Wall clock time and date at job start Tue Mar 31 2020 07:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47199 * 2 1 4 4 C 1.34227 * 116.99941 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00082 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00198 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.46760 * 300.00206 * 6 4 3 8 8 C 1.47196 * 109.47098 * 59.99663 * 6 4 3 9 9 N 4.97817 * 108.59033 * 26.82843 * 2 1 3 10 10 N 1.46493 * 109.47324 * 180.02562 * 6 4 3 11 11 C 1.38800 * 120.00276 * 155.00043 * 10 6 4 12 12 C 1.38637 * 120.21542 * 359.97438 * 11 10 6 13 13 C 1.38226 * 120.21826 * 180.02562 * 12 11 10 14 14 C 1.38792 * 120.66349 * 359.97438 * 13 12 11 15 15 C 1.37740 * 120.42774 * 359.97438 * 14 13 12 16 16 F 1.35100 * 120.11694 * 180.02562 * 15 14 13 17 17 C 1.40996 * 119.76584 * 0.30309 * 15 14 13 18 18 C 1.40999 * 120.32298 * 179.69966 * 17 15 14 19 19 H 1.07999 * 120.00188 * 143.53858 * 18 17 15 20 20 C 1.39909 * 119.99588 * 323.54095 * 18 17 15 21 21 N 1.30907 * 120.00425 * 339.76529 * 20 18 17 22 22 Si 1.86803 * 119.99983 * 159.78021 * 20 18 17 23 23 H 1.48497 * 109.47748 * 89.99375 * 22 20 18 24 24 H 1.48504 * 109.47030 * 209.99850 * 22 20 18 25 25 H 1.48501 * 109.46625 * 329.98987 * 22 20 18 26 26 H 1.08994 * 109.46816 * 59.99920 * 1 2 3 27 27 H 1.08996 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47002 * 299.99717 * 1 2 3 29 29 H 1.09001 * 109.47002 * 240.00283 * 2 1 3 30 30 H 1.09006 * 109.47239 * 120.00113 * 2 1 3 31 31 H 0.96997 * 120.00063 * 334.99280 * 10 6 4 32 32 H 1.07998 * 119.89140 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.67000 * 179.97438 * 13 12 11 34 34 H 1.07996 * 119.78779 * 180.02562 * 14 13 12 35 35 H 0.97000 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5852 3.4698 -0.8888 8 6 3.4667 3.6557 1.2030 9 7 3.1171 4.2105 2.1295 10 7 5.3838 2.8607 0.0010 11 6 6.1339 3.9124 -0.5065 12 6 5.5033 5.0376 -1.0149 13 6 6.2502 6.0848 -1.5209 14 6 7.6369 6.0269 -1.5273 15 6 8.2913 4.9226 -1.0279 16 9 9.6414 4.8731 -1.0368 17 6 7.5471 3.8414 -0.5128 18 6 8.2048 2.7025 -0.0045 19 1 7.8035 2.1857 0.8548 20 6 9.3773 2.2419 -0.6133 21 7 9.6547 2.5877 -1.8450 22 14 10.5468 1.1331 0.3314 23 1 10.1700 -0.2862 0.1110 24 1 11.9350 1.3567 -0.1461 25 1 10.4651 1.4478 1.7804 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8283 2.0749 0.3558 32 1 4.4249 5.0956 -1.0165 33 1 5.7498 6.9568 -1.9151 34 1 8.2066 6.8534 -1.9256 35 1 10.4674 2.2680 -2.2672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170370602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:22 Heat of formation + Delta-G solvation = -66.994641 kcal Electronic energy + Delta-G solvation = -22732.432320 eV Core-core repulsion = 19031.651944 eV Total energy + Delta-G solvation = -3700.780377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.93745 -40.79537 -38.32319 -36.87997 -36.44294 -34.33240 -33.60421 -32.03464 -30.30085 -29.03750 -26.98780 -25.08600 -23.64717 -21.86129 -21.09065 -20.62359 -18.74759 -17.88609 -17.36772 -17.08153 -16.45767 -16.21260 -15.26529 -15.02826 -14.29049 -14.25775 -14.07467 -13.94190 -13.72095 -13.42633 -13.09494 -12.98630 -12.78919 -12.62516 -12.29911 -12.11337 -11.81401 -11.77749 -11.51583 -11.32704 -11.22182 -10.93401 -10.73856 -10.67322 -10.55686 -10.24002 -9.62763 -9.37023 -9.02219 -7.26165 -6.84354 -6.65536 -4.32885 1.86187 2.14389 2.61692 2.68284 2.78373 2.95497 3.12921 3.13922 3.19898 3.89806 4.00228 4.17436 4.50471 4.62527 4.70759 4.74787 4.99840 5.04705 5.36378 5.41258 5.53568 5.71295 5.94135 5.98884 6.17818 6.28291 6.31623 6.81221 7.07440 7.17607 7.20284 7.45594 7.50235 7.56426 7.71542 7.96181 8.09454 8.38904 8.43931 8.78581 8.85850 10.24471 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.005103 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.411948 B = 5486.017262 C = 6651.337092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.469 3.531 5 O -0.474 6.474 6 C 0.272 3.728 7 H 0.152 0.848 8 C 0.197 3.803 9 N -0.405 5.405 10 N -0.713 5.713 11 C 0.125 3.875 12 C -0.180 4.180 13 C -0.168 4.168 14 C -0.167 4.167 15 C 0.061 3.939 16 F -0.141 7.141 17 C 0.057 3.943 18 C -0.474 4.474 19 H 0.079 0.921 20 C 0.083 3.917 21 N -0.780 5.780 22 Si 0.904 3.096 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.262 1.262 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.417 0.583 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 -3.793 -0.099 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.269 6.269 4 C 0.308 3.692 5 O -0.358 6.358 6 C 0.158 3.842 7 H 0.169 0.831 8 C -0.125 4.125 9 N -0.082 5.082 10 N -0.352 5.352 11 C 0.027 3.973 12 C -0.203 4.203 13 C -0.188 4.188 14 C -0.187 4.187 15 C 0.040 3.960 16 F -0.119 7.119 17 C 0.051 3.949 18 C -0.504 4.504 19 H 0.097 0.903 20 C -0.137 4.137 21 N -0.404 5.404 22 Si 0.729 3.271 23 H -0.197 1.197 24 H -0.202 1.202 25 H -0.186 1.186 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.257 0.743 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.692 -3.293 1.047 13.154 hybrid contribution 1.185 -1.151 -0.018 1.652 sum -11.507 -4.444 1.029 12.378 Atomic orbital electron populations 1.21814 0.92447 1.03023 1.03688 1.23120 0.95445 0.79633 1.03072 1.86495 1.23528 1.33018 1.83901 1.23058 0.81218 0.91513 0.73444 1.90743 1.60186 1.41703 1.43148 1.17105 0.85620 0.88557 0.92877 0.83115 1.29521 0.93480 0.94588 0.94930 1.81072 1.08060 1.08512 1.10544 1.43672 0.98554 1.22116 1.70879 1.17461 0.90100 0.88096 1.01593 1.20106 0.97323 0.95015 1.07832 1.19910 0.92526 0.98801 1.07558 1.20504 0.94797 0.97927 1.05500 1.17431 0.76618 0.94322 1.07672 1.91330 1.29520 1.96530 1.94545 1.17001 0.88506 0.93324 0.96053 1.18958 1.07761 1.10477 1.13195 0.90288 1.25671 0.97680 0.96195 0.94129 1.69780 1.23568 1.36302 1.10716 0.86371 0.79599 0.80017 0.81154 1.19656 1.20155 1.18593 0.91260 0.90132 0.91449 0.90654 0.90961 0.74276 0.88631 0.88155 0.88168 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.22 10.13 -39.25 -0.40 -4.61 16 4 C 0.47 6.64 7.29 36.01 0.26 6.90 16 5 O -0.47 -7.89 15.59 -18.75 -0.29 -8.18 16 6 C 0.27 4.01 2.65 -71.87 -0.19 3.82 16 7 H 0.15 1.83 6.47 -51.93 -0.34 1.50 16 8 C 0.20 3.11 14.66 -20.79 -0.30 2.81 16 9 N -0.40 -7.07 18.53 42.12 0.78 -6.29 16 10 N -0.71 -13.36 4.99 -55.64 -0.28 -13.64 16 11 C 0.13 2.71 6.64 -83.32 -0.55 2.16 16 12 C -0.18 -3.55 9.11 -39.44 -0.36 -3.91 16 13 C -0.17 -3.39 10.03 -39.38 -0.40 -3.79 16 14 C -0.17 -3.74 9.99 -39.56 -0.40 -4.14 16 15 C 0.06 1.56 6.68 -38.72 -0.26 1.30 16 16 F -0.14 -3.76 14.27 2.25 0.03 -3.73 16 17 C 0.06 1.42 5.41 -106.56 -0.58 0.84 16 18 C -0.47 -12.11 8.14 -37.91 -0.31 -12.42 16 19 H 0.08 1.93 7.13 -52.49 -0.37 1.55 16 20 C 0.08 2.10 4.50 -17.32 -0.08 2.02 16 21 N -0.78 -20.49 11.13 55.55 0.62 -19.87 16 22 Si 0.90 19.22 29.61 -169.99 -5.03 14.19 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.28 -5.83 7.11 56.52 0.40 -5.42 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.42 8.24 6.22 -40.82 -0.25 7.98 16 32 H 0.10 1.56 6.14 -52.49 -0.32 1.24 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -29.44 318.21 -5.70 -35.13 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -3.38 Total: 6.43 kcal Atomic # 6 Polarization: -1.68 SS G_CDS: -2.55 Total: -4.23 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 1.12 Total: -39.80 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.69 Total: -12.80 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.73 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.44 -5.70 -35.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.860 kcal (2) G-P(sol) polarization free energy of solvation -29.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds