Wall clock time and date at job start Tue Mar 31 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.37952 * 119.89049 * 335.56355 * 3 2 1 5 5 C 1.40817 * 119.03154 * 180.26838 * 4 3 2 6 6 N 1.34537 * 120.58359 * 179.72704 * 5 4 3 7 7 C 1.33020 * 120.00448 * 185.29287 * 6 5 4 8 8 O 1.21998 * 119.99861 * 55.74664 * 7 6 5 9 9 C 1.48219 * 120.00549 * 236.02313 * 7 6 5 10 10 C 1.39806 * 120.00967 * 359.44578 * 9 7 6 11 11 C 1.38358 * 120.37509 * 179.76698 * 10 9 7 12 12 C 1.37742 * 120.39100 * 0.50835 * 11 10 9 13 13 C 1.40742 * 120.01271 * 359.74813 * 12 11 10 14 14 C 1.41429 * 120.18397 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99949 * 34.67443 * 14 13 12 16 16 C 1.39931 * 120.00272 * 214.66894 * 14 13 12 17 17 N 1.30828 * 120.00341 * 355.68957 * 16 14 13 18 18 Si 1.86803 * 120.00135 * 175.68588 * 16 14 13 19 19 H 1.48502 * 109.47068 * 60.00529 * 18 16 14 20 20 H 1.48503 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47220 * 300.00110 * 18 16 14 22 22 C 1.38859 * 120.01716 * 179.72407 * 9 7 6 23 23 C 1.41434 * 118.83428 * 359.45732 * 5 4 3 24 24 C 1.35112 * 119.70401 * 0.26884 * 23 5 4 25 25 N 1.35629 * 120.97800 * 359.97438 * 24 23 5 26 26 H 0.96995 * 119.38435 * 180.02562 * 25 24 23 27 27 H 4.50519 * 14.04014 * 0.02562 * 4 2 1 28 28 H 1.07998 * 120.48479 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.81623 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.80841 * 180.25726 * 11 10 9 31 31 H 1.07998 * 119.99096 * 179.76460 * 12 11 10 32 32 H 0.97000 * 120.00801 * 179.97438 * 17 16 14 33 33 H 1.08007 * 120.19055 * 359.94769 * 22 9 7 34 34 H 1.07997 * 120.14955 * 180.29769 * 23 5 4 35 35 H 1.08005 * 119.50827 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2940 -1.0879 0.4948 5 6 4.7020 -1.0657 0.4913 6 7 5.4042 -2.1080 0.9713 7 6 6.7293 -2.0330 1.0601 8 8 7.2481 -1.1238 1.6868 9 6 7.5758 -3.0503 0.3927 10 6 6.9815 -4.0955 -0.3207 11 6 7.7644 -5.0465 -0.9506 12 6 9.1381 -4.9805 -0.8736 13 6 9.7536 -3.9383 -0.1554 14 6 11.1637 -3.8666 -0.0744 15 1 11.7693 -4.1778 -0.9127 16 6 11.7744 -3.3926 1.0920 17 7 11.0416 -2.9367 2.0753 18 14 13.6360 -3.4106 1.2452 19 1 14.2296 -2.5801 0.1667 20 1 14.0292 -2.8604 2.5674 21 1 14.1292 -4.8060 1.1238 22 6 8.9592 -2.9689 0.4804 23 6 5.3650 0.0692 -0.0310 24 6 4.6422 1.1061 -0.5085 25 7 3.2863 1.0764 -0.4958 26 1 2.7903 1.8334 -0.8448 27 1 -1.0500 -0.0010 -0.0001 28 1 2.7605 -1.9430 0.8828 29 1 5.9051 -4.1587 -0.3839 30 1 7.2957 -5.8478 -1.5027 31 1 9.7429 -5.7284 -1.3646 32 1 11.4648 -2.6084 2.8840 33 1 9.4220 -2.1649 1.0336 34 1 6.4442 0.1067 -0.0485 35 1 5.1517 1.9710 -0.9070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188666496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:10 Heat of formation + Delta-G solvation = 104.017894 kcal Electronic energy + Delta-G solvation = -21040.992349 eV Core-core repulsion = 17778.396857 eV Total energy + Delta-G solvation = -3262.595492 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.77002 -38.79124 -36.91820 -34.80369 -34.23989 -33.47497 -31.05738 -30.85998 -29.59815 -29.22824 -25.29706 -24.81109 -23.66910 -21.97208 -20.72305 -20.27106 -18.88459 -18.14552 -17.42488 -16.57122 -15.95341 -15.46370 -15.23522 -14.87079 -14.61836 -14.45986 -14.19121 -13.58834 -12.98074 -12.86542 -12.69971 -12.38846 -12.12675 -11.94092 -11.54136 -11.36086 -11.14050 -11.03601 -10.92039 -10.54918 -10.31766 -10.01455 -9.61176 -9.44726 -9.43479 -9.11311 -8.46859 -7.49367 -7.30006 -7.20201 -6.48498 -4.29877 0.45198 1.14401 1.84777 2.23165 2.68085 2.76619 2.98183 3.16313 3.18871 3.26887 3.49727 3.64708 3.99923 4.07769 4.47196 4.74803 4.88525 4.95496 5.11461 5.19142 5.52456 5.70216 5.74802 6.03269 6.22393 6.34140 6.58883 6.61834 6.67199 6.80961 6.85081 7.04163 7.18934 7.26915 7.44000 7.58270 7.89295 8.03227 8.11505 8.19289 8.37138 8.68280 9.00020 9.01726 9.11703 10.42626 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.003366 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.143881 B = 8317.195354 C = 8877.900654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.174 4.174 3 C 0.247 3.753 4 C -0.148 4.148 5 C 0.292 3.708 6 N -0.602 5.602 7 C 0.536 3.464 8 O -0.530 6.530 9 C -0.137 4.137 10 C -0.174 4.174 11 C -0.120 4.120 12 C -0.193 4.193 13 C 0.087 3.913 14 C -0.469 4.469 15 H 0.076 0.924 16 C 0.068 3.932 17 N -0.808 5.808 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.084 4.084 23 C -0.235 4.235 24 C 0.132 3.868 25 N -0.590 5.590 26 H 0.418 0.582 27 H 0.233 0.767 28 H 0.155 0.845 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.280 0.720 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.683 10.481 -6.149 22.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 C 0.137 3.863 4 C -0.175 4.175 5 C 0.130 3.870 6 N -0.335 5.335 7 C 0.328 3.672 8 O -0.409 6.409 9 C -0.140 4.140 10 C -0.193 4.193 11 C -0.138 4.138 12 C -0.213 4.213 13 C 0.085 3.915 14 C -0.500 4.500 15 H 0.094 0.906 16 C -0.147 4.147 17 N -0.434 5.434 18 Si 0.741 3.259 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.192 1.192 22 C -0.104 4.104 23 C -0.262 4.262 24 C 0.003 3.997 25 N -0.196 5.196 26 H 0.254 0.746 27 H 0.250 0.750 28 H 0.172 0.828 29 H 0.118 0.882 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -18.248 10.131 -5.184 21.506 hybrid contribution 0.880 0.576 -0.103 1.056 sum -17.368 10.707 -5.287 21.077 Atomic orbital electron populations 1.25069 0.95694 0.95951 0.96738 1.19220 0.90875 1.03942 1.03409 1.15682 0.85156 0.88595 0.96893 1.20969 0.92453 0.98296 1.05756 1.18631 0.92204 0.86812 0.89319 1.68717 1.09257 1.26578 1.28989 1.19876 0.85418 0.83588 0.78326 1.90769 1.76949 1.34723 1.38506 1.19749 0.94129 0.97484 1.02675 1.20624 0.97821 0.97360 1.03530 1.20532 0.94117 0.98364 1.00823 1.21273 0.93536 0.99373 1.07104 1.17631 0.93695 0.89525 0.90612 1.19418 0.91354 1.39018 1.00244 0.90601 1.25891 1.00568 0.92818 0.95429 1.69737 1.37219 1.31224 1.05256 0.86258 0.82285 0.79342 0.78047 1.19124 1.20452 1.19177 1.21961 0.90257 0.99188 0.99038 1.21890 1.02379 0.95153 1.06765 1.21652 0.81354 1.00065 0.96643 1.41054 1.06053 1.17826 1.54702 0.74604 0.75009 0.82767 0.88157 0.88935 0.88621 0.90897 0.84038 0.83010 0.81206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.57 19.25 29.55 0.57 0.00 16 2 C -0.17 -1.31 13.36 -38.83 -0.52 -1.82 16 3 C 0.25 2.34 6.66 -83.92 -0.56 1.78 16 4 C -0.15 -1.94 9.73 -38.71 -0.38 -2.32 16 5 C 0.29 5.04 6.54 -84.49 -0.55 4.49 16 6 N -0.60 -13.29 9.59 -11.03 -0.11 -13.40 16 7 C 0.54 13.70 6.25 -12.94 -0.08 13.62 16 8 O -0.53 -14.58 15.63 4.92 0.08 -14.50 16 9 C -0.14 -3.69 5.87 -104.98 -0.62 -4.30 16 10 C -0.17 -4.28 9.59 -38.95 -0.37 -4.66 16 11 C -0.12 -2.85 10.01 -39.72 -0.40 -3.25 16 12 C -0.19 -4.95 9.78 -38.82 -0.38 -5.33 16 13 C 0.09 2.48 5.55 -106.87 -0.59 1.89 16 14 C -0.47 -13.13 9.04 -37.73 -0.34 -13.47 16 15 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 16 C 0.07 1.84 5.42 -17.35 -0.09 1.75 16 17 N -0.81 -23.00 10.60 55.55 0.59 -22.41 16 18 Si 0.92 20.05 29.56 -169.99 -5.03 15.03 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 C -0.08 -2.44 8.21 -38.49 -0.32 -2.76 16 23 C -0.23 -3.51 8.91 -39.48 -0.35 -3.86 16 24 C 0.13 1.18 11.15 -16.99 -0.19 0.99 16 25 N -0.59 -4.21 5.28 -10.61 -0.06 -4.26 16 26 H 0.42 1.35 8.76 -40.82 -0.36 1.00 16 27 H 0.23 0.18 7.80 -54.09 -0.42 -0.24 16 28 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 29 H 0.10 2.29 7.53 -52.48 -0.40 1.90 16 30 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 32 H 0.28 7.39 8.30 -40.82 -0.34 7.05 16 33 H 0.14 4.39 5.72 -52.48 -0.30 4.09 16 34 H 0.15 2.69 6.41 -52.49 -0.34 2.36 16 35 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 LS Contribution 321.90 15.07 4.85 4.85 Total: -1.00 -37.37 321.90 -7.89 -45.26 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -3.05 Total: 6.67 kcal Atomic # 6 Polarization: -12.07 SS G_CDS: -5.17 Total: -17.24 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.43 Total: -40.07 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.08 Total: -14.50 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.03 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -37.37 -7.89 -45.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.281 kcal (2) G-P(sol) polarization free energy of solvation -37.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds