Wall clock time and date at job start Tue Mar 31 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86800 * 120.00241 * 2 1 4 4 H 1.48495 * 109.47006 * 239.99780 * 3 2 1 5 5 H 1.48496 * 109.46925 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47096 * 119.99600 * 3 2 1 7 7 C 1.39933 * 119.99489 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99883 * 196.79023 * 7 2 1 9 9 C 1.41410 * 120.00446 * 16.79500 * 7 2 1 10 10 C 1.40782 * 120.20267 * 25.17212 * 9 7 2 11 11 C 1.37652 * 119.88676 * 180.02562 * 10 9 7 12 12 C 1.38517 * 120.32770 * 359.97438 * 11 10 9 13 13 C 1.39277 * 120.42535 * 359.97438 * 12 11 10 14 14 N 1.39828 * 119.95464 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99933 * 145.77103 * 14 13 12 16 16 O 1.21675 * 120.00477 * 354.90256 * 15 14 13 17 17 C 1.43200 * 119.99366 * 174.89393 * 15 14 13 18 18 C 8.94813 * 106.16816 * 170.12590 * 2 1 3 19 19 C 9.00999 * 134.49945 * 161.32855 * 7 1 2 20 20 C 1.39679 * 119.75889 * 29.00005 * 19 18 17 21 21 C 1.38432 * 119.03604 * 179.97438 * 20 19 18 22 22 C 1.38739 * 118.52080 * 0.02562 * 21 20 19 23 23 C 1.38491 * 119.41911 * 0.24589 * 22 21 20 24 24 N 1.31563 * 120.93676 * 359.48031 * 23 22 21 25 25 C 1.38319 * 120.09831 * 0.27279 * 13 12 11 26 26 H 0.97002 * 119.99711 * 0.02562 * 1 2 3 27 27 H 1.07995 * 120.05880 * 0.02562 * 10 9 7 28 28 H 1.08007 * 119.83574 * 179.97438 * 11 10 9 29 29 H 1.08001 * 119.78705 * 180.02562 * 12 11 10 30 30 H 0.96996 * 119.99229 * 325.77499 * 14 13 12 31 31 H 1.07998 * 120.48371 * 0.02562 * 20 19 18 32 32 H 1.07993 * 120.73611 * 180.02562 * 21 20 19 33 33 H 1.08008 * 120.28636 * 179.97438 * 22 21 20 34 34 H 1.08001 * 119.52861 * 179.74741 * 23 22 21 35 35 H 1.08002 * 120.16332 * 179.74171 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 3.0961 1.6963 -1.2124 5 1 1.2774 2.7464 -0.0006 6 1 3.0961 1.6964 1.2126 7 6 2.0078 -1.2119 0.0005 8 1 3.0533 -1.2318 0.2707 9 6 1.3460 -2.4106 -0.3528 10 6 0.2108 -2.3741 -1.1845 11 6 -0.4287 -3.5449 -1.5239 12 6 0.0394 -4.7599 -1.0515 13 6 1.1619 -4.8116 -0.2287 14 7 1.6257 -6.0435 0.2431 15 6 2.9473 -6.2461 0.4121 16 8 3.7427 -5.3922 0.0675 17 6 3.4154 -7.4663 0.9974 18 6 3.8000 -8.4669 1.4738 19 6 4.2683 -9.6867 2.0617 20 6 3.5913 -10.8823 1.8101 21 6 4.0571 -12.0521 2.3854 22 6 5.1832 -11.9902 3.1935 23 6 5.8024 -10.7696 3.4051 24 7 5.3438 -9.6721 2.8430 25 6 1.8151 -3.6455 0.1276 26 1 -0.4850 0.8401 -0.0004 27 1 -0.1577 -1.4293 -1.5557 28 1 -1.2999 -3.5159 -2.1618 29 1 -0.4689 -5.6732 -1.3236 30 1 0.9961 -6.7521 0.4486 31 1 2.7177 -10.8941 1.1753 32 1 3.5551 -12.9918 2.2090 33 1 5.5708 -12.8854 3.6570 34 1 6.6766 -10.7188 4.0372 35 1 2.6832 -3.6840 0.7690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177802648.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:12 Heat of formation + Delta-G solvation = 59.666174 kcal Electronic energy + Delta-G solvation = -20167.196876 eV Core-core repulsion = 16902.678149 eV Total energy + Delta-G solvation = -3264.518727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42560 -41.13580 -39.06243 -36.34303 -35.45611 -34.85251 -33.54733 -32.00480 -31.78889 -30.07193 -27.30965 -26.19598 -24.49615 -24.23552 -22.89221 -22.23528 -20.31989 -19.54139 -18.67034 -17.56048 -17.40297 -17.13760 -16.86576 -16.53752 -16.31497 -15.98125 -15.33561 -15.15543 -14.98355 -14.68906 -14.12672 -14.04147 -13.58518 -13.12724 -12.98946 -12.90334 -12.81617 -12.59302 -12.37100 -12.19836 -11.98862 -11.64105 -11.40425 -11.05875 -10.96457 -10.90204 -10.59458 -9.95173 -9.43105 -8.84479 -8.64037 -6.38988 -0.62660 0.24557 0.37724 0.95479 1.04665 1.18730 1.36142 1.47298 1.51556 1.75349 2.20565 2.25471 2.71052 2.86370 2.93088 3.58364 3.70236 3.90948 3.98558 4.04893 4.13783 4.44402 4.54908 4.60078 4.74825 4.89399 5.05950 5.06516 5.07918 5.15300 5.16010 5.29224 5.62520 5.66638 5.79041 5.81151 6.03932 6.06641 6.28314 6.39890 6.64063 6.82072 6.88614 6.96322 7.03767 8.31549 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.002622 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.889640 B =10677.117835 C =11503.567631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.039 3.961 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.264 1.264 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.089 3.911 10 C -0.192 4.192 11 C -0.089 4.089 12 C -0.242 4.242 13 C 0.153 3.847 14 N -0.635 5.635 15 C 0.626 3.374 16 O -0.545 6.545 17 C -0.192 4.192 18 C -0.012 4.012 19 C 0.170 3.830 20 C -0.128 4.128 21 C -0.070 4.070 22 C -0.140 4.140 23 C 0.090 3.910 24 N -0.507 5.507 25 C -0.239 4.239 26 H 0.291 0.709 27 H 0.108 0.892 28 H 0.129 0.871 29 H 0.137 0.863 30 H 0.426 0.574 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 -24.476 5.085 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.182 1.182 6 H -0.189 1.189 7 C -0.532 4.532 8 H 0.081 0.919 9 C 0.086 3.914 10 C -0.212 4.212 11 C -0.108 4.108 12 C -0.263 4.263 13 C 0.060 3.940 14 N -0.280 5.280 15 C 0.414 3.586 16 O -0.424 6.424 17 C -0.197 4.197 18 C -0.015 4.015 19 C 0.037 3.963 20 C -0.147 4.147 21 C -0.096 4.096 22 C -0.159 4.159 23 C -0.069 4.069 24 N -0.216 5.216 25 C -0.261 4.261 26 H 0.101 0.899 27 H 0.126 0.874 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.265 0.735 31 H 0.180 0.820 32 H 0.201 0.799 33 H 0.200 0.800 34 H 0.203 0.797 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.646 -22.954 5.032 23.780 hybrid contribution -0.126 0.200 0.064 0.245 sum 3.519 -22.755 5.096 23.582 Atomic orbital electron populations 1.69838 1.08640 1.30730 1.35290 1.26689 0.95641 1.04177 0.91156 0.85273 0.78898 0.75765 0.79869 1.18681 1.18229 1.18875 1.19726 0.97565 0.92700 1.43245 0.91921 1.17816 0.92075 0.92166 0.89319 1.21364 0.99702 0.97835 1.02314 1.20870 0.98979 0.91924 0.99001 1.20488 1.00998 0.98446 1.06387 1.17474 0.96190 0.83255 0.97031 1.43027 1.06300 1.14906 1.63776 1.14886 0.82730 0.83050 0.77963 1.90927 1.56068 1.45269 1.50103 1.20103 1.02657 0.93773 1.03192 1.19096 0.96863 0.92071 0.93450 1.16654 0.93995 0.88362 0.97314 1.22424 1.00875 0.91321 1.00126 1.22112 0.95145 0.98996 0.93299 1.22878 0.95488 1.00099 0.97430 1.23380 0.99757 0.87370 0.96380 1.67609 1.11524 1.34340 1.08153 1.20969 1.04669 0.92421 1.08016 0.89858 0.87435 0.85313 0.84473 0.73511 0.81987 0.79902 0.80043 0.79691 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.90 10.94 21.82 0.24 -43.66 16 2 C 0.04 2.06 5.16 85.25 0.44 2.50 16 3 Si 0.98 40.63 29.59 68.60 2.03 42.66 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.50 -29.68 9.05 23.46 0.21 -29.47 16 8 H 0.06 3.73 7.90 -2.91 -0.02 3.71 16 9 C 0.09 5.21 5.57 -21.31 -0.12 5.09 16 10 C -0.19 -10.37 8.69 22.75 0.20 -10.18 16 11 C -0.09 -4.03 10.01 22.20 0.22 -3.81 16 12 C -0.24 -10.14 9.97 22.59 0.23 -9.92 16 13 C 0.15 7.07 6.25 38.13 0.24 7.31 16 14 N -0.64 -23.68 5.32 -310.41 -1.65 -25.34 16 15 C 0.63 25.69 7.38 85.49 0.63 26.33 16 16 O -0.55 -28.04 14.84 -4.27 -0.06 -28.11 16 17 C -0.19 -6.52 13.61 30.03 0.41 -6.11 16 18 C -0.01 -0.34 13.45 30.05 0.40 0.06 16 19 C 0.17 3.98 6.60 40.59 0.27 4.25 16 20 C -0.13 -1.78 9.81 22.66 0.22 -1.56 16 21 C -0.07 -0.52 10.16 22.44 0.23 -0.29 16 22 C -0.14 -1.00 10.11 22.45 0.23 -0.77 16 23 C 0.09 1.27 11.18 84.79 0.95 2.22 16 24 N -0.51 -12.24 10.28 -188.87 -1.94 -14.18 16 25 C -0.24 -13.31 8.39 22.86 0.19 -13.12 16 26 H 0.29 13.94 8.30 -92.71 -0.77 13.17 16 27 H 0.11 5.97 6.17 -2.91 -0.02 5.95 16 28 H 0.13 4.86 8.06 -2.91 -0.02 4.83 16 29 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.43 11.62 8.78 -92.71 -0.81 10.81 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.18 -0.08 8.06 -2.91 -0.02 -0.10 16 33 H 0.18 -0.16 8.06 -2.91 -0.02 -0.18 16 34 H 0.19 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.08 4.89 6.48 -2.91 -0.02 4.87 16 Total: -1.00 -78.63 323.65 3.89 -74.74 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.34 Total: 21.36 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.94 Total: -27.47 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -3.36 Total: -83.18 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.06 Total: -28.11 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -78.63 3.89 -74.74 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177802648.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.401 kcal (2) G-P(sol) polarization free energy of solvation -78.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds