Wall clock time and date at job start Tue Mar 31 2020 06:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47186 * 299.99672 * 3 2 1 6 6 H 1.48495 * 109.46900 * 59.99927 * 3 2 1 7 7 C 1.39933 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99959 * 196.80565 * 7 2 1 9 9 C 1.41413 * 119.99997 * 16.79776 * 7 2 1 10 10 C 1.40781 * 120.20810 * 25.17825 * 9 7 2 11 11 C 1.37641 * 119.89574 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31881 * 359.97438 * 11 10 9 13 13 C 1.39266 * 120.42935 * 0.02562 * 12 11 10 14 14 N 1.39828 * 119.95466 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00438 * 145.77254 * 14 13 12 16 16 O 1.21714 * 120.00187 * 354.89763 * 15 14 13 17 17 C 1.43206 * 120.00121 * 174.89000 * 15 14 13 18 18 C 8.94804 * 106.16822 * 170.12810 * 2 1 3 19 19 C 9.00997 * 134.49701 * 161.32837 * 7 1 2 20 20 C 1.40274 * 120.58453 * 159.37364 * 19 18 17 21 21 C 1.38286 * 118.26229 * 180.19138 * 20 19 18 22 22 C 1.38395 * 119.33691 * 359.53581 * 21 20 19 23 23 N 1.31937 * 121.13783 * 0.24852 * 22 21 20 24 24 C 1.31657 * 121.90852 * 0.02562 * 23 22 21 25 25 C 1.38315 * 120.10043 * 0.26825 * 13 12 11 26 26 H 0.97006 * 119.99794 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05366 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.84644 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.78234 * 180.02562 * 12 11 10 30 30 H 0.97003 * 119.99693 * 325.77603 * 14 13 12 31 31 H 1.07999 * 120.86811 * 0.02562 * 20 19 18 32 32 H 1.08001 * 120.33075 * 179.80406 * 21 20 19 33 33 H 1.07999 * 119.42996 * 180.22831 * 22 21 20 34 34 H 1.08004 * 119.74022 * 180.02562 * 24 23 22 35 35 H 1.07997 * 120.16814 * 179.72634 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2710 9 6 1.3461 -2.4106 -0.3528 10 6 0.2110 -2.3742 -1.1848 11 6 -0.4279 -3.5448 -1.5251 12 6 0.0408 -4.7601 -1.0533 13 6 1.1626 -4.8116 -0.2296 14 7 1.6275 -6.0437 0.2405 15 6 2.9492 -6.2449 0.4105 16 8 3.7441 -5.3892 0.0679 17 6 3.4185 -7.4655 0.9943 18 6 3.8000 -8.4669 1.4734 19 6 4.2684 -9.6866 2.0618 20 6 5.6194 -10.0520 1.9670 21 6 6.0184 -11.2414 2.5488 22 6 5.0839 -12.0208 3.2080 23 7 3.8199 -11.6508 3.2860 24 6 3.3880 -10.5310 2.7447 25 6 1.8145 -3.6455 0.1284 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1575 -1.4292 -1.5560 28 1 -1.2989 -3.5160 -2.1630 29 1 -0.4670 -5.6734 -1.3262 30 1 0.9987 -6.7537 0.4442 31 1 6.3288 -9.4223 1.4507 32 1 7.0499 -11.5567 2.4932 33 1 5.3946 -12.9481 3.6661 34 1 2.3455 -10.2619 2.8301 35 1 2.6819 -3.6838 0.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177778411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:47 Heat of formation + Delta-G solvation = 75.529745 kcal Electronic energy + Delta-G solvation = -20163.475933 eV Core-core repulsion = 16899.645102 eV Total energy + Delta-G solvation = -3263.830831 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.47388 -39.76786 -37.23198 -34.71064 -34.55744 -33.10931 -32.62077 -31.09179 -29.86626 -28.32433 -25.38238 -24.98902 -23.93536 -22.99523 -21.05935 -20.49591 -18.83073 -17.87538 -17.48334 -16.84445 -16.63947 -15.67735 -15.31630 -14.86432 -14.64538 -14.51419 -14.35615 -14.14152 -13.55096 -13.15881 -12.94643 -12.58987 -12.24051 -11.88756 -11.68081 -11.24795 -11.21719 -11.13427 -10.94860 -10.47539 -10.34591 -10.19452 -9.89914 -9.78423 -9.60737 -9.19099 -9.15310 -9.09420 -7.49368 -6.99784 -6.74505 -4.36434 0.15712 0.78894 1.81043 2.11775 2.74472 2.90118 3.09422 3.15795 3.16313 3.19942 3.36748 3.88119 3.95040 3.97991 4.21521 4.39322 4.44551 4.62083 4.68119 4.88855 5.20954 5.36312 5.60168 5.67720 5.69749 6.16357 6.20517 6.34544 6.60452 6.92205 6.97149 6.98836 7.03042 7.21905 7.47368 7.47457 7.65334 7.90213 8.04522 8.07666 8.17342 8.48731 8.64978 8.90390 8.94290 10.19181 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.002593 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.323453 B =10795.403872 C =11472.339809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.257 4.257 13 C 0.148 3.852 14 N -0.649 5.649 15 C 0.617 3.383 16 O -0.495 6.495 17 C -0.159 4.159 18 C -0.067 4.067 19 C -0.044 4.044 20 C -0.045 4.045 21 C -0.172 4.172 22 C 0.109 3.891 23 N -0.483 5.483 24 C 0.134 3.866 25 C -0.210 4.210 26 H 0.280 0.720 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.403 0.597 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 -17.924 4.199 19.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.200 1.200 7 C -0.486 4.486 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.188 4.188 11 C -0.111 4.111 12 C -0.278 4.278 13 C 0.056 3.944 14 N -0.293 5.293 15 C 0.403 3.597 16 O -0.370 6.370 17 C -0.162 4.162 18 C -0.070 4.070 19 C -0.046 4.046 20 C -0.071 4.071 21 C -0.192 4.192 22 C -0.047 4.047 23 N -0.191 5.191 24 C -0.024 4.024 25 C -0.231 4.231 26 H 0.091 0.909 27 H 0.138 0.862 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.238 0.762 31 H 0.161 0.839 32 H 0.161 0.839 33 H 0.178 0.822 34 H 0.182 0.818 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.949 -17.686 4.435 19.180 hybrid contribution 0.623 0.896 -0.303 1.133 sum 6.572 -16.790 4.132 18.498 Atomic orbital electron populations 1.69834 1.07547 1.29105 1.35477 1.25917 0.94757 1.01350 0.92214 0.86253 0.81115 0.80829 0.78509 1.18325 1.19680 1.20008 1.19625 0.97853 0.90876 1.40249 0.90220 1.17492 0.90920 0.91589 0.88384 1.21381 0.99195 0.96940 1.01256 1.20470 0.98571 0.92607 0.99455 1.20038 1.02154 0.97078 1.08573 1.17390 0.96507 0.82733 0.97722 1.43223 1.06013 1.15606 1.64413 1.14698 0.82999 0.82840 0.79182 1.90963 1.54815 1.43145 1.48052 1.20911 1.00032 0.94368 1.00868 1.18880 0.99666 0.92439 0.96004 1.17071 0.94537 0.91758 1.01210 1.21853 0.94355 0.95724 0.95137 1.22130 1.01844 0.95430 0.99746 1.23002 0.88346 0.99031 0.94358 1.67746 1.17234 1.15831 1.18289 1.23103 0.99986 0.88447 0.90864 1.20995 1.04386 0.90983 1.06749 0.90931 0.86186 0.88840 0.89073 0.76235 0.83883 0.83907 0.82183 0.81770 0.87532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.51 10.94 55.55 0.61 -19.90 16 2 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 3 Si 0.91 18.98 29.59 -169.99 -5.03 13.95 16 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.62 7.11 56.52 0.40 -5.21 16 7 C -0.46 -12.45 9.05 -37.74 -0.34 -12.79 16 8 H 0.08 2.15 7.90 -52.49 -0.41 1.73 16 9 C 0.12 3.26 5.57 -106.85 -0.59 2.66 16 10 C -0.17 -4.36 8.69 -38.84 -0.34 -4.70 16 11 C -0.09 -2.12 10.02 -39.69 -0.40 -2.51 16 12 C -0.26 -5.58 9.97 -39.09 -0.39 -5.97 16 13 C 0.15 3.32 6.25 -83.80 -0.52 2.80 16 14 N -0.65 -11.77 5.32 -12.09 -0.06 -11.84 16 15 C 0.62 11.62 7.38 -14.33 -0.11 11.52 16 16 O -0.49 -11.43 14.84 5.18 0.08 -11.35 16 17 C -0.16 -2.40 13.62 -38.84 -0.53 -2.93 16 18 C -0.07 -0.85 13.29 -38.80 -0.52 -1.37 16 19 C -0.04 -0.45 5.76 -106.58 -0.61 -1.06 16 20 C -0.05 -0.38 9.92 -38.80 -0.38 -0.76 16 21 C -0.17 -1.10 10.09 -39.51 -0.40 -1.50 16 22 C 0.11 0.77 11.17 -17.45 -0.19 0.58 16 23 N -0.48 -4.62 10.34 -12.83 -0.13 -4.76 16 24 C 0.13 1.27 10.94 -17.04 -0.19 1.08 16 25 C -0.21 -5.41 8.39 -38.67 -0.32 -5.74 16 26 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 27 H 0.12 3.19 6.17 -52.48 -0.32 2.87 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.40 5.65 8.78 -40.82 -0.36 5.29 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 32 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 33 H 0.16 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.11 2.82 6.48 -52.49 -0.34 2.48 16 LS Contribution 323.58 15.07 4.88 4.88 Total: -1.00 -31.54 323.58 -8.70 -40.24 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -3.11 Total: 7.66 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -5.93 Total: -18.87 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.41 Total: -36.49 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: 0.08 Total: -11.35 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.54 -8.70 -40.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177778411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.768 kcal (2) G-P(sol) polarization free energy of solvation -31.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds