Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45210 * 109.47345 * 2 1 4 4 C 1.34224 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00149 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99783 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47116 * 60.00554 * 6 4 3 8 8 C 1.47196 * 109.47401 * 300.00066 * 6 4 3 9 9 N 4.97823 * 108.58964 * 333.17204 * 2 1 3 10 10 N 1.46507 * 109.47062 * 180.02562 * 6 4 3 11 11 C 1.38806 * 119.99933 * 205.00429 * 10 6 4 12 12 C 1.38624 * 120.21788 * 0.25295 * 11 10 6 13 13 C 1.38231 * 120.21770 * 180.28122 * 12 11 10 14 14 C 1.38782 * 120.66085 * 359.74234 * 13 12 11 15 15 C 1.37742 * 120.43177 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.11876 * 179.97438 * 15 14 13 17 17 C 1.40998 * 119.76327 * 0.02562 * 15 14 13 18 18 C 1.40991 * 120.32249 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99738 * 216.52267 * 18 17 15 20 20 C 1.39916 * 120.00188 * 36.23699 * 18 17 15 21 21 N 1.30908 * 119.99687 * 20.50892 * 20 18 17 22 22 Si 1.86799 * 120.00172 * 200.50782 * 20 18 17 23 23 H 1.48502 * 109.47044 * 90.00419 * 22 20 18 24 24 H 1.48503 * 109.46855 * 210.00107 * 22 20 18 25 25 H 1.48495 * 109.46898 * 330.00216 * 22 20 18 26 26 H 1.08990 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46706 * 300.00499 * 1 2 3 28 28 H 1.09005 * 109.46845 * 59.99917 * 1 2 3 29 29 H 1.08995 * 109.47452 * 240.00055 * 2 1 3 30 30 H 1.09003 * 109.47615 * 119.99572 * 2 1 3 31 31 H 0.97002 * 120.00044 * 25.00006 * 10 6 4 32 32 H 1.07998 * 119.89276 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.66770 * 179.71919 * 13 12 11 34 34 H 1.07998 * 119.78688 * 180.02562 * 14 13 12 35 35 H 0.97000 * 120.00218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4700 0.8895 8 6 3.4677 3.6554 -1.2025 9 7 3.1170 4.2106 -2.1295 10 7 5.3838 2.8607 0.0001 11 6 6.1339 3.9125 0.5078 12 6 5.5032 5.0354 1.0207 13 6 6.2502 6.0854 1.5210 14 6 7.6369 6.0297 1.5226 15 6 8.2914 4.9246 1.0249 16 9 9.6415 4.8773 1.0291 17 6 7.5472 3.8433 0.5102 18 6 8.2050 2.7065 -0.0026 19 1 7.8021 2.1914 -0.8622 20 6 9.3828 2.2492 0.5984 21 7 9.6645 2.5912 1.8302 22 14 10.5533 1.1507 -0.3569 23 1 11.5422 1.9908 -1.0792 24 1 11.2641 0.2481 0.5841 25 1 9.7842 0.3400 -1.3348 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8283 2.0749 -0.3545 32 1 4.4247 5.0919 1.0256 33 1 5.7498 6.9579 1.9142 34 1 8.2067 6.8580 1.9173 35 1 10.4812 2.2745 2.2468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170370603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = -67.103491 kcal Electronic energy + Delta-G solvation = -22732.150459 eV Core-core repulsion = 19031.365362 eV Total energy + Delta-G solvation = -3700.785097 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -46.93923 -40.79473 -38.32203 -36.87902 -36.42848 -34.32778 -33.60474 -32.03517 -30.30176 -29.03891 -26.98782 -25.08649 -23.64702 -21.86127 -21.09197 -20.62382 -18.74783 -17.88641 -17.36800 -17.08130 -16.45732 -16.21224 -15.26725 -15.02942 -14.28970 -14.25771 -14.07361 -13.94165 -13.72195 -13.42365 -13.09519 -12.98614 -12.78649 -12.61991 -12.29446 -12.11268 -11.81312 -11.77623 -11.51697 -11.34090 -11.23432 -10.90696 -10.73874 -10.68831 -10.55811 -10.23427 -9.60707 -9.37004 -9.03175 -7.26719 -6.84541 -6.65552 -4.33058 1.86087 2.14418 2.61377 2.67972 2.78203 2.95041 3.12532 3.16206 3.18189 3.89685 4.00206 4.17362 4.50398 4.62342 4.70758 4.74790 4.99716 5.04732 5.36211 5.41266 5.53561 5.71293 5.94029 5.98726 6.17811 6.28198 6.31544 6.81142 7.07394 7.17727 7.20197 7.45595 7.50108 7.56410 7.71420 7.96229 8.09398 8.39007 8.43974 8.78466 8.85791 10.24432 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.005097 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.067777 B = 5492.176753 C = 6653.325585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.353 6.353 4 C 0.469 3.531 5 O -0.474 6.474 6 C 0.272 3.728 7 H 0.152 0.848 8 C 0.196 3.804 9 N -0.405 5.405 10 N -0.713 5.713 11 C 0.125 3.875 12 C -0.180 4.180 13 C -0.168 4.168 14 C -0.167 4.167 15 C 0.061 3.939 16 F -0.141 7.141 17 C 0.056 3.944 18 C -0.475 4.475 19 H 0.080 0.920 20 C 0.083 3.917 21 N -0.779 5.779 22 Si 0.905 3.095 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.264 1.264 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.417 0.583 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 -3.784 0.112 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.269 6.269 4 C 0.308 3.692 5 O -0.358 6.358 6 C 0.159 3.841 7 H 0.169 0.831 8 C -0.125 4.125 9 N -0.082 5.082 10 N -0.352 5.352 11 C 0.028 3.972 12 C -0.203 4.203 13 C -0.188 4.188 14 C -0.187 4.187 15 C 0.039 3.961 16 F -0.119 7.119 17 C 0.051 3.949 18 C -0.504 4.504 19 H 0.098 0.902 20 C -0.137 4.137 21 N -0.403 5.403 22 Si 0.730 3.270 23 H -0.194 1.194 24 H -0.205 1.205 25 H -0.188 1.188 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.257 0.743 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.716 -3.290 -1.035 13.175 hybrid contribution 1.194 -1.132 0.002 1.646 sum -11.522 -4.423 -1.033 12.384 Atomic orbital electron populations 1.21813 0.92447 1.03023 1.03690 1.23120 0.95445 0.79629 1.03073 1.86497 1.23528 1.33022 1.83901 1.23055 0.81219 0.91514 0.73448 1.90743 1.60187 1.41700 1.43143 1.17108 0.85628 0.88561 0.92848 0.83106 1.29561 0.93460 0.94578 0.94932 1.81112 1.08059 1.08506 1.10524 1.43683 0.98551 1.22125 1.70874 1.17455 0.90108 0.88136 1.01530 1.20103 0.97324 0.95031 1.07823 1.19910 0.92521 0.98740 1.07618 1.20502 0.94798 0.97883 1.05556 1.17425 0.76618 0.94318 1.07690 1.91330 1.29510 1.96535 1.94541 1.17005 0.88517 0.93335 0.96052 1.18981 1.07456 1.10697 1.13281 0.90243 1.25675 0.97713 0.96159 0.94142 1.69783 1.23269 1.36413 1.10877 0.86349 0.80561 0.79760 0.80335 1.19361 1.20455 1.18763 0.90130 0.91259 0.91448 0.90961 0.90651 0.74260 0.88625 0.88153 0.88167 0.90749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.57 6.19 37.16 0.23 0.80 16 3 O -0.35 -4.22 10.13 -39.24 -0.40 -4.62 16 4 C 0.47 6.64 7.29 36.00 0.26 6.91 16 5 O -0.47 -7.90 15.59 -18.75 -0.29 -8.19 16 6 C 0.27 4.01 2.65 -71.87 -0.19 3.82 16 7 H 0.15 1.83 6.46 -51.93 -0.34 1.50 16 8 C 0.20 3.11 14.67 -20.76 -0.30 2.81 16 9 N -0.41 -7.07 18.54 42.16 0.78 -6.29 16 10 N -0.71 -13.36 4.99 -55.64 -0.28 -13.64 16 11 C 0.13 2.71 6.64 -83.32 -0.55 2.16 16 12 C -0.18 -3.55 9.11 -39.44 -0.36 -3.91 16 13 C -0.17 -3.39 10.03 -39.38 -0.40 -3.78 16 14 C -0.17 -3.74 9.99 -39.56 -0.40 -4.14 16 15 C 0.06 1.56 6.68 -38.72 -0.26 1.30 16 16 F -0.14 -3.76 14.26 2.25 0.03 -3.73 16 17 C 0.06 1.41 5.42 -106.57 -0.58 0.84 16 18 C -0.47 -12.11 8.13 -37.91 -0.31 -12.42 16 19 H 0.08 1.94 7.13 -52.49 -0.37 1.57 16 20 C 0.08 2.10 4.49 -17.32 -0.08 2.02 16 21 N -0.78 -20.49 11.13 55.55 0.62 -19.87 16 22 Si 0.91 19.26 29.61 -169.99 -5.03 14.22 16 23 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 30 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.42 8.26 6.22 -40.82 -0.25 8.00 16 32 H 0.10 1.56 6.15 -52.49 -0.32 1.24 16 33 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 35 H 0.28 6.86 8.30 -40.82 -0.34 6.53 16 LS Contribution 318.22 15.07 4.80 4.80 Total: -1.00 -29.42 318.22 -5.70 -35.12 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.38 Total: 6.44 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.55 Total: -4.23 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 1.12 Total: -39.81 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.69 Total: -12.80 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.73 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.42 -5.70 -35.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.987 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds