Wall clock time and date at job start Tue Mar 31 2020 06:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00397 * 2 1 4 4 H 1.48490 * 109.47167 * 270.00150 * 3 2 1 5 5 H 1.48501 * 109.46615 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.46792 * 149.99814 * 3 2 1 7 7 C 1.37882 * 119.99506 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00416 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99577 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46650 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46870 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46969 * 179.97438 * 11 10 9 13 13 C 1.34780 * 119.99628 * 179.97438 * 12 11 10 14 14 S 1.71203 * 120.00271 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99886 * 179.97438 * 13 12 11 16 16 C 1.34780 * 120.00311 * 180.02562 * 15 13 12 17 17 O 1.21529 * 119.99695 * 0.02562 * 16 15 13 18 18 C 1.47769 * 119.99951 * 180.02562 * 16 15 13 19 19 C 1.39615 * 120.14226 * 180.02562 * 18 16 15 20 20 C 1.37948 * 119.84619 * 179.97438 * 19 18 16 21 21 C 1.38368 * 120.14900 * 359.97438 * 20 19 18 22 22 C 1.38367 * 120.30190 * 0.04426 * 21 20 19 23 23 C 1.37945 * 120.14535 * 359.95879 * 22 21 20 24 24 H 0.97003 * 119.99700 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.46964 * 59.99729 * 9 7 2 26 26 H 1.08993 * 109.47251 * 299.99627 * 9 7 2 27 27 H 1.08994 * 109.47088 * 60.00521 * 10 9 7 28 28 H 1.08993 * 109.47178 * 299.99903 * 10 9 7 29 29 H 1.09002 * 109.47146 * 60.00117 * 11 10 9 30 30 H 1.08999 * 109.47364 * 300.00526 * 11 10 9 31 31 H 0.96997 * 120.00247 * 0.02562 * 12 11 10 32 32 H 0.96997 * 119.99989 * 0.02562 * 15 13 12 33 33 H 1.07998 * 120.08035 * 359.69992 * 19 18 16 34 34 H 1.08000 * 119.92582 * 179.97438 * 20 19 18 35 35 H 1.08008 * 119.85054 * 180.02562 * 21 20 19 36 36 H 1.08001 * 119.92894 * 179.97438 * 22 21 20 37 37 H 1.08003 * 120.07609 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5514 -2.6368 -0.0001 12 7 6.0396 -4.0181 0.0004 13 6 7.3647 -4.2644 -0.0001 14 16 8.4773 -2.9632 -0.0006 15 7 7.8139 -5.5351 0.0009 16 6 9.1390 -5.7815 0.0009 17 8 9.9288 -4.8578 0.0005 18 6 9.6314 -7.1747 0.0014 19 6 11.0034 -7.4334 0.0020 20 6 11.4564 -8.7363 0.0030 21 6 10.5544 -9.7856 0.0040 22 6 9.1934 -9.5364 0.0030 23 6 8.7269 -8.2382 0.0019 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6809 0.8905 26 1 3.8752 -0.6798 -0.8894 27 1 3.6584 -3.1503 -0.8903 28 1 3.6577 -3.1507 0.8896 29 1 5.9148 -2.1231 0.8899 30 1 5.9147 -2.1229 -0.8900 31 1 5.4093 -4.7553 0.0003 32 1 7.1836 -6.2723 0.0015 33 1 11.7085 -6.6153 -0.0028 34 1 12.5174 -8.9379 0.0031 35 1 10.9144 -10.8040 0.0052 36 1 8.4948 -10.3599 0.0033 37 1 7.6643 -8.0449 0.0016 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195432125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:24 Heat of formation + Delta-G solvation = -6.334143 kcal Electronic energy + Delta-G solvation = -19389.617092 eV Core-core repulsion = 16257.680328 eV Total energy + Delta-G solvation = -3131.936764 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.11713 -39.87634 -38.97039 -36.73751 -35.29813 -33.54795 -32.29904 -31.90205 -29.32390 -26.49967 -24.65141 -24.55789 -23.44000 -22.38012 -22.02751 -20.15098 -19.18459 -18.66165 -17.78796 -17.15539 -16.84817 -16.54483 -16.30949 -16.29143 -15.87494 -15.50542 -14.92042 -14.77836 -14.65127 -14.38345 -13.86360 -13.68940 -13.21589 -12.86922 -12.73577 -12.65974 -12.34724 -12.05973 -11.93880 -11.85825 -11.68858 -11.63489 -11.33119 -10.79035 -10.75296 -10.02137 -9.97503 -9.27051 -8.29243 -7.93742 -6.32632 -0.47529 0.07396 0.39470 0.64818 1.20132 1.37970 1.40600 1.51400 1.73310 2.26416 2.36723 2.84690 3.07305 3.35218 3.84240 3.90567 3.97596 4.14341 4.22612 4.38359 4.43200 4.48611 4.51688 4.63767 4.81723 4.83331 5.02360 5.03750 5.09506 5.27370 5.41249 5.45715 5.49968 5.53962 5.65180 5.75601 5.91733 6.04225 6.26691 6.75514 6.75726 7.32460 8.86746 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.036777 B = 0.002567 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.161389 B =10903.097685 C =11638.511768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.247 1.247 7 C -0.527 4.527 8 H 0.041 0.959 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.127 3.873 12 N -0.636 5.636 13 C 0.554 3.446 14 S -0.648 6.648 15 N -0.624 5.624 16 C 0.534 3.466 17 O -0.453 6.453 18 C -0.153 4.153 19 C -0.076 4.076 20 C -0.130 4.130 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.086 4.086 24 H 0.265 0.735 25 H 0.022 0.978 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.422 0.578 32 H 0.432 0.568 33 H 0.122 0.878 34 H 0.150 0.850 35 H 0.157 0.843 36 H 0.161 0.839 37 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.344 -25.907 0.021 32.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.565 4.565 8 H 0.060 0.940 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.263 5.263 13 C 0.195 3.805 14 S -0.521 6.521 15 N -0.272 5.272 16 C 0.319 3.681 17 O -0.321 6.321 18 C -0.157 4.157 19 C -0.095 4.095 20 C -0.148 4.148 21 C -0.104 4.104 22 C -0.143 4.143 23 C -0.105 4.105 24 H 0.074 0.926 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.263 0.737 32 H 0.275 0.725 33 H 0.140 0.860 34 H 0.167 0.833 35 H 0.175 0.825 36 H 0.178 0.822 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 20.419 -24.232 0.024 31.688 hybrid contribution -1.289 -0.050 -0.021 1.291 sum 19.130 -24.282 0.003 30.912 Atomic orbital electron populations 1.70047 1.08138 1.28057 1.52745 1.25933 0.95537 1.03274 0.94366 0.85773 0.79626 0.78861 0.79137 1.19403 1.21262 1.17067 1.21435 0.91782 0.93252 1.50075 0.94033 1.19454 0.94078 0.94471 0.97100 1.21525 0.90842 0.98592 1.02849 1.21837 0.94545 0.79262 1.04022 1.45290 1.02654 1.12194 1.66201 1.21820 0.88370 0.89379 0.80926 1.93739 1.53748 1.33944 1.70627 1.42946 1.10875 1.05883 1.67481 1.19118 0.81115 0.90576 0.77313 1.91311 1.55521 1.44607 1.40656 1.19749 0.95646 0.90300 1.10014 1.21385 0.94000 0.98480 0.95600 1.21453 1.01792 0.91368 1.00157 1.21874 0.93361 1.00604 0.94608 1.21543 0.96633 0.96801 0.99364 1.21615 0.99888 0.92316 0.96635 0.92568 0.95957 0.96064 0.91009 0.91017 0.90219 0.90144 0.73710 0.72479 0.85990 0.83255 0.82520 0.82164 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.24 13.96 21.45 0.30 -57.94 16 2 C 0.01 0.34 5.47 84.66 0.46 0.80 16 3 Si 0.94 43.91 27.47 68.60 1.88 45.79 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 6 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 7 C -0.53 -28.73 9.66 25.60 0.25 -28.48 16 8 H 0.04 2.44 7.99 -2.91 -0.02 2.42 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.17 5.27 30.60 0.16 -3.00 16 11 C 0.13 3.56 5.13 86.38 0.44 4.00 16 12 N -0.64 -13.24 5.56 -350.16 -1.95 -15.19 16 13 C 0.55 14.23 7.93 179.05 1.42 15.65 16 14 S -0.65 -25.40 25.61 -56.49 -1.45 -26.85 16 15 N -0.62 -11.12 5.19 -315.85 -1.64 -12.76 16 16 C 0.53 12.30 7.70 86.76 0.67 12.97 16 17 O -0.45 -15.32 13.10 -3.81 -0.05 -15.37 16 18 C -0.15 -2.45 5.87 -20.09 -0.12 -2.57 16 19 C -0.08 -1.21 9.60 22.53 0.22 -1.00 16 20 C -0.13 -1.29 10.03 22.23 0.22 -1.06 16 21 C -0.09 -0.54 10.04 22.33 0.22 -0.31 16 22 C -0.13 -0.71 10.03 22.23 0.22 -0.49 16 23 C -0.09 -0.72 9.54 22.53 0.21 -0.51 16 24 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 25 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 26 H 0.02 0.90 7.57 -2.39 -0.02 0.89 16 27 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.08 2.47 7.99 -2.39 -0.02 2.45 16 30 H 0.08 2.48 7.99 -2.39 -0.02 2.46 16 31 H 0.42 5.19 8.49 -92.71 -0.79 4.41 16 32 H 0.43 3.05 6.74 -92.71 -0.63 2.43 16 33 H 0.12 2.30 7.65 -2.91 -0.02 2.28 16 34 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 35 H 0.16 0.09 8.06 -2.91 -0.02 0.07 16 36 H 0.16 -0.01 8.06 -2.91 -0.02 -0.03 16 37 H 0.15 0.26 6.41 -2.91 -0.02 0.24 16 Total: -1.00 -83.96 328.75 1.24 -82.72 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -0.36 Total: 4.03 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 4.51 Total: -4.43 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -3.29 Total: -85.88 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.37 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 1.88 Total: 45.79 kcal Atomic # 16 Polarization: -25.40 SS G_CDS: -1.45 Total: -26.85 kcal Total: -83.96 1.24 -82.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195432125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.384 kcal (2) G-P(sol) polarization free energy of solvation -83.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds