Wall clock time and date at job start Tue Mar 31 2020 07:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45206 * 109.46814 * 2 1 4 4 C 1.34231 * 116.99953 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00210 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99817 * 180.02562 * 4 3 2 7 7 H 1.08998 * 109.47343 * 60.00157 * 6 4 3 8 8 C 1.47199 * 109.46883 * 300.00138 * 6 4 3 9 9 N 4.97826 * 108.58563 * 333.17512 * 2 1 3 10 10 N 1.46499 * 109.46913 * 180.02562 * 6 4 3 11 11 C 1.39887 * 119.99812 * 204.99880 * 10 6 4 12 12 C 1.39095 * 119.96311 * 0.25506 * 11 10 6 13 13 C 1.38623 * 120.46660 * 180.30253 * 12 11 10 14 14 C 1.37580 * 120.38714 * 359.72023 * 13 12 11 15 15 C 1.40792 * 119.90320 * 0.02562 * 14 13 12 16 16 C 1.41330 * 120.22512 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99897 * 204.60335 * 16 15 14 18 18 C 1.39924 * 119.99506 * 24.60151 * 16 15 14 19 19 N 1.30851 * 120.00486 * 17.78738 * 18 16 15 20 20 Si 1.86806 * 119.99610 * 197.78070 * 18 16 15 21 21 H 1.48501 * 109.46781 * 60.00309 * 20 18 16 22 22 H 1.48505 * 109.46950 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47021 * 300.00417 * 20 18 16 24 24 C 1.38590 * 119.95827 * 180.02562 * 11 10 6 25 25 F 1.35103 * 120.19338 * 359.97196 * 24 11 10 26 26 H 1.08997 * 109.47364 * 59.99553 * 1 2 3 27 27 H 1.09000 * 109.46530 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47102 * 299.99783 * 1 2 3 29 29 H 1.09001 * 109.47434 * 240.00899 * 2 1 3 30 30 H 1.08998 * 109.47539 * 119.99682 * 2 1 3 31 31 H 0.96997 * 120.00158 * 25.00042 * 10 6 4 32 32 H 1.07999 * 119.76350 * 0.02700 * 12 11 10 33 33 H 1.07993 * 119.80457 * 179.70174 * 13 12 11 34 34 H 1.07999 * 120.04713 * 180.02562 * 14 13 12 35 35 H 0.96996 * 120.00274 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 0.0005 5 8 4.0808 0.5869 0.0005 6 6 3.9206 2.9376 0.0012 7 1 3.5843 3.4695 0.8912 8 6 3.4672 3.6565 -1.2007 9 7 3.1167 4.2109 -2.1294 10 7 5.3836 2.8610 0.0010 11 6 6.1395 3.9207 0.5135 12 6 5.5011 5.0444 1.0277 13 6 6.2400 6.1032 1.5324 14 6 7.6149 6.0531 1.5361 15 6 8.2774 4.9211 1.0244 16 6 9.6895 4.8627 1.0243 17 1 10.2039 4.2333 0.3134 18 6 10.4210 5.6205 1.9455 19 7 9.8330 6.1007 3.0113 20 14 12.2371 5.9464 1.6539 21 1 12.4094 6.6759 0.3720 22 1 12.7778 6.7668 2.7674 23 1 12.9678 4.6552 1.5907 24 6 7.5234 3.8476 0.5125 25 9 8.1458 2.7550 0.0183 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.8281 2.0756 -0.3544 32 1 4.4223 5.0943 1.0298 33 1 5.7334 6.9725 1.9247 34 1 8.1851 6.8809 1.9311 35 1 10.3400 6.6263 3.6497 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170374319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:32 Heat of formation + Delta-G solvation = -92.179203 kcal Electronic energy + Delta-G solvation = -22293.756202 eV Core-core repulsion = 18591.883740 eV Total energy + Delta-G solvation = -3701.872461 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.08732 -41.97822 -39.70958 -38.27515 -37.78926 -36.54117 -35.03706 -32.82620 -31.49026 -31.20982 -28.11044 -27.26410 -24.52825 -23.04882 -22.64814 -22.46185 -20.21316 -19.38068 -18.89798 -18.34305 -17.84150 -17.58775 -16.93789 -16.68220 -16.48835 -15.97562 -15.64368 -15.19576 -14.96654 -14.87493 -14.48907 -14.40282 -13.99510 -13.73057 -13.67752 -13.60456 -13.30729 -13.10951 -12.99442 -12.79069 -12.71380 -12.52665 -12.19556 -11.83755 -11.78862 -11.58717 -11.46025 -11.30959 -10.84967 -9.33985 -8.71297 -8.30466 -6.41245 0.63811 0.87297 0.93167 1.04895 1.28195 1.38991 1.49368 1.54388 1.67140 2.20304 2.53883 2.60366 2.72226 3.39279 3.62204 3.78113 4.02437 4.04984 4.06297 4.35657 4.40885 4.75462 4.78278 4.94022 4.94763 5.03167 5.05977 5.25459 5.31468 5.33831 5.61583 5.79257 6.07065 6.12453 6.16931 6.32803 6.36062 6.54893 6.66247 6.81820 6.97359 8.26674 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.030592 B = 0.003509 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.053078 B = 7977.630943 C = 8292.492527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.051 3.949 3 O -0.346 6.346 4 C 0.482 3.518 5 O -0.503 6.503 6 C 0.277 3.723 7 H 0.190 0.810 8 C 0.212 3.788 9 N -0.426 5.426 10 N -0.729 5.729 11 C 0.204 3.796 12 C -0.274 4.274 13 C -0.069 4.069 14 C -0.201 4.201 15 C 0.088 3.912 16 C -0.493 4.493 17 H 0.068 0.932 18 C 0.043 3.957 19 N -0.807 5.807 20 Si 0.981 3.019 21 H -0.261 1.261 22 H -0.259 1.259 23 H -0.264 1.264 24 C -0.117 4.117 25 F -0.172 7.172 26 H 0.065 0.935 27 H 0.103 0.897 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.410 0.590 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.449 -6.475 -0.306 15.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.022 4.022 3 O -0.262 6.262 4 C 0.322 3.678 5 O -0.390 6.390 6 C 0.165 3.835 7 H 0.207 0.793 8 C -0.110 4.110 9 N -0.103 5.103 10 N -0.366 5.366 11 C 0.105 3.895 12 C -0.297 4.297 13 C -0.088 4.088 14 C -0.222 4.222 15 C 0.084 3.916 16 C -0.521 4.521 17 H 0.086 0.914 18 C -0.175 4.175 19 N -0.432 5.432 20 Si 0.801 3.199 21 H -0.185 1.185 22 H -0.183 1.183 23 H -0.189 1.189 24 C -0.141 4.141 25 F -0.152 7.152 26 H 0.084 0.916 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.247 0.753 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.889 -5.836 -1.441 16.057 hybrid contribution 1.581 -0.786 -0.014 1.765 sum -13.308 -6.621 -1.455 14.936 Atomic orbital electron populations 1.21852 0.90131 1.04599 1.03877 1.23499 0.97228 0.78068 1.03394 1.86504 1.21739 1.34936 1.83024 1.22697 0.81936 0.90470 0.72742 1.90732 1.61013 1.42348 1.44877 1.17366 0.82644 0.89741 0.93794 0.79342 1.29442 0.93014 0.93976 0.94521 1.81198 1.08635 1.09370 1.11131 1.43981 1.01163 1.20924 1.70497 1.17386 0.87665 0.89014 0.95392 1.20190 0.99169 0.95206 1.15136 1.20843 0.93293 0.97787 0.96907 1.21073 0.94039 0.98384 1.08665 1.17767 0.93876 0.89984 0.89942 1.19660 0.91880 1.24525 1.16071 0.91425 1.26663 1.05607 0.92500 0.92694 1.69839 1.40693 1.25344 1.07296 0.85274 0.75853 0.79362 0.79404 1.18533 1.18321 1.18892 1.17555 0.88825 0.87593 1.20108 1.91196 1.83639 1.53016 1.87303 0.91593 0.87860 0.90750 0.90969 0.90081 0.75289 0.84337 0.85248 0.87110 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 10.29 71.98 0.74 -0.65 16 2 C 0.05 0.77 6.19 71.98 0.45 1.21 16 3 O -0.35 -6.88 10.13 -51.43 -0.52 -7.40 16 4 C 0.48 11.67 7.29 71.24 0.52 12.19 16 5 O -0.50 -14.77 15.59 21.98 0.34 -14.43 16 6 C 0.28 6.98 2.66 42.44 0.11 7.10 16 7 H 0.19 3.57 6.46 -2.39 -0.02 3.56 16 8 C 0.21 5.99 14.69 89.43 1.31 7.30 16 9 N -0.43 -13.74 18.54 20.02 0.37 -13.37 16 10 N -0.73 -24.63 5.09 -331.15 -1.69 -26.32 16 11 C 0.20 8.44 6.62 38.15 0.25 8.69 16 12 C -0.27 -10.29 9.15 22.57 0.21 -10.08 16 13 C -0.07 -2.85 10.01 22.21 0.22 -2.63 16 14 C -0.20 -9.96 8.69 22.74 0.20 -9.76 16 15 C 0.09 4.73 5.58 -21.26 -0.12 4.61 16 16 C -0.49 -27.03 8.78 23.44 0.21 -26.82 16 17 H 0.07 3.75 7.73 -2.91 -0.02 3.73 16 18 C 0.04 2.12 5.14 85.25 0.44 2.55 16 19 N -0.81 -40.49 10.96 21.82 0.24 -40.25 16 20 Si 0.98 37.93 29.60 68.60 2.03 39.96 16 21 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.20 7.11 99.48 0.71 -8.49 16 23 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 24 C -0.12 -5.88 7.31 22.99 0.17 -5.71 16 25 F -0.17 -8.79 16.08 44.97 0.72 -8.07 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 29 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 31 H 0.41 14.50 7.27 -92.71 -0.67 13.82 16 32 H 0.14 3.98 6.14 -2.91 -0.02 3.96 16 33 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.11 5.69 6.16 -2.91 -0.02 5.67 16 35 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 Total: -1.00 -64.20 320.52 6.69 -57.52 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.48 Total: 24.34 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: 4.70 Total: -12.00 kcal Atomic # 7 Polarization: -78.86 SS G_CDS: -1.08 Total: -79.93 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.18 Total: -21.83 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.72 Total: -8.07 kcal Atomic # 14 Polarization: 37.93 SS G_CDS: 2.03 Total: 39.96 kcal Total: -64.20 6.69 -57.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170374319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.663 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds