Wall clock time and date at job start Tue Mar 31 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47165 * 2 1 4 4 C 1.34231 * 117.00237 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00070 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47236 * 300.00631 * 6 4 3 8 8 C 1.47204 * 109.46939 * 60.00785 * 6 4 3 9 9 N 4.97817 * 108.58819 * 26.82718 * 2 1 3 10 10 N 1.46498 * 109.47188 * 180.02562 * 6 4 3 11 11 C 1.39882 * 119.99985 * 155.00001 * 10 6 4 12 12 C 1.39099 * 119.96050 * 0.28102 * 11 10 6 13 13 C 1.38626 * 120.46352 * 180.23371 * 12 11 10 14 14 C 1.37574 * 120.38611 * 359.48670 * 13 12 11 15 15 C 1.40787 * 119.91263 * 0.25166 * 14 13 12 16 16 C 1.41319 * 120.23122 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99898 * 154.70172 * 16 15 14 18 18 C 1.39921 * 120.00010 * 334.70430 * 16 15 14 19 19 N 1.30849 * 119.99945 * 342.88027 * 18 16 15 20 20 Si 1.86798 * 119.99984 * 162.88410 * 18 16 15 21 21 H 1.48504 * 109.47446 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47613 * 120.00049 * 20 18 16 23 23 H 1.48504 * 109.46960 * 240.00157 * 20 18 16 24 24 C 1.38590 * 119.96160 * 180.02562 * 11 10 6 25 25 F 1.35101 * 120.18916 * 359.97438 * 24 11 10 26 26 H 1.08998 * 109.46961 * 299.99666 * 1 2 3 27 27 H 1.08996 * 109.47215 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47276 * 239.99890 * 2 1 3 30 30 H 1.09004 * 109.47381 * 119.99905 * 2 1 3 31 31 H 0.96997 * 119.99748 * 335.00629 * 10 6 4 32 32 H 1.08000 * 119.76740 * 359.97438 * 12 11 10 33 33 H 1.07998 * 119.80361 * 179.76529 * 13 12 11 34 34 H 1.07998 * 120.04354 * 180.23693 * 14 13 12 35 35 H 0.97002 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5851 3.4691 -0.8904 8 6 3.4666 3.6567 1.2014 9 7 3.1169 4.2106 2.1295 10 7 5.3837 2.8608 0.0001 11 6 6.1396 3.9204 -0.5122 12 6 5.5015 5.0489 -1.0163 13 6 6.2402 6.1030 -1.5310 14 6 7.6149 6.0504 -1.5400 15 6 8.2775 4.9182 -1.0288 16 6 9.6894 4.8573 -1.0342 17 1 10.2058 4.2368 -0.3168 18 6 10.4181 5.6009 -1.9690 19 7 9.8233 6.0784 -3.0322 20 14 12.2402 5.9117 -1.6992 21 1 12.6694 5.2700 -0.4307 22 1 13.0130 5.3388 -2.8305 23 1 12.4867 7.3741 -1.6217 24 6 7.5235 3.8469 -0.5122 25 9 8.1458 2.7543 -0.0180 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8281 2.0752 0.3554 32 1 4.4228 5.1025 -1.0105 33 1 5.7336 6.9725 -1.9231 34 1 8.1850 6.8764 -1.9388 35 1 10.3284 6.5942 -3.6801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170374318.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:30 Heat of formation + Delta-G solvation = -76.213303 kcal Electronic energy + Delta-G solvation = -22294.261226 eV Core-core repulsion = 18593.081098 eV Total energy + Delta-G solvation = -3701.180128 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -47.20049 -40.92459 -38.20692 -37.01283 -36.56430 -35.00868 -33.35743 -32.10625 -29.85633 -29.66031 -26.60270 -25.44920 -23.71364 -21.93384 -20.96182 -20.89890 -18.98371 -17.99871 -17.35082 -17.21153 -16.57923 -16.07545 -15.36857 -15.13861 -15.04984 -14.29348 -14.14502 -14.02921 -13.78163 -13.27669 -13.16230 -13.06723 -12.87870 -12.73911 -12.35194 -12.20117 -11.89770 -11.89512 -11.65072 -11.36511 -11.14523 -11.06501 -10.84143 -10.73614 -10.56910 -10.00509 -9.68135 -9.62774 -9.13918 -7.51264 -6.92833 -6.62152 -4.50394 1.71983 2.00906 2.50810 2.61205 2.82804 2.85709 3.03582 3.09157 3.12016 3.78355 3.84993 3.94607 4.37460 4.49903 4.62720 4.66033 4.89672 4.96357 5.32714 5.46066 5.46405 5.64465 5.77739 6.00506 6.07318 6.43673 6.61419 6.81710 7.01351 7.06206 7.28763 7.38159 7.44985 7.55754 7.87141 7.94782 8.07866 8.15028 8.50176 8.68117 8.79648 10.03894 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.003512 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.454855 B = 7971.215600 C = 8288.242207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.351 6.351 4 C 0.471 3.529 5 O -0.479 6.479 6 C 0.275 3.725 7 H 0.157 0.843 8 C 0.196 3.804 9 N -0.399 5.399 10 N -0.731 5.731 11 C 0.193 3.807 12 C -0.285 4.285 13 C -0.076 4.076 14 C -0.174 4.174 15 C 0.116 3.884 16 C -0.448 4.448 17 H 0.084 0.916 18 C 0.077 3.923 19 N -0.783 5.783 20 Si 0.912 3.088 21 H -0.259 1.259 22 H -0.273 1.273 23 H -0.270 1.270 24 C -0.079 4.079 25 F -0.163 7.163 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.412 0.588 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.124 0.876 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -6.554 0.796 14.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.310 3.690 5 O -0.363 6.363 6 C 0.162 3.838 7 H 0.174 0.826 8 C -0.126 4.126 9 N -0.076 5.076 10 N -0.369 5.369 11 C 0.096 3.904 12 C -0.308 4.308 13 C -0.095 4.095 14 C -0.194 4.194 15 C 0.112 3.888 16 C -0.476 4.476 17 H 0.102 0.898 18 C -0.142 4.142 19 N -0.407 5.407 20 Si 0.736 3.264 21 H -0.182 1.182 22 H -0.198 1.198 23 H -0.195 1.195 24 C -0.103 4.103 25 F -0.142 7.142 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.250 0.750 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.902 -5.907 1.931 14.321 hybrid contribution 1.199 -0.667 -0.187 1.385 sum -11.703 -6.575 1.744 13.536 Atomic orbital electron populations 1.21820 0.92319 1.03108 1.03772 1.23144 0.95563 0.79457 1.03084 1.86502 1.23311 1.33176 1.83714 1.23020 0.81337 0.91375 0.73271 1.90725 1.60286 1.41764 1.43550 1.17099 0.84851 0.88619 0.93220 0.82573 1.29351 0.93743 0.94688 0.94831 1.81125 1.07755 1.08270 1.10420 1.43993 0.99544 1.22029 1.71341 1.17347 0.88516 0.87918 0.96627 1.19742 0.97133 0.96503 1.17389 1.20463 0.94335 0.96485 0.98242 1.21091 0.92593 0.98853 1.06879 1.17427 0.93403 0.88922 0.89044 1.19576 0.91023 1.23069 1.13977 0.89786 1.25933 1.01535 0.93222 0.93557 1.69835 1.38763 1.25378 1.06709 0.86182 0.81348 0.79046 0.79793 1.18201 1.19790 1.19516 1.17218 0.87176 0.87598 1.18308 1.91240 1.83202 1.52722 1.87035 0.91397 0.91196 0.90044 0.90608 0.90920 0.74976 0.88586 0.88509 0.85779 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.29 37.16 0.38 -0.55 16 2 C 0.06 0.53 6.19 37.16 0.23 0.76 16 3 O -0.35 -3.93 10.13 -39.26 -0.40 -4.33 16 4 C 0.47 6.22 7.29 36.00 0.26 6.48 16 5 O -0.48 -7.36 15.59 -18.75 -0.29 -7.65 16 6 C 0.28 3.86 2.65 -71.87 -0.19 3.67 16 7 H 0.16 1.83 6.49 -51.93 -0.34 1.50 16 8 C 0.20 3.01 14.66 -20.76 -0.30 2.70 16 9 N -0.40 -6.82 18.54 42.15 0.78 -6.04 16 10 N -0.73 -12.90 5.09 -56.02 -0.29 -13.18 16 11 C 0.19 4.09 6.62 -83.73 -0.55 3.54 16 12 C -0.28 -5.74 9.14 -39.12 -0.36 -6.10 16 13 C -0.08 -1.63 10.01 -39.68 -0.40 -2.03 16 14 C -0.17 -4.25 8.68 -38.86 -0.34 -4.59 16 15 C 0.12 3.02 5.57 -106.78 -0.59 2.42 16 16 C -0.45 -11.72 8.77 -37.78 -0.33 -12.05 16 17 H 0.08 2.19 7.74 -52.48 -0.41 1.79 16 18 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 19 N -0.78 -19.24 10.97 55.55 0.61 -18.63 16 20 Si 0.91 18.18 29.59 -169.99 -5.03 13.15 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 C -0.08 -1.94 7.31 -38.47 -0.28 -2.22 16 25 F -0.16 -4.00 16.08 2.25 0.04 -3.96 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.41 7.41 7.27 -40.82 -0.30 7.11 16 32 H 0.10 1.62 6.14 -52.49 -0.32 1.30 16 33 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 34 H 0.12 3.11 6.19 -52.49 -0.32 2.78 16 35 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 LS Contribution 320.52 15.07 4.83 4.83 Total: -1.00 -28.79 320.52 -5.67 -34.46 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.36 Total: 7.54 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.56 Total: -6.19 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 1.11 Total: -37.85 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.69 Total: -11.97 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.04 Total: -3.96 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.03 Total: 13.15 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.79 -5.67 -34.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170374318.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.753 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds