Wall clock time and date at job start Tue Mar 31 2020 06:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86799 * 119.99970 * 2 1 4 4 H 1.48504 * 109.46805 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47186 * 299.99672 * 3 2 1 6 6 H 1.48495 * 109.46900 * 59.99927 * 3 2 1 7 7 C 1.39933 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99959 * 196.80565 * 7 2 1 9 9 C 1.41413 * 119.99997 * 16.79776 * 7 2 1 10 10 C 1.40781 * 120.20810 * 25.17825 * 9 7 2 11 11 C 1.37641 * 119.89574 * 179.97438 * 10 9 7 12 12 C 1.38531 * 120.31881 * 359.97438 * 11 10 9 13 13 C 1.39266 * 120.42935 * 0.02562 * 12 11 10 14 14 N 1.39828 * 119.95466 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00438 * 145.77254 * 14 13 12 16 16 O 1.21714 * 120.00187 * 354.89763 * 15 14 13 17 17 C 1.43206 * 120.00121 * 174.89000 * 15 14 13 18 18 C 8.94804 * 106.16822 * 170.12810 * 2 1 3 19 19 C 9.00997 * 134.49701 * 161.32837 * 7 1 2 20 20 C 1.40274 * 120.58453 * 159.37364 * 19 18 17 21 21 C 1.38286 * 118.26229 * 180.19138 * 20 19 18 22 22 C 1.38395 * 119.33691 * 359.53581 * 21 20 19 23 23 N 1.31937 * 121.13783 * 0.24852 * 22 21 20 24 24 C 1.31657 * 121.90852 * 0.02562 * 23 22 21 25 25 C 1.38315 * 120.10043 * 0.26825 * 13 12 11 26 26 H 0.97006 * 119.99794 * 0.02562 * 1 2 3 27 27 H 1.08009 * 120.05366 * 0.02562 * 10 9 7 28 28 H 1.07994 * 119.84644 * 179.97438 * 11 10 9 29 29 H 1.08002 * 119.78234 * 180.02562 * 12 11 10 30 30 H 0.97003 * 119.99693 * 325.77603 * 14 13 12 31 31 H 1.07999 * 120.86811 * 0.02562 * 20 19 18 32 32 H 1.08001 * 120.33075 * 179.80406 * 21 20 19 33 33 H 1.07999 * 119.42996 * 180.22831 * 22 21 20 34 34 H 1.08004 * 119.74022 * 180.02562 * 24 23 22 35 35 H 1.07997 * 120.16814 * 179.72634 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.7024 1.3463 0.0006 5 1 1.8836 2.3964 -1.2126 6 1 1.8835 2.3964 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2710 9 6 1.3461 -2.4106 -0.3528 10 6 0.2110 -2.3742 -1.1848 11 6 -0.4279 -3.5448 -1.5251 12 6 0.0408 -4.7601 -1.0533 13 6 1.1626 -4.8116 -0.2296 14 7 1.6275 -6.0437 0.2405 15 6 2.9492 -6.2449 0.4105 16 8 3.7441 -5.3892 0.0679 17 6 3.4185 -7.4655 0.9943 18 6 3.8000 -8.4669 1.4734 19 6 4.2684 -9.6866 2.0618 20 6 5.6194 -10.0520 1.9670 21 6 6.0184 -11.2414 2.5488 22 6 5.0839 -12.0208 3.2080 23 7 3.8199 -11.6508 3.2860 24 6 3.3880 -10.5310 2.7447 25 6 1.8145 -3.6455 0.1284 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1575 -1.4292 -1.5560 28 1 -1.2989 -3.5160 -2.1630 29 1 -0.4670 -5.6734 -1.3262 30 1 0.9987 -6.7537 0.4442 31 1 6.3288 -9.4223 1.4507 32 1 7.0499 -11.5567 2.4932 33 1 5.3946 -12.9481 3.6661 34 1 2.3455 -10.2619 2.8301 35 1 2.6819 -3.6838 0.7707 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177778411.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:46 Heat of formation + Delta-G solvation = 56.676678 kcal Electronic energy + Delta-G solvation = -20164.293463 eV Core-core repulsion = 16899.645102 eV Total energy + Delta-G solvation = -3264.648361 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.38997 -41.11167 -39.05011 -36.32645 -35.70333 -34.88806 -33.31247 -31.98537 -31.78944 -30.03736 -27.30710 -26.06802 -24.57376 -24.21381 -22.89068 -22.21647 -20.22084 -19.48791 -18.51669 -17.66094 -17.54301 -17.29862 -17.03807 -16.53001 -16.30776 -15.89416 -15.16348 -14.98857 -14.95326 -14.69667 -14.16963 -14.05307 -13.58459 -13.19951 -13.15334 -12.96818 -12.82576 -12.77191 -12.37984 -12.18872 -11.96535 -11.61465 -11.37667 -11.04706 -10.89780 -10.84509 -10.56658 -9.95544 -9.43124 -8.83739 -8.64107 -6.38990 -0.66891 0.17875 0.56205 0.91580 0.97466 1.22158 1.36632 1.48892 1.52192 1.85826 2.20910 2.32372 2.70982 2.88419 2.96981 3.48288 3.69095 3.75515 3.90880 3.97494 4.10531 4.43975 4.50289 4.59639 4.74153 4.90929 5.00065 5.05838 5.07154 5.07985 5.15433 5.29384 5.57696 5.66926 5.79224 5.87488 6.04011 6.06990 6.28374 6.41648 6.64381 6.84322 6.89157 6.96429 7.05277 8.31666 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.002593 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.323453 B =10795.403872 C =11472.339809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.266 1.266 5 H -0.258 1.258 6 H -0.262 1.262 7 C -0.501 4.501 8 H 0.063 0.937 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.090 4.090 12 C -0.244 4.244 13 C 0.154 3.846 14 N -0.638 5.638 15 C 0.624 3.376 16 O -0.549 6.549 17 C -0.213 4.213 18 C -0.005 4.005 19 C -0.078 4.078 20 C -0.046 4.046 21 C -0.162 4.162 22 C 0.115 3.885 23 N -0.508 5.508 24 C 0.135 3.865 25 C -0.238 4.238 26 H 0.290 0.710 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.135 0.865 30 H 0.425 0.575 31 H 0.153 0.847 32 H 0.179 0.821 33 H 0.194 0.806 34 H 0.175 0.825 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.405 -20.607 4.571 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.182 1.182 6 H -0.186 1.186 7 C -0.530 4.530 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.213 4.213 11 C -0.108 4.108 12 C -0.265 4.265 13 C 0.061 3.939 14 N -0.283 5.283 15 C 0.413 3.587 16 O -0.427 6.427 17 C -0.217 4.217 18 C -0.009 4.009 19 C -0.081 4.081 20 C -0.072 4.072 21 C -0.181 4.181 22 C -0.041 4.041 23 N -0.216 5.216 24 C -0.022 4.022 25 C -0.259 4.259 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.153 0.847 30 H 0.264 0.736 31 H 0.170 0.830 32 H 0.197 0.803 33 H 0.211 0.789 34 H 0.192 0.808 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.160 -20.427 4.820 21.873 hybrid contribution 0.598 1.357 -0.329 1.519 sum 6.758 -19.070 4.491 20.725 Atomic orbital electron populations 1.69855 1.08685 1.30601 1.35453 1.26703 0.95624 1.04239 0.91169 0.85170 0.79062 0.76182 0.79336 1.18997 1.18215 1.18633 1.19764 0.97543 0.92622 1.43075 0.91860 1.17831 0.92020 0.92253 0.89303 1.21359 0.99765 0.97764 1.02369 1.20860 0.98969 0.91974 0.99023 1.20486 1.01158 0.98363 1.06520 1.17463 0.96116 0.83373 0.96930 1.43053 1.06519 1.14752 1.63929 1.14963 0.82577 0.83283 0.77918 1.90931 1.56031 1.45357 1.50408 1.20018 1.02646 0.94837 1.04152 1.19229 0.96973 0.91681 0.92967 1.17203 0.95945 0.91401 1.03531 1.22120 0.93572 0.96624 0.94866 1.22500 1.03455 0.94050 0.98112 1.23672 0.87560 0.99847 0.92991 1.67829 1.18756 1.15890 1.19097 1.23266 1.00459 0.88281 0.90206 1.20964 1.04698 0.92301 1.07959 0.89901 0.87489 0.85461 0.84690 0.73624 0.82966 0.80346 0.78923 0.80805 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.58 10.94 21.82 0.24 -43.34 16 2 C 0.04 1.99 5.16 85.25 0.44 2.43 16 3 Si 0.98 40.06 29.59 68.60 2.03 42.09 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.50 -29.13 9.05 23.46 0.21 -28.92 16 8 H 0.06 3.72 7.90 -2.91 -0.02 3.69 16 9 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 10 C -0.19 -10.33 8.69 22.75 0.20 -10.13 16 11 C -0.09 -4.04 10.02 22.20 0.22 -3.82 16 12 C -0.24 -10.20 9.97 22.59 0.23 -9.98 16 13 C 0.15 7.01 6.25 38.13 0.24 7.24 16 14 N -0.64 -23.21 5.32 -310.38 -1.65 -24.86 16 15 C 0.62 24.39 7.38 85.49 0.63 25.02 16 16 O -0.55 -26.96 14.84 -4.39 -0.07 -27.03 16 17 C -0.21 -6.54 13.62 30.02 0.41 -6.14 16 18 C -0.01 -0.13 13.29 30.04 0.40 0.27 16 19 C -0.08 -1.47 5.76 -21.13 -0.12 -1.60 16 20 C -0.05 -0.65 9.92 22.78 0.23 -0.43 16 21 C -0.16 -1.43 10.09 22.32 0.23 -1.20 16 22 C 0.12 1.20 11.17 84.71 0.95 2.14 16 23 N -0.51 -8.36 10.34 -194.51 -2.01 -10.37 16 24 C 0.14 2.30 10.94 85.10 0.93 3.23 16 25 C -0.24 -12.99 8.39 22.86 0.19 -12.79 16 26 H 0.29 13.74 8.30 -92.70 -0.77 12.97 16 27 H 0.11 5.91 6.17 -2.91 -0.02 5.89 16 28 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 29 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 30 H 0.43 11.41 8.78 -92.71 -0.81 10.59 16 31 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.18 0.31 8.06 -2.91 -0.02 0.29 16 33 H 0.19 0.65 8.06 -2.91 -0.02 0.63 16 34 H 0.17 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.08 4.88 6.48 -2.91 -0.02 4.86 16 Total: -1.00 -73.75 323.58 4.13 -69.62 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.34 Total: 23.55 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 5.25 Total: -29.65 kcal Atomic # 7 Polarization: -75.15 SS G_CDS: -3.43 Total: -78.57 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.07 Total: -27.03 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -73.75 4.13 -69.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177778411.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.294 kcal (2) G-P(sol) polarization free energy of solvation -73.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds