Wall clock time and date at job start Tue Mar 31 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.52999 * 109.47157 * 273.89607 * 3 2 1 5 5 N 1.46504 * 109.47195 * 180.02562 * 4 3 2 6 6 C 1.46493 * 120.00203 * 270.00319 * 5 4 3 7 7 C 1.50701 * 109.47191 * 270.00019 * 6 5 4 8 8 H 1.07997 * 119.99856 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00294 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99832 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00051 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47348 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.46955 * 120.00391 * 11 9 7 14 14 H 1.48500 * 109.46979 * 240.00009 * 11 9 7 15 15 C 1.34777 * 119.99567 * 89.99962 * 5 4 3 16 16 O 1.21524 * 119.99539 * 179.97438 * 15 5 4 17 17 O 1.34667 * 120.00404 * 0.02562 * 15 5 4 18 18 C 1.35971 * 116.99906 * 175.09186 * 17 15 5 19 19 C 1.38710 * 120.02867 * 256.79660 * 18 17 15 20 20 C 1.38148 * 119.96793 * 179.81730 * 19 18 17 21 21 C 1.38458 * 120.02984 * 0.43705 * 20 19 18 22 22 F 1.35101 * 119.96700 * 179.77139 * 21 20 19 23 23 C 1.38459 * 120.05907 * 359.79249 * 21 20 19 24 24 C 1.38147 * 120.02971 * 0.02562 * 23 21 20 25 25 H 1.08997 * 109.47047 * 153.89833 * 3 2 1 26 26 H 1.08996 * 109.47196 * 33.90133 * 3 2 1 27 27 H 1.09003 * 109.46932 * 60.00640 * 4 3 2 28 28 H 1.08996 * 109.47497 * 300.00342 * 4 3 2 29 29 H 1.09008 * 109.47144 * 29.99868 * 6 5 4 30 30 H 1.09000 * 109.47716 * 149.99984 * 6 5 4 31 31 H 0.96997 * 119.99683 * 180.02562 * 10 9 7 32 32 H 1.07995 * 120.01276 * 0.02562 * 19 18 17 33 33 H 1.07999 * 119.97703 * 180.20796 * 20 19 18 34 34 H 1.07996 * 119.98366 * 179.97438 * 23 21 20 35 35 H 1.07999 * 120.01474 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1181 -0.0971 1.4392 5 7 4.5831 -0.0959 1.4392 6 6 5.3167 -1.3609 1.3528 7 6 5.5683 -1.8916 2.7406 8 1 5.2172 -1.3412 3.6010 9 6 6.2467 -3.0796 2.9121 10 7 6.6747 -3.7495 1.8643 11 14 6.5591 -3.7369 4.6324 12 1 5.9823 -2.8022 5.6318 13 1 5.9223 -5.0708 4.7758 14 1 8.0219 -3.8601 4.8571 15 6 5.2559 1.0693 1.5187 16 8 6.4711 1.0703 1.5192 17 8 4.5815 2.2322 1.5986 18 6 5.3173 3.3612 1.7795 19 6 5.3770 3.9579 3.0303 20 6 6.1280 5.1028 3.2136 21 6 6.8135 5.6599 2.1474 22 9 7.5438 6.7822 2.3270 23 6 6.7509 5.0680 0.8972 24 6 6.0037 3.9209 0.7121 25 1 2.9709 0.9237 -0.4521 26 1 2.9717 -0.8521 -0.5732 27 1 2.7552 -1.0202 1.8913 28 1 2.7543 0.7556 2.0123 29 1 4.7282 -2.0844 0.7883 30 1 6.2690 -1.1951 0.8491 31 1 7.1516 -4.5855 1.9849 32 1 4.8394 3.5256 3.8612 33 1 6.1773 5.5656 4.1881 34 1 7.2857 5.5038 0.0664 35 1 5.9547 3.4597 -0.2633 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195026033.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:03 Heat of formation + Delta-G solvation = -76.646443 kcal Electronic energy + Delta-G solvation = -22355.591488 eV Core-core repulsion = 18654.392577 eV Total energy + Delta-G solvation = -3701.198910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.94595 -42.22441 -39.86399 -38.24733 -37.65255 -36.72865 -34.81801 -32.28558 -32.24003 -30.85409 -29.15264 -25.61239 -25.38178 -24.25908 -23.53531 -21.50886 -19.28663 -18.96843 -18.64508 -18.49843 -18.27191 -17.94260 -16.89059 -16.62054 -16.34648 -16.17706 -15.68802 -15.32684 -15.17729 -14.83024 -14.62100 -14.41867 -14.22486 -13.98432 -13.68131 -13.58771 -13.23064 -13.15151 -12.98795 -12.73195 -12.67744 -12.53987 -12.18765 -11.98200 -11.75736 -11.64944 -11.44863 -10.58327 -10.19934 -9.72007 -9.60277 -8.18987 -6.30416 -0.21193 0.15359 1.26488 1.41920 1.45428 1.55415 1.67168 1.84481 1.91975 2.41723 2.48895 2.91793 3.14480 3.18336 3.35241 3.70408 3.80972 4.06032 4.11773 4.14152 4.28465 4.41711 4.57036 4.80484 4.84307 5.01061 5.01918 5.03302 5.09481 5.24028 5.26020 5.43058 5.53004 5.79603 5.88776 6.08369 6.49786 6.61308 6.77256 7.32621 7.46912 8.88343 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.004904 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.730385 B = 5707.963101 C = 7550.395053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.247 3.753 3 C -0.035 4.035 4 C 0.117 3.883 5 N -0.569 5.569 6 C 0.272 3.728 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.017 3.983 10 N -0.922 5.922 11 Si 0.957 3.043 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.285 1.285 15 C 0.640 3.360 16 O -0.591 6.591 17 O -0.298 6.298 18 C 0.071 3.929 19 C -0.096 4.096 20 C -0.137 4.137 21 C 0.090 3.910 22 F -0.139 7.139 23 C -0.138 4.138 24 C -0.094 4.094 25 H 0.129 0.871 26 H 0.128 0.872 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.015 0.985 31 H 0.267 0.733 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.663 15.449 -1.563 15.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.167 5.167 2 C -0.070 4.070 3 C -0.076 4.076 4 C -0.007 4.007 5 N -0.306 5.306 6 C 0.153 3.847 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.183 4.183 10 N -0.562 5.562 11 Si 0.782 3.218 12 H -0.193 1.193 13 H -0.199 1.199 14 H -0.211 1.211 15 C 0.395 3.605 16 O -0.479 6.479 17 O -0.210 6.210 18 C 0.028 3.972 19 C -0.114 4.114 20 C -0.156 4.156 21 C 0.070 3.930 22 F -0.118 7.118 23 C -0.157 4.157 24 C -0.113 4.113 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.113 0.887 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.033 0.967 31 H 0.076 0.924 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.182 0.818 35 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.864 15.353 -1.624 16.187 hybrid contribution 1.021 -0.517 0.758 1.373 sum -3.843 14.836 -0.866 15.350 Atomic orbital electron populations 1.81238 1.14356 1.11144 1.09984 1.29101 0.94914 0.91228 0.91751 1.19775 0.80217 1.07905 0.99713 1.21529 0.78080 1.05449 0.95621 1.47082 1.07136 1.03227 1.73183 1.19045 0.91676 0.77619 0.96340 1.21749 1.36730 1.06311 0.93514 0.92740 1.25641 0.95046 0.96995 1.00590 1.70008 1.38859 1.16421 1.30898 0.85526 0.77696 0.78407 0.80138 1.19334 1.19855 1.21116 1.18495 0.83870 0.81245 0.76940 1.90997 1.13913 1.86377 1.56662 1.84315 1.38200 1.12867 1.85650 1.18682 0.97668 0.86250 0.94591 1.21277 0.98217 0.96026 0.95879 1.21231 0.97681 0.96646 1.00005 1.17898 0.94764 0.85124 0.95181 1.91503 1.75274 1.48935 1.96073 1.21223 1.00936 0.96349 0.97198 1.21367 0.94690 0.95552 0.99685 0.85281 0.85417 0.88665 0.88389 0.92949 0.96724 0.92421 0.82953 0.81504 0.81789 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.05 18.54 20.01 0.37 -13.68 16 2 C 0.25 5.67 15.43 89.44 1.38 7.05 16 3 C -0.04 -0.67 6.03 28.79 0.17 -0.50 16 4 C 0.12 3.00 5.37 86.38 0.46 3.47 16 5 N -0.57 -20.42 2.46 -956.48 -2.35 -22.77 16 6 C 0.27 12.47 5.16 85.63 0.44 12.91 16 7 C -0.54 -28.20 9.39 25.60 0.24 -27.96 16 8 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 9 C 0.02 0.91 5.46 84.65 0.46 1.37 16 10 N -0.92 -51.26 13.29 21.45 0.28 -50.98 16 11 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 12 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 13 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 14 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 15 C 0.64 24.02 8.27 129.79 1.07 25.09 16 16 O -0.59 -27.40 15.46 19.76 0.31 -27.10 16 17 O -0.30 -8.90 8.85 0.00 0.00 -8.90 16 18 C 0.07 1.95 5.14 22.49 0.12 2.07 16 19 C -0.10 -2.26 9.99 22.36 0.22 -2.04 16 20 C -0.14 -2.80 10.02 22.30 0.22 -2.57 16 21 C 0.09 1.94 7.30 22.37 0.16 2.10 16 22 F -0.14 -3.01 17.27 44.97 0.78 -2.23 16 23 C -0.14 -2.91 10.02 22.30 0.22 -2.68 16 24 C -0.09 -2.31 9.57 22.36 0.21 -2.10 16 25 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 26 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 27 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 28 H 0.10 2.23 7.37 -2.39 -0.02 2.21 16 29 H 0.05 2.32 8.07 -2.38 -0.02 2.30 16 30 H 0.01 0.78 7.42 -2.39 -0.02 0.76 16 31 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 33 H 0.17 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.15 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -67.35 329.43 7.93 -59.42 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: 1.12 Total: 5.78 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 5.40 Total: 16.20 kcal Atomic # 7 Polarization: -85.73 SS G_CDS: -1.69 Total: -87.42 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: 0.31 Total: -36.00 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.78 Total: -2.23 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Total: -67.35 7.93 -59.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195026033.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.227 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds