Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47300 * 2 1 4 4 C 1.46500 * 120.00298 * 270.00176 * 3 2 1 5 5 C 1.50696 * 109.47189 * 269.99842 * 4 3 2 6 6 H 1.07998 * 120.00410 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99815 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00123 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46805 * 90.00469 * 9 7 5 11 11 H 1.48491 * 109.47405 * 210.00338 * 9 7 5 12 12 H 1.48492 * 109.47196 * 330.00794 * 9 7 5 13 13 C 1.34780 * 120.00074 * 90.00437 * 3 2 1 14 14 S 1.71203 * 120.00271 * 180.02562 * 13 3 2 15 15 N 1.34776 * 119.99886 * 359.97438 * 13 3 2 16 16 C 1.34780 * 120.00311 * 180.02562 * 15 13 3 17 17 O 1.21524 * 119.99283 * 0.02562 * 16 15 13 18 18 C 1.47769 * 119.99951 * 180.02562 * 16 15 13 19 19 C 1.39615 * 120.14226 * 180.02562 * 18 16 15 20 20 C 1.37948 * 119.84619 * 179.97438 * 19 18 16 21 21 C 1.38369 * 120.14900 * 359.97438 * 20 19 18 22 22 C 1.38367 * 120.30176 * 0.02562 * 21 20 19 23 23 C 1.37945 * 120.14551 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46903 * 299.99477 * 1 2 3 26 26 H 1.08996 * 109.47211 * 59.99527 * 1 2 3 27 27 H 1.08999 * 109.47159 * 240.00500 * 2 1 3 28 28 H 1.08996 * 109.47211 * 120.00473 * 2 1 3 29 29 H 1.09001 * 109.46754 * 30.00212 * 4 3 2 30 30 H 1.09006 * 109.46833 * 149.99654 * 4 3 2 31 31 H 0.96995 * 119.99626 * 179.97438 * 8 7 5 32 32 H 0.96997 * 119.99989 * 0.02562 * 15 13 3 33 33 H 1.07998 * 120.08035 * 359.69992 * 19 18 16 34 34 H 1.08000 * 119.92562 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.84801 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.92878 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.07609 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0969 -3.4169 10 1 5.9774 0.8756 -4.2593 11 1 6.3920 3.2641 -4.2002 12 1 6.7735 1.9179 -2.2197 13 6 2.2431 2.0165 1.1672 14 16 2.8132 3.6308 1.1673 15 7 2.0180 1.3813 2.3344 16 6 2.2422 2.0167 3.5017 17 8 2.6469 3.1626 3.5016 18 6 1.9960 1.3200 4.7813 19 6 2.2267 1.9756 5.9922 20 6 1.9943 1.3196 7.1833 21 6 1.5330 0.0150 7.1796 22 6 1.3023 -0.6405 5.9831 23 6 1.5306 0.0038 4.7850 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1382 31 1 3.6750 3.5164 -4.4439 32 1 1.6946 0.4668 2.3344 33 1 2.5906 2.9924 5.9965 34 1 2.1720 1.8256 8.1207 35 1 1.3531 -0.4941 8.1149 36 1 0.9418 -1.6586 5.9873 37 1 1.3505 -0.5091 3.8517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195400077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = 34.603224 kcal Electronic energy + Delta-G solvation = -20640.817477 eV Core-core repulsion = 17510.655890 eV Total energy + Delta-G solvation = -3130.161587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.80158 -38.98613 -37.77509 -34.66760 -32.79281 -31.70463 -31.20255 -30.90766 -27.61546 -25.23229 -23.99039 -23.21137 -22.68411 -20.97213 -20.76668 -18.61532 -17.37496 -16.76180 -16.49606 -15.59723 -15.45718 -15.28592 -14.70244 -14.61593 -14.27862 -13.99680 -13.78159 -13.69101 -13.23957 -12.88874 -12.28548 -12.12052 -11.95657 -11.60754 -11.45080 -11.39061 -11.11195 -10.92408 -10.74292 -10.34651 -10.17272 -10.07501 -9.84106 -9.30270 -9.22450 -8.70384 -8.45517 -6.95013 -6.07212 -5.65394 -4.11501 0.58802 1.07505 1.77436 2.51172 2.93374 3.16382 3.30067 3.38722 3.43298 3.64836 3.70858 4.42400 4.46040 4.49796 4.63008 4.82847 4.84915 5.06631 5.14262 5.19948 5.28199 5.30456 5.48336 5.59777 5.68316 5.83358 5.93447 6.02516 6.08721 6.14297 6.15183 6.58044 6.67091 6.91548 7.32966 7.45016 7.81038 7.87782 8.11019 8.16028 8.86977 9.51602 11.01142 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.004132 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.279363 B = 6775.204589 C = 7214.318356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.084 3.916 3 N -0.529 5.529 4 C 0.236 3.764 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.889 5.889 9 Si 0.900 3.100 10 H -0.282 1.282 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.515 3.485 14 S -0.539 6.539 15 N -0.651 5.651 16 C 0.529 3.471 17 O -0.407 6.407 18 C -0.127 4.127 19 C -0.058 4.058 20 C -0.126 4.126 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.093 4.093 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.265 0.735 32 H 0.399 0.601 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -12.497 17.705 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.043 4.043 3 N -0.235 5.235 4 C 0.117 3.883 5 C -0.560 4.560 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.528 5.528 9 Si 0.727 3.273 10 H -0.208 1.208 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.163 3.837 14 S -0.404 6.404 15 N -0.299 5.299 16 C 0.311 3.689 17 O -0.273 6.273 18 C -0.131 4.131 19 C -0.077 4.077 20 C -0.144 4.144 21 C -0.117 4.117 22 C -0.144 4.144 23 C -0.112 4.112 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.121 0.879 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.238 0.762 33 H 0.158 0.842 34 H 0.148 0.852 35 H 0.144 0.856 36 H 0.146 0.854 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.146 -10.571 17.399 21.576 hybrid contribution 0.469 -1.776 -0.407 1.881 sum -6.677 -12.347 16.992 22.040 Atomic orbital electron populations 1.22226 0.95188 1.02390 1.03150 1.21823 0.94761 0.83985 1.03688 1.48161 1.56521 1.12251 1.06542 1.19968 0.97413 0.95898 0.75006 1.21117 0.96043 1.32592 1.06276 0.92534 1.24831 0.97808 0.94601 0.96242 1.69915 1.35717 1.32874 1.14258 0.86464 0.84619 0.77593 0.78585 1.20803 1.20942 1.19807 1.22482 0.85149 0.95379 0.80698 1.93134 1.57340 0.96625 1.93273 1.43151 1.63315 1.17442 1.06018 1.18434 0.80471 0.87183 0.82849 1.91318 1.35636 1.14753 1.85615 1.20153 1.04322 0.94976 0.93688 1.21336 0.95232 1.00469 0.90628 1.21188 1.00034 0.95061 0.98091 1.21381 0.97229 0.94825 0.98251 1.21086 1.00918 1.00271 0.92133 1.21302 0.97643 0.93630 0.98589 0.91160 0.92888 0.91075 0.87912 0.91923 0.94152 0.90361 0.92575 0.76226 0.84222 0.85175 0.85585 0.85385 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 10.24 37.16 0.38 -1.54 16 2 C 0.08 1.16 5.89 -4.05 -0.02 1.14 16 3 N -0.53 -10.45 2.46 -177.09 -0.43 -10.88 16 4 C 0.24 5.83 4.92 -5.20 -0.03 5.80 16 5 C -0.52 -14.24 9.39 -34.44 -0.32 -14.56 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.81 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.52 10.69 7.65 -86.92 -0.66 10.03 16 14 S -0.54 -14.16 25.01 -107.50 -2.69 -16.85 16 15 N -0.65 -10.33 5.05 -13.80 -0.07 -10.40 16 16 C 0.53 8.76 7.70 -12.36 -0.10 8.66 16 17 O -0.41 -8.56 13.10 5.34 0.07 -8.49 16 18 C -0.13 -1.56 5.87 -104.97 -0.62 -2.18 16 19 C -0.06 -0.65 9.60 -39.17 -0.38 -1.02 16 20 C -0.13 -1.06 10.03 -39.64 -0.40 -1.46 16 21 C -0.10 -0.72 10.04 -39.49 -0.40 -1.12 16 22 C -0.13 -0.95 10.03 -39.64 -0.40 -1.34 16 23 C -0.09 -0.86 9.54 -39.18 -0.37 -1.23 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.10 1.46 8.07 -51.93 -0.42 1.04 16 28 H 0.06 0.68 6.36 -51.93 -0.33 0.35 16 29 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 30 H 0.08 2.22 6.58 -51.93 -0.34 1.88 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.40 4.61 4.46 -40.82 -0.18 4.42 16 33 H 0.14 1.63 7.65 -52.49 -0.40 1.23 16 34 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 37 H 0.12 0.85 6.41 -52.48 -0.34 0.51 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -35.92 328.44 -10.38 -46.30 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -4.51 Total: 0.72 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -3.41 Total: 2.99 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: 0.23 Total: -46.43 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.07 Total: -8.49 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -14.16 SS G_CDS: -2.69 Total: -16.85 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.92 -10.38 -46.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195400077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.906 kcal (2) G-P(sol) polarization free energy of solvation -35.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds