Wall clock time and date at job start Tue Mar 31 2020 07:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45210 * 109.47345 * 2 1 4 4 C 1.34224 * 117.00010 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00149 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99783 * 179.97438 * 4 3 2 7 7 H 1.09000 * 109.47116 * 60.00554 * 6 4 3 8 8 C 1.47196 * 109.47401 * 300.00066 * 6 4 3 9 9 N 4.97823 * 108.58964 * 333.17204 * 2 1 3 10 10 N 1.46507 * 109.47062 * 180.02562 * 6 4 3 11 11 C 1.38806 * 119.99933 * 205.00429 * 10 6 4 12 12 C 1.38624 * 120.21788 * 0.25295 * 11 10 6 13 13 C 1.38231 * 120.21770 * 180.28122 * 12 11 10 14 14 C 1.38782 * 120.66085 * 359.74234 * 13 12 11 15 15 C 1.37742 * 120.43177 * 359.97438 * 14 13 12 16 16 F 1.35098 * 120.11876 * 179.97438 * 15 14 13 17 17 C 1.40998 * 119.76327 * 0.02562 * 15 14 13 18 18 C 1.40991 * 120.32249 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99738 * 216.52267 * 18 17 15 20 20 C 1.39916 * 120.00188 * 36.23699 * 18 17 15 21 21 N 1.30908 * 119.99687 * 20.50892 * 20 18 17 22 22 Si 1.86799 * 120.00172 * 200.50782 * 20 18 17 23 23 H 1.48502 * 109.47044 * 90.00419 * 22 20 18 24 24 H 1.48503 * 109.46855 * 210.00107 * 22 20 18 25 25 H 1.48495 * 109.46898 * 330.00216 * 22 20 18 26 26 H 1.08990 * 109.46770 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46706 * 300.00499 * 1 2 3 28 28 H 1.09005 * 109.46845 * 59.99917 * 1 2 3 29 29 H 1.08995 * 109.47452 * 240.00055 * 2 1 3 30 30 H 1.09003 * 109.47615 * 119.99572 * 2 1 3 31 31 H 0.97002 * 120.00044 * 25.00006 * 10 6 4 32 32 H 1.07998 * 119.89276 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.66770 * 179.71919 * 13 12 11 34 34 H 1.07998 * 119.78688 * 180.02562 * 14 13 12 35 35 H 0.97000 * 120.00218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 1 3.5845 3.4700 0.8895 8 6 3.4677 3.6554 -1.2025 9 7 3.1170 4.2106 -2.1295 10 7 5.3838 2.8607 0.0001 11 6 6.1339 3.9125 0.5078 12 6 5.5032 5.0354 1.0207 13 6 6.2502 6.0854 1.5210 14 6 7.6369 6.0297 1.5226 15 6 8.2914 4.9246 1.0249 16 9 9.6415 4.8773 1.0291 17 6 7.5472 3.8433 0.5102 18 6 8.2050 2.7065 -0.0026 19 1 7.8021 2.1914 -0.8622 20 6 9.3828 2.2492 0.5984 21 7 9.6645 2.5912 1.8302 22 14 10.5533 1.1507 -0.3569 23 1 11.5422 1.9908 -1.0792 24 1 11.2641 0.2481 0.5841 25 1 9.7842 0.3400 -1.3348 26 1 -0.3632 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 5.8283 2.0749 -0.3545 32 1 4.4247 5.0919 1.0256 33 1 5.7498 6.9579 1.9142 34 1 8.2067 6.8580 1.9173 35 1 10.4812 2.2745 2.2468 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170370603.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:24 Heat of formation + Delta-G solvation = -83.625100 kcal Electronic energy + Delta-G solvation = -22732.866890 eV Core-core repulsion = 19031.365362 eV Total energy + Delta-G solvation = -3701.501528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.87956 -41.92519 -39.84592 -38.09947 -37.72498 -35.80477 -35.40665 -32.82564 -31.88129 -30.61670 -28.51058 -26.85579 -24.50872 -23.13043 -22.56184 -22.25378 -19.98434 -19.37051 -18.99427 -18.25084 -17.81962 -17.52298 -16.89157 -16.48348 -15.94602 -15.82242 -15.62333 -15.39033 -15.13084 -14.70398 -14.48702 -14.37710 -13.94321 -13.63172 -13.59249 -13.51696 -13.21332 -13.10603 -12.99046 -12.91989 -12.60959 -12.50912 -12.27051 -11.92395 -11.76331 -11.55906 -11.37675 -10.97841 -10.85841 -9.07832 -8.63739 -8.34093 -6.20193 0.70819 0.93725 0.95024 1.09054 1.36421 1.38513 1.47831 1.49323 1.73787 2.24839 2.62737 2.76770 2.85478 3.45202 3.59369 3.84675 4.04304 4.07801 4.27139 4.37711 4.42952 4.62740 4.70392 4.79141 4.96229 5.08782 5.10997 5.31086 5.35644 5.45678 5.53706 5.77176 6.00290 6.18665 6.23149 6.37790 6.43767 6.62232 6.78656 6.97438 7.06398 8.43360 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.005097 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.067777 B = 5492.176753 C = 6653.325585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.051 3.949 3 O -0.347 6.347 4 C 0.479 3.521 5 O -0.503 6.503 6 C 0.274 3.726 7 H 0.187 0.813 8 C 0.213 3.787 9 N -0.430 5.430 10 N -0.717 5.717 11 C 0.134 3.866 12 C -0.182 4.182 13 C -0.148 4.148 14 C -0.184 4.184 15 C 0.025 3.975 16 F -0.159 7.159 17 C 0.017 3.983 18 C -0.502 4.502 19 H 0.076 0.924 20 C 0.043 3.957 21 N -0.820 5.820 22 Si 0.964 3.036 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.258 1.258 26 H 0.102 0.898 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.410 0.590 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.080 -3.529 0.323 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.263 6.263 4 C 0.319 3.681 5 O -0.389 6.389 6 C 0.162 3.838 7 H 0.204 0.796 8 C -0.108 4.108 9 N -0.107 5.107 10 N -0.354 5.354 11 C 0.035 3.965 12 C -0.205 4.205 13 C -0.167 4.167 14 C -0.204 4.204 15 C 0.004 3.996 16 F -0.138 7.138 17 C 0.012 3.988 18 C -0.532 4.532 19 H 0.094 0.906 20 C -0.173 4.173 21 N -0.446 5.446 22 Si 0.786 3.214 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.181 1.181 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.249 0.751 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.357 -3.035 -0.835 15.676 hybrid contribution 1.753 -1.126 -0.059 2.085 sum -13.604 -4.162 -0.893 14.254 Atomic orbital electron populations 1.21843 0.90049 1.04555 1.03894 1.23476 0.97263 0.78245 1.03257 1.86498 1.21866 1.34756 1.83171 1.22813 0.81830 0.90728 0.72774 1.90748 1.61031 1.42452 1.44676 1.17366 0.83346 0.89507 0.93607 0.79624 1.29543 0.92780 0.93903 0.94585 1.81144 1.08886 1.09557 1.11126 1.43715 1.00309 1.21130 1.70219 1.17634 0.89360 0.89257 1.00228 1.20562 0.99550 0.93856 1.06519 1.20461 0.91615 0.99760 1.04890 1.20787 0.96184 0.97507 1.05968 1.17948 0.76218 0.95911 1.09550 1.91265 1.30933 1.96749 1.94876 1.17352 0.90402 0.93481 0.97574 1.19129 1.08708 1.11598 1.13793 0.90563 1.26374 0.98923 0.97305 0.94664 1.69843 1.23941 1.38614 1.12157 0.85463 0.78550 0.78188 0.79163 1.19843 1.19630 1.18132 0.87938 0.90703 0.91548 0.91134 0.90275 0.75130 0.84383 0.84126 0.86762 0.90751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 71.98 0.74 -0.81 16 2 C 0.05 0.85 6.19 71.98 0.45 1.30 16 3 O -0.35 -7.47 10.13 -51.36 -0.52 -7.99 16 4 C 0.48 12.67 7.29 71.23 0.52 13.19 16 5 O -0.50 -16.33 15.59 21.97 0.34 -15.99 16 6 C 0.27 7.36 2.65 42.44 0.11 7.47 16 7 H 0.19 3.69 6.46 -2.39 -0.02 3.68 16 8 C 0.21 6.22 14.67 89.44 1.31 7.54 16 9 N -0.43 -14.11 18.54 20.01 0.37 -13.74 16 10 N -0.72 -26.01 4.99 -329.94 -1.65 -27.66 16 11 C 0.13 5.65 6.64 38.93 0.26 5.91 16 12 C -0.18 -6.56 9.11 22.36 0.20 -6.36 16 13 C -0.15 -5.45 10.03 22.40 0.22 -5.23 16 14 C -0.18 -8.06 9.99 22.28 0.22 -7.83 16 15 C 0.03 1.31 6.68 22.83 0.15 1.46 16 16 F -0.16 -8.89 14.26 44.97 0.64 -8.25 16 17 C 0.02 0.87 5.42 -21.12 -0.11 0.76 16 18 C -0.50 -26.44 8.13 23.35 0.19 -26.25 16 19 H 0.08 3.88 7.13 -2.91 -0.02 3.86 16 20 C 0.04 2.23 4.49 85.24 0.38 2.62 16 21 N -0.82 -44.75 11.13 21.83 0.24 -44.50 16 22 Si 0.96 40.74 29.61 68.60 2.03 42.77 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.07 1.22 8.13 -2.39 -0.02 1.20 16 30 H 0.08 1.29 8.13 -2.39 -0.02 1.27 16 31 H 0.41 16.27 6.22 -92.71 -0.58 15.69 16 32 H 0.14 3.75 6.15 -2.91 -0.02 3.73 16 33 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 34 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.28 14.34 8.30 -92.71 -0.77 13.57 16 Total: -1.00 -65.56 318.22 6.69 -58.87 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.58 Total: 22.74 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 4.65 Total: -6.24 kcal Atomic # 7 Polarization: -84.88 SS G_CDS: -1.03 Total: -85.91 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.18 Total: -23.99 kcal Atomic # 9 Polarization: -8.89 SS G_CDS: 0.64 Total: -8.25 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.77 kcal Total: -65.56 6.69 -58.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170370603.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.756 kcal (2) G-P(sol) polarization free energy of solvation -65.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds