Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 305.00272 * 3 2 1 5 5 C 1.50691 * 109.47283 * 185.00133 * 3 2 1 6 6 H 1.07997 * 119.99993 * 239.99936 * 5 3 2 7 7 C 1.37878 * 120.00443 * 59.99753 * 5 3 2 8 8 N 1.31521 * 119.99732 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00505 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46841 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47025 * 120.00030 * 9 7 5 12 12 H 1.48499 * 109.47478 * 240.00283 * 9 7 5 13 13 N 1.46499 * 109.47022 * 64.99856 * 3 2 1 14 14 C 1.34784 * 119.99971 * 275.00268 * 13 3 2 15 15 S 1.71195 * 120.00082 * 359.97438 * 14 13 3 16 16 N 1.34771 * 119.99547 * 180.02562 * 14 13 3 17 17 C 1.34784 * 119.99547 * 180.02562 * 16 14 13 18 18 O 1.21521 * 120.00030 * 359.97438 * 17 16 14 19 19 C 1.47776 * 119.99796 * 179.97438 * 17 16 14 20 20 C 1.39609 * 120.14536 * 359.72551 * 19 17 16 21 21 C 1.37951 * 119.84368 * 179.78653 * 20 19 17 22 22 C 1.38360 * 120.15272 * 0.46659 * 21 20 19 23 23 C 1.38373 * 120.29512 * 359.78680 * 22 21 20 24 24 C 1.37945 * 120.15169 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46704 * 300.00428 * 1 2 3 26 26 H 1.08997 * 109.46933 * 59.99931 * 1 2 3 27 27 H 1.08996 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46704 * 239.99572 * 2 1 3 29 29 H 1.09003 * 109.46624 * 120.00390 * 2 1 3 30 30 H 0.96996 * 120.00362 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99984 * 95.00421 * 13 3 2 32 32 H 0.96995 * 120.00382 * 0.27138 * 16 14 13 33 33 H 1.08001 * 120.07875 * 359.97438 * 20 19 17 34 34 H 1.08004 * 119.92629 * 180.22734 * 21 20 19 35 35 H 1.07997 * 119.85580 * 179.76102 * 22 21 20 36 36 H 1.08006 * 119.92293 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.07485 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4441 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1434 0.8782 -1.2280 8 7 3.4062 0.3372 -2.1734 9 14 6.0050 0.8810 -1.3818 10 1 6.5988 1.5460 -0.1943 11 1 6.4970 -0.5178 -1.4630 12 1 6.3991 1.6164 -2.6103 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 16 -0.6579 2.6197 0.0501 16 7 0.0790 3.2674 2.5184 17 6 -1.1386 3.8339 2.6337 18 8 -1.9148 3.8014 1.6993 19 6 -1.5295 4.4946 3.8964 20 6 -0.6422 4.5287 4.9737 21 6 -1.0119 5.1510 6.1481 22 6 -2.2623 5.7320 6.2630 23 6 -3.1485 5.6971 5.2008 24 6 -2.7898 5.0824 4.0191 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0613 -2.9499 31 1 2.2721 2.1231 1.9977 32 1 0.7000 3.2968 3.2628 33 1 0.3325 4.0717 4.8869 34 1 -0.3251 5.1814 6.9811 35 1 -2.5482 6.2145 7.1859 36 1 -4.1232 6.1522 5.2973 37 1 -3.4826 5.0556 3.1911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195437898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = 29.638648 kcal Electronic energy + Delta-G solvation = -20532.747173 eV Core-core repulsion = 17402.370307 eV Total energy + Delta-G solvation = -3130.376867 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.75087 -38.86051 -37.52678 -35.10995 -32.79687 -31.60647 -31.21717 -30.77092 -27.46700 -25.07482 -23.37826 -22.90827 -22.47560 -21.40741 -19.95883 -18.99462 -17.76560 -16.69633 -16.17487 -15.61342 -15.46472 -15.33864 -14.83564 -14.69476 -14.02034 -13.95141 -13.68314 -13.61207 -12.86916 -12.75697 -11.98601 -11.92054 -11.46749 -11.40691 -11.33218 -11.01704 -10.88616 -10.60266 -10.48179 -10.32325 -10.11631 -9.60521 -9.32075 -9.27665 -9.22619 -8.95809 -8.47092 -6.82616 -6.22770 -5.65226 -4.34084 0.56291 1.06049 1.71842 2.44937 2.89365 3.02833 3.17476 3.25642 3.27264 3.67958 4.05642 4.30312 4.41827 4.49397 4.61805 4.82913 5.05266 5.08878 5.18275 5.46742 5.66815 5.93847 6.01083 6.06093 6.13439 6.44742 6.50310 6.55307 6.58183 6.79050 7.01952 7.19187 7.30261 7.44009 7.53605 7.63641 7.79782 8.04389 8.06910 8.24743 8.67796 9.31357 10.82106 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003756 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.136668 B = 7452.035939 C = 8132.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.261 3.739 4 H 0.083 0.917 5 C -0.545 4.545 6 H 0.061 0.939 7 C 0.072 3.928 8 N -0.872 5.872 9 Si 0.904 3.096 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.281 1.281 13 N -0.636 5.636 14 C 0.503 3.497 15 S -0.533 6.533 16 N -0.651 5.651 17 C 0.531 3.469 18 O -0.409 6.409 19 C -0.128 4.128 20 C -0.092 4.092 21 C -0.126 4.126 22 C -0.098 4.098 23 C -0.126 4.126 24 C -0.058 4.058 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.015 0.985 28 H 0.105 0.895 29 H 0.027 0.973 30 H 0.267 0.733 31 H 0.387 0.613 32 H 0.400 0.600 33 H 0.123 0.877 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 8.000 17.784 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.160 4.160 3 C 0.161 3.839 4 H 0.101 0.899 5 C -0.584 4.584 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.509 5.509 9 Si 0.731 3.269 10 H -0.198 1.198 11 H -0.207 1.207 12 H -0.207 1.207 13 N -0.260 5.260 14 C 0.149 3.851 15 S -0.402 6.402 16 N -0.298 5.298 17 C 0.312 3.688 18 O -0.275 6.275 19 C -0.132 4.132 20 C -0.111 4.111 21 C -0.144 4.144 22 C -0.116 4.116 23 C -0.144 4.144 24 C -0.077 4.077 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.034 0.966 28 H 0.123 0.877 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.222 0.778 32 H 0.237 0.763 33 H 0.141 0.859 34 H 0.146 0.854 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.614 7.776 15.903 19.270 hybrid contribution 2.395 -0.022 1.577 2.868 sum -5.219 7.754 17.480 19.822 Atomic orbital electron populations 1.22338 0.97216 0.97535 1.02766 1.21931 0.93442 0.98214 1.02365 1.19511 0.94754 0.90103 0.79573 0.89924 1.21134 0.89960 1.40391 1.06898 0.92116 1.24840 0.98784 0.94529 0.95163 1.69905 1.35173 1.36660 1.09132 0.86356 0.84427 0.77880 0.78213 1.19842 1.20739 1.20674 1.46266 1.10481 1.49816 1.19469 1.22541 0.89812 0.83380 0.89406 1.93062 1.48285 1.71671 1.27177 1.43043 1.18362 1.53707 1.14679 1.18419 0.81576 0.80353 0.88408 1.91312 1.49333 1.50751 1.36096 1.20130 0.96433 1.02725 0.93956 1.21326 0.98724 0.98095 0.92940 1.21097 0.96977 0.98712 0.97663 1.21387 0.93709 0.97785 0.98761 1.21188 1.00172 1.00005 0.93059 1.21328 0.94729 0.93597 0.98020 0.94500 0.90662 0.96620 0.87687 0.95466 0.92292 0.77827 0.76264 0.85875 0.85386 0.85587 0.85184 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.09 37.16 0.30 -2.88 16 2 C -0.12 -2.84 5.45 -26.73 -0.15 -2.98 16 3 C 0.26 6.22 2.20 -69.09 -0.15 6.07 16 4 H 0.08 2.29 6.82 -51.92 -0.35 1.93 16 5 C -0.55 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.75 16 8 N -0.87 -23.64 11.30 55.43 0.63 -23.01 16 9 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 10 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 13 N -0.64 -12.21 5.03 -56.66 -0.28 -12.50 16 14 C 0.50 9.69 6.68 -86.92 -0.58 9.11 16 15 S -0.53 -12.70 20.35 -107.50 -2.19 -14.89 16 16 N -0.65 -9.53 5.19 -13.80 -0.07 -9.60 16 17 C 0.53 8.24 7.70 -12.36 -0.10 8.15 16 18 O -0.41 -8.09 13.10 5.35 0.07 -8.02 16 19 C -0.13 -1.50 5.87 -104.97 -0.62 -2.12 16 20 C -0.09 -0.81 9.54 -39.18 -0.37 -1.19 16 21 C -0.13 -0.93 10.03 -39.64 -0.40 -1.33 16 22 C -0.10 -0.70 10.04 -39.49 -0.40 -1.10 16 23 C -0.13 -1.03 10.03 -39.64 -0.40 -1.43 16 24 C -0.06 -0.62 9.60 -39.18 -0.38 -1.00 16 25 H 0.04 0.82 5.29 -44.24 -0.23 0.59 16 26 H 0.07 1.85 6.49 -47.94 -0.31 1.54 16 27 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.11 2.75 5.95 -51.93 -0.31 2.44 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.39 6.11 8.55 -40.82 -0.35 5.76 16 32 H 0.40 4.07 6.74 -40.82 -0.28 3.79 16 33 H 0.12 0.81 6.41 -52.49 -0.34 0.47 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 LS Contribution 315.47 15.07 4.75 4.75 Total: -1.00 -32.40 315.47 -9.97 -42.36 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.23 Total: 8.94 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.63 Total: -2.90 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 0.27 Total: -45.11 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.07 Total: -8.02 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: -12.70 SS G_CDS: -2.19 Total: -14.89 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.40 -9.97 -42.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195437898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.000 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds