Wall clock time and date at job start Tue Mar 31 2020 07:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45206 * 109.47125 * 2 1 4 4 C 1.34223 * 116.99634 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00406 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99556 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47205 * 299.99225 * 6 4 3 8 8 C 1.47201 * 109.47329 * 59.99883 * 6 4 3 9 9 N 4.97819 * 108.58932 * 26.82488 * 2 1 3 10 10 N 1.46504 * 109.46949 * 179.97438 * 6 4 3 11 11 C 1.39676 * 120.00098 * 154.99874 * 10 6 4 12 12 C 1.39291 * 119.94148 * 0.02562 * 11 10 6 13 13 C 1.38695 * 120.40256 * 179.97438 * 12 11 10 14 14 F 1.35105 * 119.86235 * 179.97438 * 13 12 11 15 15 C 1.37917 * 120.27744 * 0.02562 * 13 12 11 16 16 C 1.40710 * 119.86402 * 359.97438 * 15 13 12 17 17 C 1.41416 * 120.19529 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99386 * 24.34207 * 17 16 15 19 19 C 1.39921 * 119.99897 * 204.34268 * 17 16 15 20 20 N 1.30828 * 120.00113 * 17.74790 * 19 17 16 21 21 Si 1.86798 * 119.99841 * 197.74206 * 19 17 16 22 22 H 1.48503 * 109.47146 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47216 * 120.00330 * 21 19 17 24 24 H 1.48500 * 109.47474 * 240.00546 * 21 19 17 25 25 C 1.38301 * 119.93895 * 179.72369 * 11 10 6 26 26 H 1.08997 * 109.47588 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46957 * 300.00653 * 1 2 3 28 28 H 1.09000 * 109.47122 * 60.00036 * 1 2 3 29 29 H 1.08994 * 109.47132 * 239.99803 * 2 1 3 30 30 H 1.09005 * 109.46932 * 119.99539 * 2 1 3 31 31 H 0.97003 * 120.00305 * 334.72292 * 10 6 4 32 32 H 1.08008 * 119.79612 * 0.02562 * 12 11 10 33 33 H 1.08000 * 120.06913 * 179.97438 * 15 13 12 34 34 H 0.97001 * 120.00118 * 179.97438 * 20 19 17 35 35 H 1.07999 * 120.13484 * 0.02562 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 -0.0012 7 1 3.5846 3.4692 -0.8912 8 6 3.4675 3.6564 1.2007 9 7 3.1170 4.2107 2.1293 10 7 5.3837 2.8607 -0.0010 11 6 6.1386 3.9187 -0.5127 12 6 5.4991 5.0463 -1.0223 13 6 6.2393 6.1026 -1.5323 14 9 5.6077 7.1909 -2.0243 15 6 7.6173 6.0463 -1.5402 16 6 8.2751 4.9126 -1.0282 17 6 9.6878 4.8472 -1.0333 18 1 10.2703 5.7565 -1.0465 19 6 10.3306 3.6045 -1.0214 20 7 9.6712 2.5237 -1.3513 21 14 12.1303 3.4885 -0.5345 22 1 12.6430 4.8434 -0.2080 23 1 12.2658 2.6087 0.6542 24 1 12.9126 2.9212 -1.6620 25 6 7.5198 3.8474 -0.5068 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.8284 2.0769 0.3580 32 1 4.4203 5.0988 -1.0196 33 1 8.1903 6.8705 -1.9384 34 1 10.1170 1.6622 -1.3434 35 1 8.0159 2.9751 -0.1076 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170370441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:26 Heat of formation + Delta-G solvation = -92.996594 kcal Electronic energy + Delta-G solvation = -22214.384330 eV Core-core repulsion = 18512.476424 eV Total energy + Delta-G solvation = -3701.907906 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.56159 -41.97172 -39.85219 -38.25079 -37.78018 -36.39524 -35.03669 -32.84029 -31.51286 -31.08524 -28.17147 -27.35626 -24.49123 -23.23793 -22.64263 -22.43122 -20.21265 -19.39801 -19.02352 -18.32404 -17.58436 -17.36761 -16.92956 -16.78599 -16.30166 -16.19400 -15.89810 -15.51680 -15.17266 -14.82742 -14.56177 -14.44111 -14.02935 -13.86682 -13.65357 -13.61246 -13.27206 -13.05935 -12.96149 -12.78482 -12.53310 -12.52555 -12.18375 -12.02613 -11.80789 -11.58141 -11.55921 -11.29215 -10.72166 -9.32230 -8.72183 -8.34325 -6.43452 0.65473 0.86968 0.93312 1.03099 1.27974 1.43534 1.52544 1.57788 1.66799 2.22663 2.52588 2.63060 2.73342 3.40625 3.64345 3.79163 3.81991 4.02945 4.05427 4.36106 4.48682 4.67680 4.74558 4.81069 4.94461 5.06161 5.08044 5.21333 5.33362 5.36118 5.53610 5.74578 5.95979 6.06607 6.16223 6.35401 6.37567 6.65348 6.71415 6.90967 6.95946 8.29565 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.004242 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.230285 B = 6599.779475 C = 7769.303818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.349 6.349 4 C 0.483 3.517 5 O -0.500 6.500 6 C 0.273 3.727 7 H 0.182 0.818 8 C 0.212 3.788 9 N -0.428 5.428 10 N -0.722 5.722 11 C 0.244 3.756 12 C -0.332 4.332 13 C 0.143 3.857 14 F -0.159 7.159 15 C -0.306 4.306 16 C 0.134 3.866 17 C -0.486 4.486 18 H 0.079 0.921 19 C 0.042 3.958 20 N -0.805 5.805 21 Si 0.980 3.020 22 H -0.260 1.260 23 H -0.264 1.264 24 H -0.265 1.265 25 C -0.246 4.246 26 H 0.103 0.897 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.414 0.586 32 H 0.131 0.869 33 H 0.102 0.898 34 H 0.291 0.709 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.316 -7.472 0.777 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.323 3.677 5 O -0.386 6.386 6 C 0.161 3.839 7 H 0.198 0.802 8 C -0.110 4.110 9 N -0.105 5.105 10 N -0.358 5.358 11 C 0.145 3.855 12 C -0.355 4.355 13 C 0.123 3.877 14 F -0.138 7.138 15 C -0.327 4.327 16 C 0.130 3.870 17 C -0.515 4.515 18 H 0.097 0.903 19 C -0.176 4.176 20 N -0.429 5.429 21 Si 0.801 3.199 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.190 1.190 25 C -0.270 4.270 26 H 0.122 0.878 27 H 0.084 0.916 28 H 0.091 0.909 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.252 0.748 32 H 0.149 0.851 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.826 -7.140 2.060 14.824 hybrid contribution 1.157 -0.385 -0.217 1.238 sum -11.670 -7.526 1.844 14.008 Atomic orbital electron populations 1.21855 0.90225 1.04595 1.03815 1.23496 0.97172 0.78056 1.03441 1.86504 1.21881 1.34973 1.83069 1.22641 0.81900 0.90401 0.72803 1.90730 1.60928 1.42200 1.44752 1.17363 0.83376 0.89737 0.93447 0.80152 1.29480 0.93000 0.93959 0.94522 1.81185 1.08647 1.09337 1.11327 1.44039 1.00680 1.21000 1.70125 1.17112 0.90001 0.86449 0.91931 1.19954 0.98929 0.96247 1.20347 1.17272 0.90269 0.83258 0.96881 1.91353 1.82975 1.53488 1.86010 1.20970 0.92036 1.03456 1.16248 1.17366 0.93728 0.89730 0.86178 1.19863 0.91725 0.94060 1.45843 0.90283 1.26696 1.05076 0.94379 0.91399 1.69862 1.40457 1.00605 1.32022 0.85178 0.76268 0.79539 0.78902 1.18362 1.18898 1.19012 1.20720 0.90400 1.03151 1.12700 0.87813 0.91618 0.90865 0.90081 0.90845 0.74775 0.85120 0.87952 0.89789 0.86740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 71.98 0.74 -0.75 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.35 -7.22 10.13 -51.35 -0.52 -7.74 16 4 C 0.48 11.96 7.29 71.24 0.52 12.48 16 5 O -0.50 -14.64 15.59 21.97 0.34 -14.30 16 6 C 0.27 7.18 2.65 42.44 0.11 7.29 16 7 H 0.18 3.87 6.47 -2.39 -0.02 3.85 16 8 C 0.21 6.23 14.67 89.43 1.31 7.54 16 9 N -0.43 -14.26 18.54 20.02 0.37 -13.89 16 10 N -0.72 -24.10 5.08 -331.40 -1.68 -25.78 16 11 C 0.24 10.10 6.61 38.16 0.25 10.35 16 12 C -0.33 -13.45 9.12 22.63 0.21 -13.25 16 13 C 0.14 6.42 7.28 22.30 0.16 6.59 16 14 F -0.16 -6.74 17.26 44.97 0.78 -5.96 16 15 C -0.31 -15.01 9.76 22.80 0.22 -14.79 16 16 C 0.13 6.90 5.57 -21.31 -0.12 6.78 16 17 C -0.49 -24.99 9.05 23.46 0.21 -24.78 16 18 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 19 C 0.04 1.99 5.14 85.25 0.44 2.43 16 20 N -0.81 -39.17 10.96 21.82 0.24 -38.93 16 21 Si 0.98 36.23 29.59 68.60 2.03 38.26 16 22 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 23 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 24 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.25 -11.91 8.53 22.87 0.20 -11.71 16 26 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 28 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.20 8.13 -2.39 -0.02 1.18 16 30 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 31 H 0.41 13.88 7.81 -92.71 -0.72 13.16 16 32 H 0.13 4.40 6.14 -2.91 -0.02 4.38 16 33 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.29 12.74 8.30 -92.71 -0.77 11.97 16 35 H 0.11 5.75 6.16 -2.91 -0.02 5.74 16 Total: -1.00 -59.70 322.16 6.69 -53.01 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.43 Total: 25.91 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 4.70 Total: -10.58 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -1.07 Total: -78.61 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.18 Total: -22.04 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.78 Total: -5.96 kcal Atomic # 14 Polarization: 36.23 SS G_CDS: 2.03 Total: 38.26 kcal Total: -59.70 6.69 -53.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.991 kcal (2) G-P(sol) polarization free energy of solvation -59.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds