Wall clock time and date at job start Tue Mar 31 2020 07:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47199 * 2 1 4 4 C 1.34227 * 116.99941 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00082 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00198 * 180.02562 * 4 3 2 7 7 H 1.09006 * 109.46760 * 300.00206 * 6 4 3 8 8 C 1.47196 * 109.47098 * 59.99663 * 6 4 3 9 9 N 4.97817 * 108.59033 * 26.82843 * 2 1 3 10 10 N 1.46493 * 109.47324 * 180.02562 * 6 4 3 11 11 C 1.38800 * 120.00276 * 155.00043 * 10 6 4 12 12 C 1.38637 * 120.21542 * 359.97438 * 11 10 6 13 13 C 1.38226 * 120.21826 * 180.02562 * 12 11 10 14 14 C 1.38792 * 120.66349 * 359.97438 * 13 12 11 15 15 C 1.37740 * 120.42774 * 359.97438 * 14 13 12 16 16 F 1.35100 * 120.11694 * 180.02562 * 15 14 13 17 17 C 1.40996 * 119.76584 * 0.30309 * 15 14 13 18 18 C 1.40999 * 120.32298 * 179.69966 * 17 15 14 19 19 H 1.07999 * 120.00188 * 143.53858 * 18 17 15 20 20 C 1.39909 * 119.99588 * 323.54095 * 18 17 15 21 21 N 1.30907 * 120.00425 * 339.76529 * 20 18 17 22 22 Si 1.86803 * 119.99983 * 159.78021 * 20 18 17 23 23 H 1.48497 * 109.47748 * 89.99375 * 22 20 18 24 24 H 1.48504 * 109.47030 * 209.99850 * 22 20 18 25 25 H 1.48501 * 109.46625 * 329.98987 * 22 20 18 26 26 H 1.08994 * 109.46816 * 59.99920 * 1 2 3 27 27 H 1.08996 * 109.46806 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47002 * 299.99717 * 1 2 3 29 29 H 1.09001 * 109.47002 * 240.00283 * 2 1 3 30 30 H 1.09006 * 109.47239 * 120.00113 * 2 1 3 31 31 H 0.96997 * 120.00063 * 334.99280 * 10 6 4 32 32 H 1.07998 * 119.89140 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.67000 * 179.97438 * 13 12 11 34 34 H 1.07996 * 119.78779 * 180.02562 * 14 13 12 35 35 H 0.97000 * 120.00222 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 1 3.5852 3.4698 -0.8888 8 6 3.4667 3.6557 1.2030 9 7 3.1171 4.2105 2.1295 10 7 5.3838 2.8607 0.0010 11 6 6.1339 3.9124 -0.5065 12 6 5.5033 5.0376 -1.0149 13 6 6.2502 6.0848 -1.5209 14 6 7.6369 6.0269 -1.5273 15 6 8.2913 4.9226 -1.0279 16 9 9.6414 4.8731 -1.0368 17 6 7.5471 3.8414 -0.5128 18 6 8.2048 2.7025 -0.0045 19 1 7.8035 2.1857 0.8548 20 6 9.3773 2.2419 -0.6133 21 7 9.6547 2.5877 -1.8450 22 14 10.5468 1.1331 0.3314 23 1 10.1700 -0.2862 0.1110 24 1 11.9350 1.3567 -0.1461 25 1 10.4651 1.4478 1.7804 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 5.8283 2.0749 0.3558 32 1 4.4249 5.0956 -1.0165 33 1 5.7498 6.9568 -1.9151 34 1 8.2066 6.8534 -1.9256 35 1 10.4674 2.2680 -2.2672 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170370602.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:21 Heat of formation + Delta-G solvation = -83.525138 kcal Electronic energy + Delta-G solvation = -22733.149136 eV Core-core repulsion = 19031.651944 eV Total energy + Delta-G solvation = -3701.497193 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.87655 -41.92573 -39.84632 -38.10439 -37.73562 -35.80962 -35.40572 -32.82526 -31.88017 -30.61554 -28.51064 -26.85505 -24.50901 -23.12986 -22.56113 -22.25351 -19.98418 -19.36913 -18.99408 -18.25093 -17.81983 -17.52259 -16.88861 -16.48403 -15.94581 -15.82340 -15.62160 -15.39023 -15.13077 -14.70808 -14.48790 -14.37647 -13.94925 -13.63409 -13.59447 -13.52043 -13.20824 -13.09897 -12.97984 -12.90021 -12.63019 -12.50945 -12.27485 -11.93371 -11.76445 -11.55896 -11.39516 -10.97807 -10.84325 -9.07226 -8.63576 -8.34029 -6.20022 0.70946 0.93778 0.95390 1.09147 1.36747 1.38591 1.45826 1.51186 1.74233 2.24899 2.62823 2.76924 2.85750 3.45254 3.59513 3.84754 4.04277 4.07770 4.27298 4.37667 4.42967 4.62831 4.70358 4.79111 4.96211 5.08763 5.11040 5.31045 5.35621 5.45741 5.53795 5.77277 6.00358 6.18678 6.23182 6.37830 6.43786 6.62215 6.78772 6.97578 7.06471 8.43462 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015839 B = 0.005103 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.411948 B = 5486.017262 C = 6651.337092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.479 3.521 5 O -0.503 6.503 6 C 0.274 3.726 7 H 0.187 0.813 8 C 0.213 3.787 9 N -0.430 5.430 10 N -0.717 5.717 11 C 0.134 3.866 12 C -0.182 4.182 13 C -0.148 4.148 14 C -0.184 4.184 15 C 0.026 3.974 16 F -0.159 7.159 17 C 0.017 3.983 18 C -0.502 4.502 19 H 0.076 0.924 20 C 0.043 3.957 21 N -0.820 5.820 22 Si 0.963 3.037 23 H -0.262 1.262 24 H -0.275 1.275 25 H -0.264 1.264 26 H 0.074 0.926 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.410 0.590 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.040 -3.532 -0.306 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.319 3.681 5 O -0.389 6.389 6 C 0.162 3.838 7 H 0.203 0.797 8 C -0.108 4.108 9 N -0.107 5.107 10 N -0.354 5.354 11 C 0.035 3.965 12 C -0.205 4.205 13 C -0.167 4.167 14 C -0.204 4.204 15 C 0.004 3.996 16 F -0.138 7.138 17 C 0.012 3.988 18 C -0.533 4.533 19 H 0.094 0.906 20 C -0.172 4.172 21 N -0.446 5.446 22 Si 0.786 3.214 23 H -0.187 1.187 24 H -0.200 1.200 25 H -0.188 1.188 26 H 0.093 0.907 27 H 0.121 0.879 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.249 0.751 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.310 -3.031 0.851 15.631 hybrid contribution 1.736 -1.149 0.042 2.082 sum -13.574 -4.180 0.893 14.231 Atomic orbital electron populations 1.21844 0.90051 1.04555 1.03892 1.23476 0.97262 0.78250 1.03256 1.86496 1.21867 1.34750 1.83173 1.22815 0.81829 0.90726 0.72772 1.90747 1.61029 1.42451 1.44677 1.17361 0.83342 0.89505 0.93634 0.79651 1.29502 0.92799 0.93913 0.94582 1.81105 1.08886 1.09561 1.11146 1.43705 1.00309 1.21125 1.70224 1.17641 0.89357 0.89226 1.00280 1.20564 0.99541 0.93845 1.06544 1.20460 0.91623 0.99806 1.04844 1.20789 0.96180 0.97556 1.05916 1.17953 0.76228 0.95907 1.09518 1.91265 1.30927 1.96743 1.94877 1.17349 0.90389 0.93469 0.97583 1.19114 1.09032 1.11385 1.13727 0.90568 1.26371 0.98886 0.97363 0.94629 1.69840 1.24250 1.38507 1.11988 0.85479 0.77691 0.78700 0.79577 1.18706 1.19971 1.18785 0.90708 0.87940 0.91544 0.90285 0.91125 0.75130 0.84405 0.84133 0.86759 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 71.98 0.74 -0.82 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.48 10.13 -51.39 -0.52 -8.00 16 4 C 0.48 12.67 7.29 71.24 0.52 13.19 16 5 O -0.50 -16.32 15.59 21.97 0.34 -15.98 16 6 C 0.27 7.36 2.65 42.44 0.11 7.47 16 7 H 0.19 3.70 6.47 -2.38 -0.02 3.68 16 8 C 0.21 6.23 14.66 89.45 1.31 7.54 16 9 N -0.43 -14.11 18.53 19.99 0.37 -13.74 16 10 N -0.72 -26.01 4.99 -329.94 -1.65 -27.66 16 11 C 0.13 5.65 6.64 38.94 0.26 5.91 16 12 C -0.18 -6.57 9.11 22.36 0.20 -6.37 16 13 C -0.15 -5.46 10.03 22.40 0.22 -5.24 16 14 C -0.18 -8.06 9.99 22.28 0.22 -7.83 16 15 C 0.03 1.32 6.68 22.83 0.15 1.48 16 16 F -0.16 -8.87 14.27 44.97 0.64 -8.23 16 17 C 0.02 0.88 5.41 -21.12 -0.11 0.77 16 18 C -0.50 -26.47 8.14 23.35 0.19 -26.28 16 19 H 0.08 3.87 7.13 -2.91 -0.02 3.85 16 20 C 0.04 2.24 4.50 85.24 0.38 2.62 16 21 N -0.82 -44.75 11.13 21.83 0.24 -44.51 16 22 Si 0.96 40.68 29.61 68.60 2.03 42.72 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.07 1.22 8.13 -2.38 -0.02 1.20 16 31 H 0.41 16.24 6.22 -92.71 -0.58 15.67 16 32 H 0.14 3.76 6.14 -2.91 -0.02 3.74 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 34 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -65.56 318.21 6.69 -58.87 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 0.58 Total: 22.78 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 4.65 Total: -6.26 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -1.03 Total: -85.90 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.18 Total: -23.98 kcal Atomic # 9 Polarization: -8.87 SS G_CDS: 0.64 Total: -8.23 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.72 kcal Total: -65.56 6.69 -58.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370602.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.658 kcal (2) G-P(sol) polarization free energy of solvation -65.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds