Wall clock time and date at job start Tue Mar 31 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99644 * 2 1 4 4 H 1.48501 * 109.46919 * 270.00115 * 3 2 1 5 5 H 1.48490 * 109.47495 * 30.00222 * 3 2 1 6 6 H 1.48504 * 109.46744 * 150.00605 * 3 2 1 7 7 C 1.37874 * 120.00204 * 180.02562 * 2 1 3 8 8 C 1.51272 * 120.84948 * 359.97438 * 7 2 1 9 9 C 1.53235 * 108.53578 * 231.33035 * 8 7 2 10 10 C 1.52959 * 109.40282 * 305.37054 * 9 8 7 11 11 H 1.08997 * 109.41749 * 303.56563 * 10 9 8 12 12 N 1.46504 * 109.40905 * 183.70513 * 10 9 8 13 13 C 1.34780 * 119.99741 * 155.00567 * 12 10 9 14 14 O 1.21725 * 119.99597 * 359.97438 * 13 12 10 15 15 C 1.46252 * 119.99928 * 180.02562 * 13 12 10 16 16 C 1.35241 * 119.99861 * 179.97438 * 15 13 12 17 17 C 1.46396 * 119.99754 * 179.97438 * 16 15 13 18 18 N 1.30832 * 125.55322 * 359.69230 * 17 16 15 19 19 C 1.30805 * 115.81295 * 180.26146 * 18 17 16 20 20 C 1.34168 * 115.80706 * 0.02562 * 19 18 17 21 21 S 1.71053 * 109.15652 * 0.02562 * 20 19 18 22 22 C 1.52959 * 109.81664 * 63.60531 * 10 9 8 23 23 C 1.51263 * 120.85082 * 179.97438 * 7 2 1 24 24 H 0.96995 * 120.00341 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.62073 * 111.61523 * 8 7 2 26 26 H 1.08997 * 109.62322 * 351.04316 * 8 7 2 27 27 H 1.08998 * 109.47722 * 185.39358 * 9 8 7 28 28 H 1.09000 * 109.49335 * 65.35948 * 9 8 7 29 29 H 0.97001 * 120.00287 * 335.00283 * 12 10 9 30 30 H 1.08001 * 119.99986 * 359.97438 * 15 13 12 31 31 H 1.08001 * 120.00157 * 359.97438 * 16 15 13 32 32 H 1.08002 * 122.09360 * 179.97438 * 19 18 17 33 33 H 1.07998 * 125.42149 * 179.97438 * 20 19 18 34 34 H 1.08997 * 109.48435 * 56.37260 * 22 10 9 35 35 H 1.08996 * 109.48747 * 176.42014 * 22 10 9 36 36 H 1.09006 * 109.62726 * 248.38499 * 23 7 2 37 37 H 1.09001 * 109.62901 * 8.76019 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 6 1.2677 -2.5151 -0.0005 9 6 1.8237 -3.3830 1.1334 10 6 3.3406 -3.5073 0.9811 11 1 3.5741 -3.9110 -0.0040 12 7 3.8612 -4.4083 2.0124 13 6 5.0187 -5.0681 1.8089 14 8 5.6311 -4.9158 0.7681 15 6 5.5381 -5.9680 2.8382 16 6 6.6993 -6.6305 2.6338 17 6 7.2195 -7.5308 3.6643 18 7 6.6558 -7.7701 4.8205 19 6 7.2901 -8.6063 5.6012 20 6 8.4349 -9.1075 5.1129 21 16 8.7107 -8.4610 3.5535 22 6 3.9915 -2.1314 1.1325 23 6 3.5170 -1.2164 -0.0011 24 1 -0.4850 0.8400 0.0004 25 1 1.4194 -3.0188 -0.9552 26 1 0.2038 -2.3409 0.1597 27 1 1.3714 -4.3737 1.0881 28 1 1.5913 -2.9207 2.0927 29 1 3.3729 -4.5299 2.8417 30 1 4.9944 -6.1034 3.7615 31 1 7.2428 -6.4954 1.7103 32 1 6.9161 -8.8758 6.5779 33 1 9.0801 -9.8070 5.6236 34 1 3.7077 -1.6985 2.0917 35 1 5.0755 -2.2349 1.0866 36 1 3.8771 -1.5998 -0.9559 37 1 3.8982 -0.2073 0.1553 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177526433.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:22 Heat of formation + Delta-G solvation = -10.438687 kcal Electronic energy + Delta-G solvation = -19939.556978 eV Core-core repulsion = 16807.442227 eV Total energy + Delta-G solvation = -3132.114751 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.98823 -40.50790 -38.48378 -35.38489 -34.85455 -33.38845 -31.48694 -30.69002 -29.16221 -27.06409 -24.58201 -23.45227 -23.16612 -21.54395 -21.26937 -19.84850 -19.25639 -18.28413 -17.70492 -17.12981 -16.51774 -16.40887 -15.89318 -15.47526 -15.46016 -14.93679 -14.89877 -14.51958 -14.20956 -14.04816 -13.92493 -13.40792 -13.24561 -12.78000 -12.66899 -12.55887 -12.44795 -11.94286 -11.82318 -11.55538 -11.38643 -11.16058 -10.87664 -10.79180 -10.64759 -10.52997 -10.49075 -9.91203 -9.33158 -8.16150 -6.10442 -0.91579 0.26675 0.59736 0.76981 1.39719 1.42637 1.50575 1.88407 2.27059 2.38347 2.41948 3.09812 3.14315 3.78808 4.05784 4.12170 4.21594 4.33903 4.35386 4.47806 4.51157 4.72248 4.86619 4.94290 4.98440 5.08307 5.12757 5.19218 5.23598 5.25403 5.26319 5.56850 5.59758 5.70047 5.76993 5.83467 6.36006 6.63551 6.66808 6.95226 7.27703 7.47728 8.94350 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040151 B = 0.002664 C = 0.002614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.196620 B =10508.026637 C =10709.165305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.251 1.251 7 C -0.498 4.498 8 C 0.007 3.993 9 C -0.101 4.101 10 C 0.165 3.835 11 H 0.059 0.941 12 N -0.705 5.705 13 C 0.539 3.461 14 O -0.585 6.585 15 C -0.149 4.149 16 C -0.013 4.013 17 C 0.031 3.969 18 N -0.470 5.470 19 C 0.014 3.986 20 C -0.272 4.272 21 S 0.208 5.792 22 C -0.106 4.106 23 C -0.021 4.021 24 H 0.263 0.737 25 H -0.002 1.002 26 H 0.034 0.966 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.414 0.586 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.195 0.805 33 H 0.211 0.789 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.014 0.986 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.620 -18.262 12.295 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.176 1.176 7 C -0.517 4.517 8 C -0.031 4.031 9 C -0.139 4.139 10 C 0.061 3.939 11 H 0.077 0.923 12 N -0.354 5.354 13 C 0.328 3.672 14 O -0.468 6.468 15 C -0.176 4.176 16 C -0.036 4.036 17 C -0.239 4.239 18 N -0.186 5.186 19 C -0.141 4.141 20 C -0.412 4.412 21 S 0.465 5.535 22 C -0.145 4.145 23 C -0.059 4.059 24 H 0.072 0.928 25 H 0.016 0.984 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.250 0.750 30 H 0.172 0.828 31 H 0.169 0.831 32 H 0.212 0.788 33 H 0.228 0.772 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.032 0.968 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 17.218 -17.946 10.970 27.182 hybrid contribution -0.660 0.778 1.046 1.461 sum 16.558 -17.168 12.016 26.707 Atomic orbital electron populations 1.69951 1.07504 1.27487 1.51944 1.25567 0.95362 1.01648 0.94825 0.85849 0.79386 0.79763 0.78568 1.20291 1.21650 1.17550 1.20599 0.90849 0.92012 1.48286 1.19316 0.97353 0.93401 0.93020 1.21702 0.92766 0.98973 1.00491 1.20672 0.93862 0.88820 0.90572 0.92318 1.46057 1.23487 1.44496 1.21408 1.18673 0.80966 0.80494 0.87057 1.90799 1.59425 1.66888 1.29655 1.23034 0.97837 0.97246 0.99496 1.21500 0.95104 0.91426 0.95608 1.26048 0.97692 1.03997 0.96151 1.67001 1.32604 1.16128 1.02821 1.22118 0.93389 0.96249 1.02353 1.27041 1.03945 1.09317 1.00893 1.83850 1.21073 1.35488 1.13086 1.21765 0.97510 0.95395 0.99785 1.19794 0.95052 0.96313 0.94772 0.92753 0.98388 0.94725 0.92225 0.92367 0.74979 0.82849 0.83102 0.78803 0.77191 0.92628 0.94071 0.96779 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 12.73 21.45 0.27 -53.94 16 2 C 0.02 1.34 5.46 84.65 0.46 1.80 16 3 Si 0.94 43.39 27.53 68.60 1.89 45.28 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.25 -10.98 6.11 99.48 0.61 -10.37 16 7 C -0.50 -26.34 5.51 -16.17 -0.09 -26.42 16 8 C 0.01 0.35 5.97 30.11 0.18 0.53 16 9 C -0.10 -4.03 5.40 30.66 0.17 -3.86 16 10 C 0.17 6.34 2.35 44.96 0.11 6.44 16 11 H 0.06 2.53 7.58 -2.39 -0.02 2.51 16 12 N -0.70 -21.43 5.07 -447.03 -2.27 -23.70 16 13 C 0.54 16.80 7.70 86.32 0.66 17.46 16 14 O -0.59 -22.82 15.90 -4.43 -0.07 -22.89 16 15 C -0.15 -3.53 9.64 23.66 0.23 -3.30 16 16 C -0.01 -0.30 9.72 23.70 0.23 -0.06 16 17 C 0.03 0.60 7.34 86.97 0.64 1.24 16 18 N -0.47 -9.55 10.12 -190.91 -1.93 -11.48 16 19 C 0.01 0.21 11.24 83.92 0.94 1.15 16 20 C -0.27 -2.86 11.08 66.89 0.74 -2.12 16 21 S 0.21 2.70 23.20 -56.49 -1.31 1.39 16 22 C -0.11 -4.37 5.50 30.65 0.17 -4.20 16 23 C -0.02 -1.00 5.59 30.10 0.17 -0.84 16 24 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 25 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 26 H 0.03 1.89 7.07 -2.39 -0.02 1.87 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.41 9.88 8.58 -92.71 -0.80 9.08 16 30 H 0.15 3.14 7.70 -2.91 -0.02 3.12 16 31 H 0.15 3.25 7.52 -2.91 -0.02 3.23 16 32 H 0.20 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.21 0.77 8.06 -2.91 -0.02 0.74 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.04 1.71 4.59 -2.39 -0.01 1.70 16 Total: -1.00 -67.27 323.68 1.39 -65.88 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.20 Total: 11.65 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 4.61 Total: -12.18 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -3.93 Total: -89.12 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.07 Total: -22.89 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.89 Total: 45.28 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.31 Total: 1.39 kcal Total: -67.27 1.39 -65.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177526433.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.437 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds