Wall clock time and date at job start Tue Mar 31 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48495 * 109.47006 * 239.99780 * 3 2 1 5 5 H 1.48496 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47096 * 119.99600 * 3 2 1 7 7 C 1.39933 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99883 * 196.79023 * 7 2 1 9 9 C 1.41410 * 120.00446 * 16.79500 * 7 2 1 10 10 C 1.40782 * 120.20267 * 25.17212 * 9 7 2 11 11 C 1.37652 * 119.88676 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32770 * 359.97438 * 11 10 9 13 13 C 1.39277 * 120.42535 * 359.97438 * 12 11 10 14 14 N 1.39828 * 119.95464 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99933 * 145.77103 * 14 13 12 16 16 O 1.21675 * 120.00477 * 354.90256 * 15 14 13 17 17 C 1.43200 * 119.99366 * 174.89393 * 15 14 13 18 18 C 8.94813 * 106.16816 * 170.12590 * 2 1 3 19 19 C 9.00999 * 134.49945 * 161.32855 * 7 1 2 20 20 C 1.39679 * 119.75889 * 29.00005 * 19 18 17 21 21 C 1.38432 * 119.03604 * 179.97438 * 20 19 18 22 22 C 1.38739 * 118.52080 * 0.02562 * 21 20 19 23 23 C 1.38491 * 119.41911 * 0.24589 * 22 21 20 24 24 N 1.31563 * 120.93676 * 359.48031 * 23 22 21 25 25 C 1.38319 * 120.09831 * 0.27279 * 13 12 11 26 26 H 0.97002 * 119.99711 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.05880 * 0.02562 * 10 9 7 28 28 H 1.08007 * 119.83574 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78705 * 180.02562 * 12 11 10 30 30 H 0.96996 * 119.99229 * 325.77499 * 14 13 12 31 31 H 1.07998 * 120.48371 * 0.02562 * 20 19 18 32 32 H 1.07993 * 120.73611 * 180.02562 * 21 20 19 33 33 H 1.08008 * 120.28636 * 179.97438 * 22 21 20 34 34 H 1.08001 * 119.52861 * 179.74741 * 23 22 21 35 35 H 1.08002 * 120.16332 * 179.74171 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2707 9 6 1.3460 -2.4106 -0.3528 10 6 0.2108 -2.3741 -1.1845 11 6 -0.4287 -3.5449 -1.5239 12 6 0.0394 -4.7599 -1.0515 13 6 1.1619 -4.8116 -0.2287 14 7 1.6257 -6.0435 0.2431 15 6 2.9473 -6.2461 0.4121 16 8 3.7427 -5.3922 0.0675 17 6 3.4154 -7.4663 0.9974 18 6 3.8000 -8.4669 1.4738 19 6 4.2683 -9.6867 2.0617 20 6 3.5913 -10.8823 1.8101 21 6 4.0571 -12.0521 2.3854 22 6 5.1832 -11.9902 3.1935 23 6 5.8024 -10.7696 3.4051 24 7 5.3438 -9.6721 2.8430 25 6 1.8151 -3.6455 0.1276 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1577 -1.4293 -1.5557 28 1 -1.2999 -3.5159 -2.1618 29 1 -0.4689 -5.6732 -1.3236 30 1 0.9961 -6.7521 0.4486 31 1 2.7177 -10.8941 1.1753 32 1 3.5551 -12.9918 2.2090 33 1 5.5708 -12.8854 3.6570 34 1 6.6766 -10.7188 4.0372 35 1 2.6832 -3.6840 0.7690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177802648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:13 Heat of formation + Delta-G solvation = 80.134050 kcal Electronic energy + Delta-G solvation = -20166.309322 eV Core-core repulsion = 16902.678149 eV Total energy + Delta-G solvation = -3263.631173 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48470 -39.75174 -37.20931 -34.54044 -34.34547 -33.07437 -32.89307 -31.11459 -29.84425 -28.32812 -25.37585 -25.06189 -23.89659 -22.97712 -21.04067 -20.49549 -18.97692 -17.93215 -17.38143 -16.71741 -16.34695 -15.65023 -15.33675 -14.85966 -14.72712 -14.57733 -14.40686 -14.12740 -13.62302 -13.13382 -12.90657 -12.40185 -12.21594 -11.70601 -11.51941 -11.36079 -11.10314 -11.04585 -10.91095 -10.48903 -10.35004 -10.31039 -9.90809 -9.77719 -9.58210 -9.20932 -9.13423 -9.06455 -7.47204 -6.97636 -6.72137 -4.34123 0.20595 0.81949 1.66906 2.24764 2.76277 2.88906 3.10005 3.11347 3.14205 3.23733 3.41017 3.90271 3.96460 4.00774 4.31129 4.41289 4.58545 4.64271 4.68374 4.85412 5.19959 5.37042 5.59255 5.68321 5.71026 6.17424 6.22315 6.36465 6.62718 6.94727 6.99097 7.01133 7.05607 7.24149 7.48539 7.50332 7.67629 7.92278 8.06810 8.09724 8.19720 8.51070 8.67062 8.92596 8.96599 10.21496 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.002622 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.889640 B =10677.117835 C =11503.567631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.079 0.921 9 C 0.120 3.880 10 C -0.168 4.168 11 C -0.092 4.092 12 C -0.258 4.258 13 C 0.148 3.852 14 N -0.650 5.650 15 C 0.617 3.383 16 O -0.490 6.490 17 C -0.137 4.137 18 C -0.062 4.062 19 C 0.224 3.776 20 C -0.138 4.138 21 C -0.074 4.074 22 C -0.164 4.164 23 C 0.106 3.894 24 N -0.463 5.463 25 C -0.210 4.210 26 H 0.281 0.719 27 H 0.120 0.880 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.403 0.597 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.641 -20.792 4.714 21.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.142 4.142 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.487 4.487 8 H 0.097 0.903 9 C 0.117 3.883 10 C -0.188 4.188 11 C -0.111 4.111 12 C -0.279 4.279 13 C 0.057 3.943 14 N -0.293 5.293 15 C 0.403 3.597 16 O -0.364 6.364 17 C -0.143 4.143 18 C -0.065 4.065 19 C 0.089 3.911 20 C -0.158 4.158 21 C -0.100 4.100 22 C -0.184 4.184 23 C -0.053 4.053 24 N -0.172 5.172 25 C -0.231 4.231 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.237 0.763 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.452 -19.218 4.653 20.268 hybrid contribution -0.399 -0.538 0.075 0.674 sum 4.054 -19.756 4.728 20.715 Atomic orbital electron populations 1.69815 1.07539 1.29288 1.35356 1.25911 0.94759 1.01323 0.92199 0.86339 0.80106 0.80033 0.80099 1.18762 1.20373 1.18966 1.19571 0.97845 0.90903 1.40349 0.90264 1.17477 0.90922 0.91562 0.88360 1.21378 0.99211 0.96932 1.01286 1.20466 0.98566 0.92616 0.99462 1.20025 1.02148 0.97060 1.08650 1.17392 0.96501 0.82728 0.97709 1.43225 1.05970 1.15701 1.64412 1.14669 0.83024 0.82778 0.79230 1.90961 1.54755 1.43022 1.47711 1.20907 0.99784 0.93599 1.00019 1.18477 0.99393 0.92411 0.96228 1.16505 0.91860 0.88262 0.94447 1.22152 1.01055 0.91980 1.00657 1.21581 0.95328 0.98478 0.94586 1.22374 0.96779 0.99809 0.99460 1.22849 0.98823 0.87297 0.96298 1.67755 1.10765 1.31693 1.06999 1.21005 1.04382 0.90989 1.06750 0.90839 0.86194 0.88863 0.89090 0.76254 0.83840 0.83952 0.84150 0.81878 0.87489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.67 10.94 55.55 0.61 -20.06 16 2 C 0.08 1.94 5.16 -17.34 -0.09 1.85 16 3 Si 0.91 19.20 29.59 -169.99 -5.03 14.17 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.46 -12.60 9.05 -37.74 -0.34 -12.94 16 8 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 9 C 0.12 3.31 5.57 -106.85 -0.59 2.71 16 10 C -0.17 -4.40 8.69 -38.83 -0.34 -4.74 16 11 C -0.09 -2.13 10.01 -39.69 -0.40 -2.53 16 12 C -0.26 -5.62 9.97 -39.09 -0.39 -6.01 16 13 C 0.15 3.37 6.25 -83.79 -0.52 2.84 16 14 N -0.65 -11.99 5.32 -12.10 -0.06 -12.05 16 15 C 0.62 12.04 7.38 -14.34 -0.11 11.94 16 16 O -0.49 -11.69 14.84 5.21 0.08 -11.61 16 17 C -0.14 -2.24 13.61 -38.85 -0.53 -2.77 16 18 C -0.06 -0.90 13.45 -38.82 -0.52 -1.42 16 19 C 0.22 2.72 6.60 -84.89 -0.56 2.16 16 20 C -0.14 -1.17 9.81 -38.97 -0.38 -1.55 16 21 C -0.07 -0.45 10.16 -39.32 -0.40 -0.85 16 22 C -0.16 -0.97 10.11 -39.30 -0.40 -1.37 16 23 C 0.11 0.88 11.18 -17.57 -0.20 0.68 16 24 N -0.46 -5.76 10.28 -11.05 -0.11 -5.88 16 25 C -0.21 -5.49 8.39 -38.68 -0.32 -5.81 16 26 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 27 H 0.12 3.21 6.17 -52.49 -0.32 2.88 16 28 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.40 5.72 8.78 -40.82 -0.36 5.36 16 31 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.11 2.88 6.48 -52.49 -0.34 2.54 16 LS Contribution 323.65 15.07 4.88 4.88 Total: -1.00 -32.59 323.65 -8.85 -41.43 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -3.11 Total: 6.93 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -6.09 Total: -17.81 kcal Atomic # 7 Polarization: -38.42 SS G_CDS: 0.43 Total: -37.99 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.08 Total: -11.61 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.59 -8.85 -41.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177802648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.566 kcal (2) G-P(sol) polarization free energy of solvation -32.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds