Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47157 * 273.89607 * 3 2 1 5 5 N 1.46504 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00203 * 270.00319 * 5 4 3 7 7 C 1.50701 * 109.47191 * 270.00019 * 6 5 4 8 8 H 1.07997 * 119.99856 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00294 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99832 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47348 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46955 * 120.00391 * 11 9 7 14 14 H 1.48500 * 109.46979 * 240.00009 * 11 9 7 15 15 C 1.34777 * 119.99567 * 89.99962 * 5 4 3 16 16 O 1.21524 * 119.99539 * 179.97438 * 15 5 4 17 17 O 1.34667 * 120.00404 * 0.02562 * 15 5 4 18 18 C 1.35971 * 116.99906 * 175.09186 * 17 15 5 19 19 C 1.38710 * 120.02867 * 256.79660 * 18 17 15 20 20 C 1.38148 * 119.96793 * 179.81730 * 19 18 17 21 21 C 1.38458 * 120.02984 * 0.43705 * 20 19 18 22 22 F 1.35101 * 119.96700 * 179.77139 * 21 20 19 23 23 C 1.38459 * 120.05907 * 359.79249 * 21 20 19 24 24 C 1.38147 * 120.02971 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47047 * 153.89833 * 3 2 1 26 26 H 1.08996 * 109.47196 * 33.90133 * 3 2 1 27 27 H 1.09003 * 109.46932 * 60.00640 * 4 3 2 28 28 H 1.08996 * 109.47497 * 300.00342 * 4 3 2 29 29 H 1.09008 * 109.47144 * 29.99868 * 6 5 4 30 30 H 1.09000 * 109.47716 * 149.99984 * 6 5 4 31 31 H 0.96997 * 119.99683 * 180.02562 * 10 9 7 32 32 H 1.07995 * 120.01276 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.97703 * 180.20796 * 20 19 18 34 34 H 1.07996 * 119.98366 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.01474 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0971 1.4392 5 7 4.5831 -0.0959 1.4392 6 6 5.3167 -1.3609 1.3528 7 6 5.5683 -1.8916 2.7406 8 1 5.2172 -1.3412 3.6010 9 6 6.2467 -3.0796 2.9121 10 7 6.6747 -3.7495 1.8643 11 14 6.5591 -3.7369 4.6324 12 1 5.9823 -2.8022 5.6318 13 1 5.9223 -5.0708 4.7758 14 1 8.0219 -3.8601 4.8571 15 6 5.2559 1.0693 1.5187 16 8 6.4711 1.0703 1.5192 17 8 4.5815 2.2322 1.5986 18 6 5.3173 3.3612 1.7795 19 6 5.3770 3.9579 3.0303 20 6 6.1280 5.1028 3.2136 21 6 6.8135 5.6599 2.1474 22 9 7.5438 6.7822 2.3270 23 6 6.7509 5.0680 0.8972 24 6 6.0037 3.9209 0.7121 25 1 2.9709 0.9237 -0.4521 26 1 2.9717 -0.8521 -0.5732 27 1 2.7552 -1.0202 1.8913 28 1 2.7543 0.7556 2.0123 29 1 4.7282 -2.0844 0.7883 30 1 6.2690 -1.1951 0.8491 31 1 7.1516 -4.5855 1.9849 32 1 4.8394 3.5256 3.8612 33 1 6.1773 5.5656 4.1881 34 1 7.2857 5.5038 0.0664 35 1 5.9547 3.4597 -0.2633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195026033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -60.005672 kcal Electronic energy + Delta-G solvation = -22354.869890 eV Core-core repulsion = 18654.392577 eV Total energy + Delta-G solvation = -3700.477312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.00928 -40.94602 -38.69654 -37.10706 -36.41431 -35.29373 -32.92221 -31.34558 -30.98383 -29.75198 -27.44252 -24.30569 -23.83438 -23.31420 -22.27835 -20.19422 -18.04120 -17.84476 -17.44742 -17.18549 -16.92760 -16.51079 -15.69223 -15.42274 -15.05444 -14.75744 -14.62361 -14.09611 -13.89721 -13.74062 -13.61880 -13.18742 -12.94635 -12.64925 -12.42058 -12.37619 -12.05423 -11.84913 -11.54915 -11.37739 -11.04199 -10.91725 -10.73889 -10.61175 -10.31005 -9.96381 -9.79403 -9.27852 -8.61879 -8.56304 -8.10200 -6.18417 -4.23585 0.82807 1.07279 2.55582 2.77813 2.84523 3.23721 3.27103 3.32508 3.36540 3.52599 3.98630 4.11430 4.33151 4.50428 4.60269 4.70073 5.03929 5.08804 5.14713 5.17588 5.21671 5.44830 5.51152 5.71760 5.82345 5.94545 5.97729 6.07284 6.21404 6.38888 6.77425 6.93157 7.20348 7.24757 7.59980 7.77345 7.99659 8.03533 8.73366 8.89610 9.42656 10.89806 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004904 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.730385 B = 5707.963101 C = 7550.395053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.220 3.780 3 C -0.048 4.048 4 C 0.120 3.880 5 N -0.570 5.570 6 C 0.257 3.743 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.065 3.935 10 N -0.892 5.892 11 Si 0.899 3.101 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.282 1.282 15 C 0.637 3.363 16 O -0.544 6.544 17 O -0.315 6.315 18 C 0.108 3.892 19 C -0.091 4.091 20 C -0.140 4.140 21 C 0.093 3.907 22 F -0.140 7.140 23 C -0.140 4.140 24 C -0.088 4.088 25 H 0.108 0.892 26 H 0.116 0.884 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.265 0.735 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.278 14.372 -2.112 14.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.098 4.098 3 C -0.090 4.090 4 C -0.005 4.005 5 N -0.308 5.308 6 C 0.140 3.860 7 C -0.573 4.573 8 H 0.079 0.921 9 C -0.138 4.138 10 N -0.530 5.530 11 Si 0.727 3.273 12 H -0.197 1.197 13 H -0.209 1.209 14 H -0.208 1.208 15 C 0.390 3.610 16 O -0.430 6.430 17 O -0.229 6.229 18 C 0.065 3.935 19 C -0.109 4.109 20 C -0.159 4.159 21 C 0.074 3.926 22 F -0.119 7.119 23 C -0.159 4.159 24 C -0.107 4.107 25 H 0.126 0.874 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.158 0.842 35 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.424 14.246 -2.174 15.075 hybrid contribution 0.864 -0.312 0.926 1.304 sum -3.560 13.934 -1.247 14.436 Atomic orbital electron populations 1.81200 1.13042 1.09484 1.08652 1.29041 0.95041 0.92682 0.93075 1.19844 0.81476 1.06232 1.01436 1.21339 0.80958 1.04779 0.93463 1.47319 1.05524 1.04491 1.73431 1.19533 0.92545 0.75785 0.98133 1.21443 1.37117 1.06355 0.92383 0.92087 1.24900 0.95069 0.96515 0.97316 1.69921 1.37997 1.15960 1.29165 0.86423 0.78166 0.78671 0.84070 1.19736 1.20862 1.20811 1.18434 0.84417 0.80344 0.77783 1.91034 1.11762 1.85455 1.54728 1.84293 1.38998 1.13557 1.86039 1.18265 0.95715 0.86392 0.93148 1.21081 0.98057 0.95636 0.96159 1.20959 0.98765 0.97284 0.98922 1.17710 0.94942 0.85172 0.94786 1.91496 1.75313 1.49000 1.96063 1.20970 1.01515 0.96968 0.96421 1.21211 0.94800 0.95092 0.99595 0.87368 0.86595 0.88446 0.89921 0.93634 0.93151 0.92544 0.84069 0.84074 0.84156 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.67 18.54 42.15 0.78 -5.89 16 2 C 0.22 2.71 15.43 -20.76 -0.32 2.39 16 3 C -0.05 -0.52 6.03 -29.52 -0.18 -0.69 16 4 C 0.12 1.63 5.37 -4.04 -0.02 1.61 16 5 N -0.57 -10.36 2.46 -180.85 -0.44 -10.80 16 6 C 0.26 5.83 5.16 -5.20 -0.03 5.80 16 7 C -0.53 -13.78 9.39 -34.44 -0.32 -14.11 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.61 13.29 55.43 0.74 -23.87 16 11 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 12 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.64 12.03 8.27 54.06 0.45 12.47 16 16 O -0.54 -12.44 15.46 -19.29 -0.30 -12.73 16 17 O -0.32 -4.87 8.85 -24.81 -0.22 -5.09 16 18 C 0.11 1.54 5.14 -39.24 -0.20 1.34 16 19 C -0.09 -1.14 9.99 -39.44 -0.39 -1.53 16 20 C -0.14 -1.58 10.02 -39.53 -0.40 -1.97 16 21 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 22 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 23 C -0.14 -1.59 10.02 -39.53 -0.40 -1.99 16 24 C -0.09 -1.13 9.57 -39.44 -0.38 -1.51 16 25 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.10 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.08 1.02 7.37 -51.93 -0.38 0.64 16 29 H 0.05 1.01 8.07 -51.92 -0.42 0.59 16 30 H 0.05 1.30 7.42 -51.93 -0.39 0.91 16 31 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -31.19 329.43 -5.72 -36.92 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.69 Total: -1.77 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.57 Total: 4.25 kcal Atomic # 7 Polarization: -41.64 SS G_CDS: 1.07 Total: -40.57 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.52 Total: -17.82 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.19 -5.72 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195026033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.088 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds