Wall clock time and date at job start Tue Mar 31 2020 07:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.47165 * 2 1 4 4 C 1.34231 * 117.00237 * 179.97438 * 3 2 1 5 5 O 1.20825 * 119.99585 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00070 * 179.97438 * 4 3 2 7 7 H 1.08999 * 109.47236 * 300.00631 * 6 4 3 8 8 C 1.47204 * 109.46939 * 60.00785 * 6 4 3 9 9 N 4.97817 * 108.58819 * 26.82718 * 2 1 3 10 10 N 1.46498 * 109.47188 * 180.02562 * 6 4 3 11 11 C 1.39882 * 119.99985 * 155.00001 * 10 6 4 12 12 C 1.39099 * 119.96050 * 0.28102 * 11 10 6 13 13 C 1.38626 * 120.46352 * 180.23371 * 12 11 10 14 14 C 1.37574 * 120.38611 * 359.48670 * 13 12 11 15 15 C 1.40787 * 119.91263 * 0.25166 * 14 13 12 16 16 C 1.41319 * 120.23122 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99898 * 154.70172 * 16 15 14 18 18 C 1.39921 * 120.00010 * 334.70430 * 16 15 14 19 19 N 1.30849 * 119.99945 * 342.88027 * 18 16 15 20 20 Si 1.86798 * 119.99984 * 162.88410 * 18 16 15 21 21 H 1.48504 * 109.47446 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47613 * 120.00049 * 20 18 16 23 23 H 1.48504 * 109.46960 * 240.00157 * 20 18 16 24 24 C 1.38590 * 119.96160 * 180.02562 * 11 10 6 25 25 F 1.35101 * 120.18916 * 359.97438 * 24 11 10 26 26 H 1.08998 * 109.46961 * 299.99666 * 1 2 3 27 27 H 1.08996 * 109.47215 * 60.00264 * 1 2 3 28 28 H 1.09003 * 109.46756 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47276 * 239.99890 * 2 1 3 30 30 H 1.09004 * 109.47381 * 119.99905 * 2 1 3 31 31 H 0.96997 * 119.99748 * 335.00629 * 10 6 4 32 32 H 1.08000 * 119.76740 * 359.97438 * 12 11 10 33 33 H 1.07998 * 119.80361 * 179.76529 * 13 12 11 34 34 H 1.07998 * 120.04354 * 180.23693 * 14 13 12 35 35 H 0.97002 * 120.00452 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 1 3.5851 3.4691 -0.8904 8 6 3.4666 3.6567 1.2014 9 7 3.1169 4.2106 2.1295 10 7 5.3837 2.8608 0.0001 11 6 6.1396 3.9204 -0.5122 12 6 5.5015 5.0489 -1.0163 13 6 6.2402 6.1030 -1.5310 14 6 7.6149 6.0504 -1.5400 15 6 8.2775 4.9182 -1.0288 16 6 9.6894 4.8573 -1.0342 17 1 10.2058 4.2368 -0.3168 18 6 10.4181 5.6009 -1.9690 19 7 9.8233 6.0784 -3.0322 20 14 12.2402 5.9117 -1.6992 21 1 12.6694 5.2700 -0.4307 22 1 13.0130 5.3388 -2.8305 23 1 12.4867 7.3741 -1.6217 24 6 7.5235 3.8469 -0.5122 25 9 8.1458 2.7543 -0.0180 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8281 2.0752 0.3554 32 1 4.4228 5.1025 -1.0105 33 1 5.7336 6.9725 -1.9231 34 1 8.1850 6.8764 -1.9388 35 1 10.3284 6.5942 -3.6801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170374318.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:30 Heat of formation + Delta-G solvation = -92.173720 kcal Electronic energy + Delta-G solvation = -22294.953322 eV Core-core repulsion = 18593.081098 eV Total energy + Delta-G solvation = -3701.872224 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -49.09024 -41.97877 -39.71316 -38.27993 -37.79747 -36.54491 -35.03617 -32.82646 -31.48935 -31.21201 -28.11262 -27.26443 -24.52872 -23.05076 -22.64851 -22.46186 -20.21277 -19.38110 -18.90085 -18.34358 -17.84241 -17.58773 -16.94513 -16.67873 -16.48739 -15.97562 -15.63793 -15.19571 -14.97238 -14.87867 -14.50056 -14.40213 -14.00124 -13.72614 -13.67746 -13.60456 -13.30489 -13.11990 -12.99532 -12.77776 -12.72680 -12.52669 -12.19714 -11.83571 -11.78962 -11.58693 -11.44846 -11.31599 -10.85505 -9.33308 -8.71058 -8.30530 -6.41361 0.63887 0.86308 0.93108 1.04721 1.28335 1.39327 1.50338 1.54126 1.67600 2.20804 2.53873 2.60460 2.72260 3.39287 3.61917 3.78255 4.02404 4.04922 4.05996 4.35651 4.40686 4.75452 4.78019 4.93786 4.94768 5.03303 5.05995 5.25623 5.31348 5.33815 5.61337 5.79450 6.07122 6.12255 6.16911 6.32846 6.36092 6.54744 6.66348 6.82222 6.97176 8.27419 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030479 B = 0.003512 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.454855 B = 7971.215600 C = 8288.242207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.482 3.518 5 O -0.503 6.503 6 C 0.276 3.724 7 H 0.190 0.810 8 C 0.212 3.788 9 N -0.426 5.426 10 N -0.729 5.729 11 C 0.204 3.796 12 C -0.274 4.274 13 C -0.069 4.069 14 C -0.200 4.200 15 C 0.088 3.912 16 C -0.492 4.492 17 H 0.067 0.933 18 C 0.042 3.958 19 N -0.808 5.808 20 Si 0.981 3.019 21 H -0.266 1.266 22 H -0.263 1.263 23 H -0.257 1.257 24 C -0.116 4.116 25 F -0.172 7.172 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.484 -6.465 0.321 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.322 3.678 5 O -0.390 6.390 6 C 0.164 3.836 7 H 0.206 0.794 8 C -0.109 4.109 9 N -0.103 5.103 10 N -0.366 5.366 11 C 0.105 3.895 12 C -0.296 4.296 13 C -0.088 4.088 14 C -0.220 4.220 15 C 0.084 3.916 16 C -0.520 4.520 17 H 0.085 0.915 18 C -0.175 4.175 19 N -0.433 5.433 20 Si 0.802 3.198 21 H -0.190 1.190 22 H -0.187 1.187 23 H -0.181 1.181 24 C -0.140 4.140 25 F -0.151 7.151 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.247 0.753 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.128 0.872 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.923 -5.830 1.462 16.088 hybrid contribution 1.581 -0.784 -0.013 1.765 sum -13.342 -6.614 1.449 14.962 Atomic orbital electron populations 1.21853 0.90129 1.04600 1.03876 1.23498 0.97227 0.78071 1.03394 1.86503 1.21739 1.34935 1.83024 1.22696 0.81937 0.90472 0.72742 1.90732 1.61024 1.42339 1.44879 1.17362 0.82636 0.89739 0.93825 0.79353 1.29400 0.93034 0.93987 0.94519 1.81159 1.08629 1.09372 1.11146 1.43980 1.01166 1.20914 1.70502 1.17386 0.87664 0.88990 0.95451 1.20197 0.99184 0.95104 1.15127 1.20844 0.93293 0.97839 0.96865 1.21062 0.94037 0.98351 1.08576 1.17774 0.93903 0.89986 0.89918 1.19689 0.91872 1.25160 1.15310 0.91512 1.26660 1.05656 0.92438 0.92755 1.69848 1.40547 1.25746 1.07176 0.85172 0.75898 0.79367 0.79394 1.18956 1.18733 1.18148 1.17564 0.88826 0.87601 1.19989 1.91197 1.83644 1.53025 1.87280 0.91592 0.90749 0.87861 0.90085 0.90969 0.75289 0.84344 0.85232 0.87150 0.89618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.35 -6.87 10.13 -51.43 -0.52 -7.40 16 4 C 0.48 11.66 7.29 71.23 0.52 12.18 16 5 O -0.50 -14.77 15.59 21.97 0.34 -14.42 16 6 C 0.28 6.97 2.65 42.44 0.11 7.08 16 7 H 0.19 3.57 6.49 -2.39 -0.02 3.55 16 8 C 0.21 5.98 14.66 89.44 1.31 7.29 16 9 N -0.43 -13.70 18.54 20.01 0.37 -13.33 16 10 N -0.73 -24.61 5.09 -331.16 -1.69 -26.30 16 11 C 0.20 8.42 6.62 38.15 0.25 8.67 16 12 C -0.27 -10.24 9.14 22.57 0.21 -10.04 16 13 C -0.07 -2.85 10.01 22.21 0.22 -2.63 16 14 C -0.20 -9.88 8.68 22.74 0.20 -9.68 16 15 C 0.09 4.72 5.57 -21.26 -0.12 4.60 16 16 C -0.49 -26.98 8.77 23.44 0.21 -26.78 16 17 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 18 C 0.04 2.08 5.15 85.25 0.44 2.52 16 19 N -0.81 -40.55 10.97 21.82 0.24 -40.31 16 20 Si 0.98 38.01 29.59 68.60 2.03 40.04 16 21 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 23 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 24 C -0.12 -5.82 7.31 22.99 0.17 -5.65 16 25 F -0.17 -8.79 16.08 44.97 0.72 -8.07 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 30 H 0.07 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.41 14.49 7.27 -92.71 -0.67 13.81 16 32 H 0.14 3.97 6.14 -2.91 -0.02 3.95 16 33 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.11 5.67 6.19 -2.91 -0.02 5.65 16 35 H 0.29 13.06 8.30 -92.71 -0.77 12.30 16 Total: -1.00 -64.30 320.52 6.68 -57.62 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 0.48 Total: 24.04 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 4.70 Total: -11.87 kcal Atomic # 7 Polarization: -78.87 SS G_CDS: -1.08 Total: -79.94 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.18 Total: -21.82 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.72 Total: -8.07 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -64.30 6.68 -57.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170374318.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.559 kcal (2) G-P(sol) polarization free energy of solvation -64.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds