Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46496 * 109.47300 * 2 1 4 4 C 1.46500 * 120.00298 * 270.00176 * 3 2 1 5 5 C 1.50696 * 109.47189 * 269.99842 * 4 3 2 6 6 H 1.07998 * 120.00410 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99815 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00123 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99983 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46805 * 90.00469 * 9 7 5 11 11 H 1.48491 * 109.47405 * 210.00338 * 9 7 5 12 12 H 1.48492 * 109.47196 * 330.00794 * 9 7 5 13 13 C 1.34780 * 120.00074 * 90.00437 * 3 2 1 14 14 S 1.71203 * 120.00271 * 180.02562 * 13 3 2 15 15 N 1.34776 * 119.99886 * 359.97438 * 13 3 2 16 16 C 1.34780 * 120.00311 * 180.02562 * 15 13 3 17 17 O 1.21524 * 119.99283 * 0.02562 * 16 15 13 18 18 C 1.47769 * 119.99951 * 180.02562 * 16 15 13 19 19 C 1.39615 * 120.14226 * 180.02562 * 18 16 15 20 20 C 1.37948 * 119.84619 * 179.97438 * 19 18 16 21 21 C 1.38369 * 120.14900 * 359.97438 * 20 19 18 22 22 C 1.38367 * 120.30176 * 0.02562 * 21 20 19 23 23 C 1.37945 * 120.14551 * 359.97438 * 22 21 20 24 24 H 1.08999 * 109.47178 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.46903 * 299.99477 * 1 2 3 26 26 H 1.08996 * 109.47211 * 59.99527 * 1 2 3 27 27 H 1.08999 * 109.47159 * 240.00500 * 2 1 3 28 28 H 1.08996 * 109.47211 * 120.00473 * 2 1 3 29 29 H 1.09001 * 109.46754 * 30.00212 * 4 3 2 30 30 H 1.09006 * 109.46833 * 149.99654 * 4 3 2 31 31 H 0.96995 * 119.99626 * 179.97438 * 8 7 5 32 32 H 0.96997 * 119.99989 * 0.02562 * 15 13 3 33 33 H 1.07998 * 120.08035 * 359.69992 * 19 18 16 34 34 H 1.08000 * 119.92562 * 180.02562 * 20 19 18 35 35 H 1.08000 * 119.84801 * 179.97438 * 21 20 19 36 36 H 1.08000 * 119.92878 * 180.02562 * 22 21 20 37 37 H 1.08003 * 120.07609 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8351 -1.7037 6 1 4.3429 1.2309 -1.0958 7 6 4.1490 2.3898 -2.8780 8 7 3.3489 3.1259 -3.6180 9 14 5.9134 2.0969 -3.4169 10 1 5.9774 0.8756 -4.2593 11 1 6.3920 3.2641 -4.2002 12 1 6.7735 1.9179 -2.2197 13 6 2.2431 2.0165 1.1672 14 16 2.8132 3.6308 1.1673 15 7 2.0180 1.3813 2.3344 16 6 2.2422 2.0167 3.5017 17 8 2.6469 3.1626 3.5016 18 6 1.9960 1.3200 4.7813 19 6 2.2267 1.9756 5.9922 20 6 1.9943 1.3196 7.1833 21 6 1.5330 0.0150 7.1796 22 6 1.3023 -0.6405 5.9831 23 6 1.5306 0.0038 4.7850 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.5816 1.6878 -2.0283 30 1 2.0955 3.1411 -1.1382 31 1 3.6750 3.5164 -4.4439 32 1 1.6946 0.4668 2.3344 33 1 2.5906 2.9924 5.9965 34 1 2.1720 1.8256 8.1207 35 1 1.3531 -0.4941 8.1149 36 1 0.9418 -1.6586 5.9873 37 1 1.3505 -0.5091 3.8517 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195400077.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = 11.660110 kcal Electronic energy + Delta-G solvation = -20641.812365 eV Core-core repulsion = 17510.655890 eV Total energy + Delta-G solvation = -3131.156475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.13989 -40.06913 -39.08185 -36.23638 -34.77018 -32.68117 -32.15262 -31.88573 -29.49918 -26.65225 -25.35526 -24.65958 -23.46768 -22.35923 -22.06624 -19.83848 -18.81413 -18.67382 -17.67434 -16.97833 -16.82931 -16.51323 -16.20619 -15.88808 -15.48937 -15.23109 -14.97810 -14.63958 -14.36139 -14.08859 -13.71109 -13.51876 -13.22560 -12.91409 -12.86214 -12.72778 -12.62250 -12.32574 -12.09654 -12.04507 -11.96650 -11.79432 -11.63076 -10.61717 -10.45528 -9.97965 -9.95196 -8.90927 -8.21831 -7.61980 -6.33286 -0.36071 0.23069 0.41095 0.88365 1.36034 1.41678 1.47433 1.52670 1.80847 2.15773 2.40980 2.87283 3.11511 3.40907 3.74672 3.85852 3.99757 4.07684 4.19788 4.25871 4.45190 4.48846 4.51381 4.71039 4.78775 4.83677 4.94301 5.05675 5.16583 5.22854 5.28812 5.39259 5.47036 5.50701 5.66939 5.83287 5.94149 5.98354 6.16090 6.70629 6.86185 7.33324 8.86049 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023111 B = 0.004132 C = 0.003880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.279363 B = 6775.204589 C = 7214.318356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.070 3.930 3 N -0.520 5.520 4 C 0.251 3.749 5 C -0.529 4.529 6 H 0.050 0.950 7 C 0.018 3.982 8 N -0.921 5.921 9 Si 0.962 3.038 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.280 1.280 13 C 0.550 3.450 14 S -0.678 6.678 15 N -0.627 5.627 16 C 0.527 3.473 17 O -0.460 6.460 18 C -0.151 4.151 19 C -0.078 4.078 20 C -0.127 4.127 21 C -0.085 4.085 22 C -0.121 4.121 23 C -0.089 4.089 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.105 0.895 28 H 0.104 0.896 29 H 0.043 0.957 30 H 0.036 0.964 31 H 0.267 0.733 32 H 0.425 0.575 33 H 0.118 0.882 34 H 0.152 0.848 35 H 0.162 0.838 36 H 0.166 0.834 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.782 -17.391 19.727 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.053 4.053 3 N -0.223 5.223 4 C 0.130 3.870 5 C -0.568 4.568 6 H 0.068 0.932 7 C -0.182 4.182 8 N -0.561 5.561 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.192 3.808 14 S -0.545 6.545 15 N -0.277 5.277 16 C 0.312 3.688 17 O -0.328 6.328 18 C -0.155 4.155 19 C -0.097 4.097 20 C -0.145 4.145 21 C -0.103 4.103 22 C -0.138 4.138 23 C -0.107 4.107 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.269 0.731 33 H 0.136 0.864 34 H 0.170 0.830 35 H 0.180 0.820 36 H 0.183 0.817 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -8.194 -15.571 19.453 26.230 hybrid contribution 0.666 -0.457 -0.883 1.197 sum -7.529 -16.028 18.570 25.659 Atomic orbital electron populations 1.22202 0.92546 1.05041 1.02377 1.22383 0.96860 0.80158 1.05941 1.48147 1.54953 1.14395 1.04793 1.19427 0.96504 0.94179 0.76880 1.21321 0.96976 1.32320 1.06162 0.93153 1.25644 1.01691 0.94381 0.96494 1.70022 1.37514 1.33805 1.14737 0.85497 0.79612 0.78180 0.77996 1.18424 1.21028 1.20475 1.21742 0.83401 0.93337 0.82343 1.93418 1.63790 1.02833 1.94464 1.43006 1.62269 1.18227 1.04203 1.19306 0.78595 0.86864 0.84018 1.91296 1.37999 1.17343 1.86211 1.19793 1.08165 0.96634 0.90939 1.21370 0.96423 1.00121 0.91804 1.21455 0.99531 0.95908 0.97613 1.21884 0.94523 0.93932 0.99953 1.21546 0.99453 1.01690 0.91146 1.21583 0.96392 0.91940 1.00794 0.86678 0.92454 0.93183 0.87669 0.87761 0.93905 0.94558 0.92427 0.73136 0.86401 0.83043 0.82027 0.81673 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.24 71.98 0.74 -2.35 16 2 C 0.07 1.73 5.89 86.38 0.51 2.24 16 3 N -0.52 -20.49 2.46 -714.19 -1.75 -22.24 16 4 C 0.25 12.82 4.92 85.63 0.42 13.24 16 5 C -0.53 -29.52 9.39 25.60 0.24 -29.28 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.02 1.01 5.46 84.65 0.46 1.47 16 8 N -0.92 -55.05 13.29 21.45 0.28 -54.76 16 9 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 13 C 0.55 23.36 7.65 179.05 1.37 24.73 16 14 S -0.68 -38.46 25.01 -56.49 -1.41 -39.87 16 15 N -0.63 -19.39 5.05 -315.86 -1.60 -20.99 16 16 C 0.53 17.82 7.70 86.76 0.67 18.49 16 17 O -0.46 -20.85 13.10 -3.79 -0.05 -20.90 16 18 C -0.15 -3.56 5.87 -20.09 -0.12 -3.68 16 19 C -0.08 -1.74 9.60 22.53 0.22 -1.52 16 20 C -0.13 -1.80 10.03 22.23 0.22 -1.58 16 21 C -0.09 -0.81 10.04 22.33 0.22 -0.59 16 22 C -0.12 -1.14 10.03 22.23 0.22 -0.92 16 23 C -0.09 -1.27 9.54 22.53 0.21 -1.06 16 24 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 26 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.11 2.66 8.07 -2.39 -0.02 2.65 16 28 H 0.10 1.73 6.36 -2.39 -0.02 1.71 16 29 H 0.04 2.17 8.07 -2.39 -0.02 2.15 16 30 H 0.04 2.20 6.58 -2.38 -0.02 2.18 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.42 8.40 4.46 -92.71 -0.41 7.99 16 33 H 0.12 3.03 7.65 -2.91 -0.02 3.01 16 34 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 35 H 0.16 0.47 8.06 -2.91 -0.02 0.44 16 36 H 0.17 0.43 8.06 -2.91 -0.02 0.40 16 37 H 0.15 1.24 6.41 -2.91 -0.02 1.22 16 Total: -1.00 -87.92 328.44 3.56 -84.35 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.67 Total: 7.86 kcal Atomic # 6 Polarization: 13.82 SS G_CDS: 5.39 Total: 19.21 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -3.07 Total: -97.99 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.05 Total: -20.90 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: -38.46 SS G_CDS: -1.41 Total: -39.87 kcal Total: -87.92 3.56 -84.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195400077.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.012 kcal (2) G-P(sol) polarization free energy of solvation -87.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds