Wall clock time and date at job start Tue Mar 31 2020 06:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.37952 * 119.89049 * 335.56355 * 3 2 1 5 5 C 1.40817 * 119.03154 * 180.26838 * 4 3 2 6 6 N 1.34537 * 120.58359 * 179.72704 * 5 4 3 7 7 C 1.33020 * 120.00448 * 185.29287 * 6 5 4 8 8 O 1.21998 * 119.99861 * 55.74664 * 7 6 5 9 9 C 1.48219 * 120.00549 * 236.02313 * 7 6 5 10 10 C 1.39806 * 120.00967 * 359.44578 * 9 7 6 11 11 C 1.38358 * 120.37509 * 179.76698 * 10 9 7 12 12 C 1.37742 * 120.39100 * 0.50835 * 11 10 9 13 13 C 1.40742 * 120.01271 * 359.74813 * 12 11 10 14 14 C 1.41429 * 120.18397 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99949 * 34.67443 * 14 13 12 16 16 C 1.39931 * 120.00272 * 214.66894 * 14 13 12 17 17 N 1.30828 * 120.00341 * 355.68957 * 16 14 13 18 18 Si 1.86803 * 120.00135 * 175.68588 * 16 14 13 19 19 H 1.48502 * 109.47068 * 60.00529 * 18 16 14 20 20 H 1.48503 * 109.47024 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47220 * 300.00110 * 18 16 14 22 22 C 1.38859 * 120.01716 * 179.72407 * 9 7 6 23 23 C 1.41434 * 118.83428 * 359.45732 * 5 4 3 24 24 C 1.35112 * 119.70401 * 0.26884 * 23 5 4 25 25 N 1.35629 * 120.97800 * 359.97438 * 24 23 5 26 26 H 0.96995 * 119.38435 * 180.02562 * 25 24 23 27 27 H 4.50519 * 14.04014 * 0.02562 * 4 2 1 28 28 H 1.07998 * 120.48479 * 0.02562 * 4 3 2 29 29 H 1.08005 * 119.81623 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.80841 * 180.25726 * 11 10 9 31 31 H 1.07998 * 119.99096 * 179.76460 * 12 11 10 32 32 H 0.97000 * 120.00801 * 179.97438 * 17 16 14 33 33 H 1.08007 * 120.19055 * 359.94769 * 22 9 7 34 34 H 1.07997 * 120.14955 * 180.29769 * 23 5 4 35 35 H 1.08005 * 119.50827 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.2940 -1.0879 0.4948 5 6 4.7020 -1.0657 0.4913 6 7 5.4042 -2.1080 0.9713 7 6 6.7293 -2.0330 1.0601 8 8 7.2481 -1.1238 1.6868 9 6 7.5758 -3.0503 0.3927 10 6 6.9815 -4.0955 -0.3207 11 6 7.7644 -5.0465 -0.9506 12 6 9.1381 -4.9805 -0.8736 13 6 9.7536 -3.9383 -0.1554 14 6 11.1637 -3.8666 -0.0744 15 1 11.7693 -4.1778 -0.9127 16 6 11.7744 -3.3926 1.0920 17 7 11.0416 -2.9367 2.0753 18 14 13.6360 -3.4106 1.2452 19 1 14.2296 -2.5801 0.1667 20 1 14.0292 -2.8604 2.5674 21 1 14.1292 -4.8060 1.1238 22 6 8.9592 -2.9689 0.4804 23 6 5.3650 0.0692 -0.0310 24 6 4.6422 1.1061 -0.5085 25 7 3.2863 1.0764 -0.4958 26 1 2.7903 1.8334 -0.8448 27 1 -1.0500 -0.0010 -0.0001 28 1 2.7605 -1.9430 0.8828 29 1 5.9051 -4.1587 -0.3839 30 1 7.2957 -5.8478 -1.5027 31 1 9.7429 -5.7284 -1.3646 32 1 11.4648 -2.6084 2.8840 33 1 9.4220 -2.1649 1.0336 34 1 6.4442 0.1067 -0.0485 35 1 5.1517 1.9710 -0.9070 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188666496.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:10 Heat of formation + Delta-G solvation = 76.403797 kcal Electronic energy + Delta-G solvation = -21042.189786 eV Core-core repulsion = 17778.396857 eV Total energy + Delta-G solvation = -3263.792929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.85357 -40.45378 -38.81986 -36.11106 -35.50279 -34.98064 -32.49004 -31.84978 -31.35414 -31.16509 -27.24029 -26.08874 -24.83141 -23.47989 -22.71628 -21.41853 -20.32450 -19.35688 -18.83542 -17.85886 -17.41845 -17.24330 -16.51377 -16.31749 -16.20692 -15.70633 -15.49409 -15.07735 -14.80068 -14.64851 -14.32422 -14.04262 -13.51681 -13.24184 -12.86861 -12.76781 -12.67745 -12.51100 -12.35157 -12.17689 -11.96818 -11.85489 -11.54836 -11.22218 -11.08034 -10.28100 -10.11796 -9.48412 -9.27407 -8.61516 -8.49278 -6.43164 -0.52874 0.04016 0.43244 1.02482 1.23055 1.35800 1.47322 1.51054 1.74737 2.01240 2.15336 2.23062 2.67507 2.86641 3.03872 3.38401 3.64964 3.76374 3.89906 4.05609 4.33328 4.39077 4.47928 4.67365 4.81913 4.85132 5.02056 5.08528 5.15259 5.24124 5.36295 5.53550 5.57780 5.64588 5.89550 6.01655 6.09304 6.12248 6.28652 6.35115 6.61336 6.62685 6.91525 6.96947 7.49103 8.43137 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028243 B = 0.003366 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.143881 B = 8317.195354 C = 8877.900654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.244 4.244 3 C 0.297 3.703 4 C -0.191 4.191 5 C 0.295 3.705 6 N -0.674 5.674 7 C 0.539 3.461 8 O -0.585 6.585 9 C -0.152 4.152 10 C -0.168 4.168 11 C -0.112 4.112 12 C -0.198 4.198 13 C 0.056 3.944 14 C -0.501 4.501 15 H 0.085 0.915 16 C 0.017 3.983 17 N -0.851 5.851 18 Si 0.997 3.003 19 H -0.255 1.255 20 H -0.275 1.275 21 H -0.255 1.255 22 C -0.120 4.120 23 C -0.294 4.294 24 C 0.195 3.805 25 N -0.553 5.553 26 H 0.448 0.552 27 H 0.277 0.723 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.138 0.862 31 H 0.117 0.883 32 H 0.281 0.719 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.612 12.250 -8.491 27.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.245 4.245 3 C 0.184 3.816 4 C -0.217 4.217 5 C 0.143 3.857 6 N -0.415 5.415 7 C 0.332 3.668 8 O -0.468 6.468 9 C -0.156 4.156 10 C -0.187 4.187 11 C -0.130 4.130 12 C -0.217 4.217 13 C 0.055 3.945 14 C -0.532 4.532 15 H 0.103 0.897 16 C -0.194 4.194 17 N -0.478 5.478 18 Si 0.817 3.183 19 H -0.179 1.179 20 H -0.199 1.199 21 H -0.179 1.179 22 C -0.141 4.141 23 C -0.321 4.321 24 C 0.063 3.937 25 N -0.158 5.158 26 H 0.290 0.710 27 H 0.293 0.707 28 H 0.172 0.828 29 H 0.136 0.864 30 H 0.156 0.844 31 H 0.135 0.865 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -22.302 11.978 -7.602 26.431 hybrid contribution 1.398 0.389 0.443 1.517 sum -20.904 12.366 -7.159 25.321 Atomic orbital electron populations 1.26155 0.96237 0.91736 0.91435 1.19045 0.90542 1.07631 1.07305 1.15776 0.86654 0.86969 0.92191 1.20891 0.90587 1.00603 1.09619 1.19192 0.93783 0.86118 0.86566 1.68464 1.06504 1.29923 1.36606 1.19876 0.86973 0.82473 0.77494 1.90674 1.78145 1.36957 1.41069 1.20214 0.93907 0.98752 1.02684 1.20889 0.98855 0.96499 1.02466 1.20970 0.93404 0.98764 0.99893 1.21557 0.94756 0.98995 1.06406 1.18037 0.94496 0.90416 0.91599 1.19766 0.91671 1.40488 1.01244 0.89681 1.26991 1.06267 0.91627 0.94502 1.69931 1.39590 1.32370 1.05953 0.85047 0.75012 0.79954 0.78329 1.17885 1.19938 1.17886 1.21739 0.91547 0.99529 1.01277 1.21674 1.01359 0.97317 1.11768 1.22264 0.81539 0.98898 0.90998 1.41417 1.05840 1.17821 1.50681 0.71033 0.70691 0.82817 0.86373 0.84402 0.86488 0.90850 0.87518 0.86792 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.12 19.25 74.32 1.43 1.31 16 2 C -0.24 -2.47 13.36 30.02 0.40 -2.07 16 3 C 0.30 4.68 6.66 39.58 0.26 4.95 16 4 C -0.19 -5.00 9.73 22.83 0.22 -4.78 16 5 C 0.29 10.87 6.54 40.15 0.26 11.13 16 6 N -0.67 -32.71 9.59 -307.87 -2.95 -35.66 16 7 C 0.54 30.73 6.25 87.17 0.54 31.27 16 8 O -0.59 -36.31 15.63 -5.31 -0.08 -36.39 16 9 C -0.15 -8.95 5.87 -20.10 -0.12 -9.07 16 10 C -0.17 -8.64 9.59 22.68 0.22 -8.42 16 11 C -0.11 -5.37 10.01 22.18 0.22 -5.14 16 12 C -0.20 -10.40 9.78 22.76 0.22 -10.17 16 13 C 0.06 3.42 5.55 -21.32 -0.12 3.30 16 14 C -0.50 -29.57 9.04 23.47 0.21 -29.36 16 15 H 0.09 4.66 7.85 -2.91 -0.02 4.64 16 16 C 0.02 0.97 5.42 85.25 0.46 1.43 16 17 N -0.85 -52.38 10.60 21.82 0.23 -52.15 16 18 Si 1.00 42.76 29.56 68.60 2.03 44.78 16 19 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 20 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 22 C -0.12 -7.66 8.21 22.98 0.19 -7.47 16 23 C -0.29 -9.21 8.91 22.34 0.20 -9.01 16 24 C 0.20 2.87 11.15 83.39 0.93 3.80 16 25 N -0.55 -5.23 5.28 -187.49 -0.99 -6.22 16 26 H 0.45 -0.14 8.76 -92.71 -0.81 -0.95 16 27 H 0.28 -1.86 7.80 -4.42 -0.03 -1.90 16 28 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 29 H 0.12 5.60 7.53 -2.91 -0.02 5.58 16 30 H 0.14 5.27 8.06 -2.91 -0.02 5.25 16 31 H 0.12 5.52 8.06 -2.91 -0.02 5.50 16 32 H 0.28 16.03 8.30 -92.71 -0.77 15.26 16 33 H 0.11 7.44 5.72 -2.91 -0.02 7.43 16 34 H 0.11 4.56 6.41 -2.91 -0.02 4.54 16 35 H 0.23 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -97.88 321.90 4.11 -93.78 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 0.33 Total: 20.16 kcal Atomic # 6 Polarization: -33.84 SS G_CDS: 5.54 Total: -28.30 kcal Atomic # 7 Polarization: -90.32 SS G_CDS: -3.71 Total: -94.04 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -0.08 Total: -36.39 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.78 kcal Total: -97.88 4.11 -93.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188666496.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.180 kcal (2) G-P(sol) polarization free energy of solvation -97.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds