Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00397 * 2 1 4 4 H 1.48490 * 109.47167 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.46615 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.46792 * 149.99814 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99577 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46650 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46870 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99628 * 179.97438 * 12 11 10 14 14 S 1.71203 * 120.00271 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99886 * 179.97438 * 13 12 11 16 16 C 1.34780 * 120.00311 * 180.02562 * 15 13 12 17 17 O 1.21529 * 119.99695 * 0.02562 * 16 15 13 18 18 C 1.47769 * 119.99951 * 180.02562 * 16 15 13 19 19 C 1.39615 * 120.14226 * 180.02562 * 18 16 15 20 20 C 1.37948 * 119.84619 * 179.97438 * 19 18 16 21 21 C 1.38368 * 120.14900 * 359.97438 * 20 19 18 22 22 C 1.38367 * 120.30190 * 0.04426 * 21 20 19 23 23 C 1.37945 * 120.14535 * 359.95879 * 22 21 20 24 24 H 0.97003 * 119.99700 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46964 * 59.99729 * 9 7 2 26 26 H 1.08993 * 109.47251 * 299.99627 * 9 7 2 27 27 H 1.08994 * 109.47088 * 60.00521 * 10 9 7 28 28 H 1.08993 * 109.47178 * 299.99903 * 10 9 7 29 29 H 1.09002 * 109.47146 * 60.00117 * 11 10 9 30 30 H 1.08999 * 109.47364 * 300.00526 * 11 10 9 31 31 H 0.96997 * 120.00247 * 0.02562 * 12 11 10 32 32 H 0.96997 * 119.99989 * 0.02562 * 15 13 12 33 33 H 1.07998 * 120.08035 * 359.69992 * 19 18 16 34 34 H 1.08000 * 119.92582 * 179.97438 * 20 19 18 35 35 H 1.08008 * 119.85054 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.92894 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.07609 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6368 -0.0001 12 7 6.0396 -4.0181 0.0004 13 6 7.3647 -4.2644 -0.0001 14 16 8.4773 -2.9632 -0.0006 15 7 7.8139 -5.5351 0.0009 16 6 9.1390 -5.7815 0.0009 17 8 9.9288 -4.8578 0.0005 18 6 9.6314 -7.1747 0.0014 19 6 11.0034 -7.4334 0.0020 20 6 11.4564 -8.7363 0.0030 21 6 10.5544 -9.7856 0.0040 22 6 9.1934 -9.5364 0.0030 23 6 8.7269 -8.2382 0.0019 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8894 27 1 3.6584 -3.1503 -0.8903 28 1 3.6577 -3.1507 0.8896 29 1 5.9148 -2.1231 0.8899 30 1 5.9147 -2.1229 -0.8900 31 1 5.4093 -4.7553 0.0003 32 1 7.1836 -6.2723 0.0015 33 1 11.7085 -6.6153 -0.0028 34 1 12.5174 -8.9379 0.0031 35 1 10.9144 -10.8040 0.0052 36 1 8.4948 -10.3599 0.0033 37 1 7.6643 -8.0449 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195432125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = 18.047566 kcal Electronic energy + Delta-G solvation = -19388.559822 eV Core-core repulsion = 16257.680328 eV Total energy + Delta-G solvation = -3130.879494 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.20245 -39.19628 -37.93690 -35.48582 -33.61301 -32.03869 -31.48360 -31.36359 -27.72559 -25.41175 -23.67661 -23.17934 -22.87733 -21.40995 -20.54837 -19.22061 -18.02807 -17.04781 -16.77230 -16.09496 -15.97150 -15.68976 -15.08807 -15.06021 -14.86835 -14.29489 -14.07572 -13.93947 -13.48929 -12.92122 -12.76616 -12.24080 -12.09687 -11.82877 -11.64241 -11.26632 -11.05240 -10.96281 -10.86854 -10.20848 -10.02049 -9.79378 -9.65060 -9.54329 -9.47882 -9.30477 -8.60195 -7.91329 -6.55853 -6.11287 -4.10992 0.25795 0.83236 1.04916 1.79397 2.36542 2.50838 3.25204 3.30103 3.38034 3.38348 3.42509 4.04376 4.23699 4.39517 4.41046 4.59070 4.82475 4.93981 5.11296 5.22807 5.23524 5.44272 5.47816 5.50985 5.70307 5.78560 5.86059 5.91211 5.95911 6.26379 6.33041 6.41326 6.59118 6.69620 6.98179 7.13548 7.26706 7.62647 7.69172 8.43158 8.91123 9.50581 11.01649 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036777 B = 0.002567 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.161389 B =10903.097685 C =11638.511768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.525 4.525 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.661 5.661 13 C 0.517 3.483 14 S -0.531 6.531 15 N -0.647 5.647 16 C 0.533 3.467 17 O -0.403 6.403 18 C -0.133 4.133 19 C -0.055 4.055 20 C -0.125 4.125 21 C -0.093 4.093 22 C -0.125 4.125 23 C -0.091 4.091 24 H 0.264 0.736 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.398 0.602 32 H 0.406 0.594 33 H 0.140 0.860 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.018 -22.893 0.030 29.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.563 4.563 8 H 0.089 0.911 9 C -0.047 4.047 10 C -0.153 4.153 11 C -0.010 4.010 12 N -0.288 5.288 13 C 0.164 3.836 14 S -0.402 6.402 15 N -0.293 5.293 16 C 0.316 3.684 17 O -0.269 6.269 18 C -0.137 4.137 19 C -0.074 4.074 20 C -0.143 4.143 21 C -0.112 4.112 22 C -0.143 4.143 23 C -0.110 4.110 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.234 0.766 32 H 0.244 0.756 33 H 0.158 0.842 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 20.118 -21.127 0.034 29.173 hybrid contribution -1.112 -0.712 -0.023 1.321 sum 19.006 -21.839 0.011 28.951 Atomic orbital electron populations 1.69907 1.06350 1.27075 1.50694 1.25024 0.94766 0.99315 0.94310 0.86780 0.80482 0.83400 0.78722 1.20153 1.21331 1.18687 1.21042 0.89155 0.94509 1.51583 0.91079 1.19488 0.97324 0.90841 0.97080 1.21780 0.89849 1.01802 1.01848 1.22218 0.96080 0.78052 1.04630 1.45662 1.02932 1.12251 1.67999 1.22531 0.89114 0.89300 0.82684 1.93436 1.51057 1.30568 1.65113 1.43072 1.10522 1.06628 1.69074 1.18478 0.81254 0.89607 0.79082 1.91325 1.54562 1.42634 1.38368 1.19964 0.95001 0.91785 1.06956 1.21334 0.94110 0.97691 0.94298 1.21218 1.00403 0.92153 1.00532 1.21445 0.93323 0.99608 0.96780 1.21125 0.96008 0.96493 1.00702 1.21302 0.98938 0.92702 0.98014 0.92620 0.95981 0.96406 0.92001 0.91967 0.89376 0.89372 0.76598 0.75626 0.84175 0.84982 0.85360 0.85164 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.53 -14.33 9.66 -34.44 -0.33 -14.66 16 8 H 0.07 2.07 7.99 -52.49 -0.42 1.65 16 9 C -0.01 -0.21 4.04 -27.88 -0.11 -0.32 16 10 C -0.11 -1.94 5.27 -26.73 -0.14 -2.08 16 11 C 0.11 1.68 5.13 -4.04 -0.02 1.66 16 12 N -0.66 -7.76 5.56 -62.03 -0.34 -8.11 16 13 C 0.52 6.98 7.93 -86.92 -0.69 6.29 16 14 S -0.53 -10.04 25.61 -107.50 -2.75 -12.80 16 15 N -0.65 -6.41 5.19 -13.80 -0.07 -6.48 16 16 C 0.53 6.24 7.70 -12.36 -0.10 6.14 16 17 O -0.40 -6.48 13.10 5.34 0.07 -6.41 16 18 C -0.13 -1.15 5.87 -104.97 -0.62 -1.76 16 19 C -0.06 -0.45 9.60 -39.17 -0.38 -0.83 16 20 C -0.13 -0.74 10.03 -39.64 -0.40 -1.13 16 21 C -0.09 -0.46 10.04 -39.49 -0.40 -0.86 16 22 C -0.13 -0.63 10.03 -39.64 -0.40 -1.02 16 23 C -0.09 -0.54 9.54 -39.18 -0.37 -0.91 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.50 7.20 -51.93 -0.37 0.12 16 26 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 1.42 7.99 -51.93 -0.42 1.00 16 30 H 0.09 1.41 7.99 -51.93 -0.41 1.00 16 31 H 0.40 3.28 8.49 -40.82 -0.35 2.94 16 32 H 0.41 2.21 6.74 -40.82 -0.28 1.94 16 33 H 0.14 1.18 7.65 -52.49 -0.40 0.78 16 34 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 35 H 0.13 0.34 8.06 -52.48 -0.42 -0.08 16 36 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 37 H 0.12 0.41 6.41 -52.48 -0.34 0.07 16 LS Contribution 328.75 15.07 4.95 4.95 Total: -1.00 -36.31 328.75 -10.74 -47.05 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -4.66 Total: -0.82 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -4.05 Total: -7.67 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.36 Total: -41.06 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: 0.07 Total: -6.41 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: -10.04 SS G_CDS: -2.75 Total: -12.80 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.31 -10.74 -47.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195432125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.102 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds