Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99644 * 2 1 4 4 H 1.48501 * 109.46919 * 270.00115 * 3 2 1 5 5 H 1.48490 * 109.47495 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.46744 * 150.00605 * 3 2 1 7 7 C 1.37874 * 120.00204 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84948 * 359.97438 * 7 2 1 9 9 C 1.53235 * 108.53578 * 231.33035 * 8 7 2 10 10 C 1.52959 * 109.40282 * 305.37054 * 9 8 7 11 11 H 1.08997 * 109.41749 * 303.56563 * 10 9 8 12 12 N 1.46504 * 109.40905 * 183.70513 * 10 9 8 13 13 C 1.34780 * 119.99741 * 155.00567 * 12 10 9 14 14 O 1.21725 * 119.99597 * 359.97438 * 13 12 10 15 15 C 1.46252 * 119.99928 * 180.02562 * 13 12 10 16 16 C 1.35241 * 119.99861 * 179.97438 * 15 13 12 17 17 C 1.46396 * 119.99754 * 179.97438 * 16 15 13 18 18 N 1.30832 * 125.55322 * 359.69230 * 17 16 15 19 19 C 1.30805 * 115.81295 * 180.26146 * 18 17 16 20 20 C 1.34168 * 115.80706 * 0.02562 * 19 18 17 21 21 S 1.71053 * 109.15652 * 0.02562 * 20 19 18 22 22 C 1.52959 * 109.81664 * 63.60531 * 10 9 8 23 23 C 1.51263 * 120.85082 * 179.97438 * 7 2 1 24 24 H 0.96995 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.62073 * 111.61523 * 8 7 2 26 26 H 1.08997 * 109.62322 * 351.04316 * 8 7 2 27 27 H 1.08998 * 109.47722 * 185.39358 * 9 8 7 28 28 H 1.09000 * 109.49335 * 65.35948 * 9 8 7 29 29 H 0.97001 * 120.00287 * 335.00283 * 12 10 9 30 30 H 1.08001 * 119.99986 * 359.97438 * 15 13 12 31 31 H 1.08001 * 120.00157 * 359.97438 * 16 15 13 32 32 H 1.08002 * 122.09360 * 179.97438 * 19 18 17 33 33 H 1.07998 * 125.42149 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.48435 * 56.37260 * 22 10 9 35 35 H 1.08996 * 109.48747 * 176.42014 * 22 10 9 36 36 H 1.09006 * 109.62726 * 248.38499 * 23 7 2 37 37 H 1.09001 * 109.62901 * 8.76019 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8237 -3.3830 1.1334 10 6 3.3406 -3.5073 0.9811 11 1 3.5741 -3.9110 -0.0040 12 7 3.8612 -4.4083 2.0124 13 6 5.0187 -5.0681 1.8089 14 8 5.6311 -4.9158 0.7681 15 6 5.5381 -5.9680 2.8382 16 6 6.6993 -6.6305 2.6338 17 6 7.2195 -7.5308 3.6643 18 7 6.6558 -7.7701 4.8205 19 6 7.2901 -8.6063 5.6012 20 6 8.4349 -9.1075 5.1129 21 16 8.7107 -8.4610 3.5535 22 6 3.9915 -2.1314 1.1325 23 6 3.5170 -1.2164 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 1.4194 -3.0188 -0.9552 26 1 0.2038 -2.3409 0.1597 27 1 1.3714 -4.3737 1.0881 28 1 1.5913 -2.9207 2.0927 29 1 3.3729 -4.5299 2.8417 30 1 4.9944 -6.1034 3.7615 31 1 7.2428 -6.4954 1.7103 32 1 6.9161 -8.8758 6.5779 33 1 9.0801 -9.8070 5.6236 34 1 3.7077 -1.6985 2.0917 35 1 5.0755 -2.2349 1.0866 36 1 3.8771 -1.5998 -0.9559 37 1 3.8982 -0.2073 0.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177526433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = 9.381064 kcal Electronic energy + Delta-G solvation = -19938.697529 eV Core-core repulsion = 16807.442227 eV Total energy + Delta-G solvation = -3131.255302 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.99585 -39.46875 -36.82613 -33.96210 -33.69360 -31.59061 -29.90365 -29.64394 -27.55910 -26.08312 -23.35491 -21.95228 -21.47224 -20.41235 -19.62096 -18.85140 -18.46543 -17.00097 -16.23681 -15.81179 -15.53068 -14.88525 -14.51761 -14.34327 -14.18754 -14.12725 -13.29496 -13.13731 -12.73510 -12.34420 -12.30818 -12.08628 -11.84724 -11.62079 -10.99928 -10.86204 -10.73765 -10.69553 -10.19091 -10.15709 -9.99969 -9.81655 -9.72602 -9.51439 -8.99814 -8.86426 -8.63727 -8.48029 -8.26974 -6.09722 -4.00481 -0.15414 0.92704 1.38778 1.44382 2.64023 3.28834 3.36998 3.38384 3.48721 3.51723 3.87455 4.39416 4.71810 4.77129 4.98672 5.08107 5.16533 5.20183 5.71365 5.73601 5.88324 5.96753 6.08628 6.21394 6.48342 6.49528 6.72759 6.77174 6.90612 6.97782 7.12481 7.25022 7.31923 7.44864 7.65839 7.71828 7.76863 7.92383 8.38719 8.50706 8.96810 9.55222 10.99756 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.002664 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.196620 B =10508.026637 C =10709.165305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.264 1.264 7 C -0.487 4.487 8 C 0.012 3.988 9 C -0.114 4.114 10 C 0.153 3.847 11 H 0.080 0.920 12 N -0.713 5.713 13 C 0.535 3.465 14 O -0.544 6.544 15 C -0.131 4.131 16 C -0.036 4.036 17 C 0.073 3.927 18 N -0.453 5.453 19 C 0.037 3.963 20 C -0.291 4.291 21 S 0.167 5.833 22 C -0.112 4.112 23 C -0.019 4.019 24 H 0.264 0.736 25 H 0.006 0.994 26 H 0.061 0.939 27 H 0.036 0.964 28 H 0.055 0.945 29 H 0.397 0.603 30 H 0.139 0.861 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.051 0.949 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.328 -16.609 10.401 24.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.507 4.507 8 C -0.026 4.026 9 C -0.153 4.153 10 C 0.050 3.950 11 H 0.098 0.902 12 N -0.361 5.361 13 C 0.322 3.678 14 O -0.423 6.423 15 C -0.159 4.159 16 C -0.059 4.059 17 C -0.198 4.198 18 N -0.168 5.168 19 C -0.118 4.118 20 C -0.431 4.431 21 S 0.425 5.575 22 C -0.151 4.151 23 C -0.057 4.057 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.231 0.769 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.196 0.804 34 H 0.070 0.930 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 14.926 -16.283 9.052 23.872 hybrid contribution -0.090 0.464 1.614 1.682 sum 14.835 -15.819 10.666 24.168 Atomic orbital electron populations 1.69829 1.06132 1.26929 1.50001 1.24842 0.94716 0.98583 0.94543 0.86678 0.80004 0.83247 0.78553 1.20392 1.21696 1.18923 1.20057 0.89409 0.91453 1.49734 1.19347 0.98724 0.92794 0.91690 1.21935 0.92262 0.98683 1.02406 1.21108 0.94558 0.88978 0.90354 0.90228 1.46350 1.23144 1.45109 1.21537 1.18213 0.81696 0.80832 0.87032 1.90822 1.58321 1.65435 1.27769 1.23344 0.96640 0.96232 0.99719 1.21403 0.96046 0.92811 0.95642 1.26177 0.95601 1.02124 0.95901 1.67025 1.31614 1.15663 1.02450 1.21726 0.92659 0.95974 1.01477 1.26549 1.04558 1.10471 1.01518 1.83941 1.23428 1.37126 1.13007 1.21881 0.97288 0.95079 1.00880 1.19790 0.96566 0.95502 0.93872 0.92606 0.97513 0.92056 0.94530 0.92650 0.76944 0.84330 0.83006 0.80872 0.80399 0.93030 0.94444 0.96269 0.94617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.41 12.73 55.43 0.71 -24.70 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 21.09 27.53 -169.99 -4.68 16.41 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.26 -6.10 6.11 56.52 0.35 -5.75 16 7 C -0.49 -12.76 5.51 -98.93 -0.55 -13.30 16 8 C 0.01 0.30 5.97 -27.48 -0.16 0.14 16 9 C -0.11 -2.31 5.40 -26.63 -0.14 -2.46 16 10 C 0.15 2.98 2.35 -67.97 -0.16 2.82 16 11 H 0.08 1.71 7.58 -51.93 -0.39 1.32 16 12 N -0.71 -11.24 5.07 -55.29 -0.28 -11.53 16 13 C 0.54 8.52 7.70 -13.04 -0.10 8.42 16 14 O -0.54 -10.60 15.90 5.17 0.08 -10.52 16 15 C -0.13 -1.63 9.64 -37.43 -0.36 -1.99 16 16 C -0.04 -0.41 9.72 -37.37 -0.36 -0.78 16 17 C 0.07 0.78 7.34 -14.70 -0.11 0.67 16 18 N -0.45 -5.05 10.12 -11.70 -0.12 -5.17 16 19 C 0.04 0.32 11.24 -19.42 -0.22 0.11 16 20 C -0.29 -2.07 11.08 29.30 0.32 -1.75 16 21 S 0.17 1.32 23.20 -107.50 -2.49 -1.17 16 22 C -0.11 -2.37 5.50 -26.64 -0.15 -2.52 16 23 C -0.02 -0.46 5.59 -27.50 -0.15 -0.61 16 24 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.06 1.63 7.07 -51.93 -0.37 1.26 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.40 5.10 8.58 -40.82 -0.35 4.75 16 30 H 0.14 1.51 7.70 -52.49 -0.40 1.11 16 31 H 0.15 1.68 7.52 -52.49 -0.39 1.29 16 32 H 0.17 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.18 0.77 8.06 -52.49 -0.42 0.34 16 34 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.04 0.84 4.59 -51.93 -0.24 0.61 16 LS Contribution 323.68 15.07 4.88 4.88 Total: -1.00 -30.83 323.68 -8.87 -39.69 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -4.72 Total: 1.40 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -2.24 Total: -9.29 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: 0.31 Total: -41.40 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.08 Total: -10.52 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.68 Total: 16.41 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -2.49 Total: -1.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.83 -8.87 -39.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177526433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.074 kcal (2) G-P(sol) polarization free energy of solvation -30.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds