6.14 -52.48 -0.32 1.52 16 33 H 0.10 2.41 8.06 -52.49 -0.42 1.98 16 34 H 0.28 6.18 8.30 -40.82 -0.34 5.84 16 35 H 0.13 3.10 6.16 -52.49 -0.32 2.77 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -27.78 322.16 -5.66 -33.44 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -3.39 Total: 8.24 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.55 Total: -6.24 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 1.11 Total: -37.24 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.69 Total: -12.09 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.04 Total: -3.56 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.78 -5.66 -33.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.031 kcal (2) G-P(sol) polarization free energy of solvation -27.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds