Wall clock time and date at job start Tue Mar 31 2020 06:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47571 * 2 1 4 4 H 1.09007 * 109.46875 * 305.00272 * 3 2 1 5 5 C 1.50691 * 109.47283 * 185.00133 * 3 2 1 6 6 H 1.07997 * 119.99993 * 239.99936 * 5 3 2 7 7 C 1.37878 * 120.00443 * 59.99753 * 5 3 2 8 8 N 1.31521 * 119.99732 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00505 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46841 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.47025 * 120.00030 * 9 7 5 12 12 H 1.48499 * 109.47478 * 240.00283 * 9 7 5 13 13 N 1.46499 * 109.47022 * 64.99856 * 3 2 1 14 14 C 1.34784 * 119.99971 * 275.00268 * 13 3 2 15 15 S 1.71195 * 120.00082 * 359.97438 * 14 13 3 16 16 N 1.34771 * 119.99547 * 180.02562 * 14 13 3 17 17 C 1.34784 * 119.99547 * 180.02562 * 16 14 13 18 18 O 1.21521 * 120.00030 * 359.97438 * 17 16 14 19 19 C 1.47776 * 119.99796 * 179.97438 * 17 16 14 20 20 C 1.39609 * 120.14536 * 359.72551 * 19 17 16 21 21 C 1.37951 * 119.84368 * 179.78653 * 20 19 17 22 22 C 1.38360 * 120.15272 * 0.46659 * 21 20 19 23 23 C 1.38373 * 120.29512 * 359.78680 * 22 21 20 24 24 C 1.37945 * 120.15169 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.46704 * 300.00428 * 1 2 3 26 26 H 1.08997 * 109.46933 * 59.99931 * 1 2 3 27 27 H 1.08996 * 109.47301 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46704 * 239.99572 * 2 1 3 29 29 H 1.09003 * 109.46624 * 120.00390 * 2 1 3 30 30 H 0.96996 * 120.00362 * 180.02562 * 8 7 5 31 31 H 0.96999 * 119.99984 * 95.00421 * 13 3 2 32 32 H 0.96995 * 120.00382 * 0.27138 * 16 14 13 33 33 H 1.08001 * 120.07875 * 359.97438 * 20 19 17 34 34 H 1.08004 * 119.92629 * 180.22734 * 21 20 19 35 35 H 1.07997 * 119.85580 * 179.76102 * 22 21 20 36 36 H 1.08006 * 119.92293 * 179.97438 * 23 22 21 37 37 H 1.07997 * 120.07485 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4441 -0.1239 6 1 4.1472 1.8887 0.6522 7 6 4.1434 0.8782 -1.2280 8 7 3.4062 0.3372 -2.1734 9 14 6.0050 0.8810 -1.3818 10 1 6.5988 1.5460 -0.1943 11 1 6.4970 -0.5178 -1.4630 12 1 6.3991 1.6164 -2.6103 13 7 1.6526 2.0974 1.2518 14 6 0.4352 2.6644 1.3669 15 16 -0.6579 2.6197 0.0501 16 7 0.0790 3.2674 2.5184 17 6 -1.1386 3.8339 2.6337 18 8 -1.9148 3.8014 1.6993 19 6 -1.5295 4.4946 3.8964 20 6 -0.6422 4.5287 4.9737 21 6 -1.0119 5.1510 6.1481 22 6 -2.2623 5.7320 6.2630 23 6 -3.1485 5.6971 5.2008 24 6 -2.7898 5.0824 4.0191 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0613 -2.9499 31 1 2.2721 2.1231 1.9977 32 1 0.7000 3.2968 3.2628 33 1 0.3325 4.0717 4.8869 34 1 -0.3251 5.1814 6.9811 35 1 -2.5482 6.2145 7.1859 36 1 -4.1232 6.1522 5.2973 37 1 -3.4826 5.0556 3.1911 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195437898.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:00 Heat of formation + Delta-G solvation = 8.823487 kcal Electronic energy + Delta-G solvation = -20533.649787 eV Core-core repulsion = 17402.370307 eV Total energy + Delta-G solvation = -3131.279480 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.99839 -39.86725 -39.00231 -36.70066 -34.55948 -32.97468 -32.12461 -31.87068 -29.30814 -26.42981 -24.91189 -24.32220 -23.39163 -22.72756 -21.60829 -20.35481 -19.10518 -18.03670 -17.62837 -17.05190 -16.83101 -16.59469 -16.24305 -15.76493 -15.52255 -15.23604 -14.88144 -14.62889 -14.35488 -13.84481 -13.60515 -13.22071 -13.12664 -12.84910 -12.71905 -12.66519 -12.27715 -12.19174 -12.08573 -12.03096 -11.64258 -11.47347 -11.08489 -10.75189 -10.36038 -9.97740 -9.95013 -8.65273 -8.18163 -7.44976 -6.36432 -0.34869 0.24737 0.41540 0.89724 1.44073 1.45340 1.50550 1.58171 1.82070 2.36761 2.64716 2.87996 3.12537 3.43935 3.87396 4.00494 4.24628 4.45709 4.50130 4.52629 4.59412 4.62888 4.74409 4.82834 5.04651 5.07631 5.13951 5.30805 5.36101 5.43796 5.51099 5.53038 5.59579 5.83983 5.84357 5.88872 5.95371 6.13754 6.44622 6.73354 6.89669 7.33209 8.87116 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026836 B = 0.003756 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.136668 B = 7452.035939 C = 8132.565430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.112 4.112 3 C 0.271 3.729 4 H 0.039 0.961 5 C -0.554 4.554 6 H 0.077 0.923 7 C 0.021 3.979 8 N -0.907 5.907 9 Si 0.972 3.028 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.286 1.286 13 N -0.623 5.623 14 C 0.537 3.463 15 S -0.637 6.637 16 N -0.629 5.629 17 C 0.530 3.470 18 O -0.458 6.458 19 C -0.151 4.151 20 C -0.089 4.089 21 C -0.124 4.124 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.077 4.077 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.029 0.971 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.266 0.734 31 H 0.410 0.590 32 H 0.427 0.573 33 H 0.147 0.853 34 H 0.162 0.838 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 9.012 22.125 24.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.169 3.831 4 H 0.057 0.943 5 C -0.592 4.592 6 H 0.095 0.905 7 C -0.180 4.180 8 N -0.545 5.545 9 Si 0.797 3.203 10 H -0.182 1.182 11 H -0.205 1.205 12 H -0.213 1.213 13 N -0.248 5.248 14 C 0.178 3.822 15 S -0.508 6.508 16 N -0.277 5.277 17 C 0.315 3.685 18 O -0.326 6.326 19 C -0.155 4.155 20 C -0.108 4.108 21 C -0.142 4.142 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.096 4.096 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.249 0.751 32 H 0.269 0.731 33 H 0.165 0.835 34 H 0.179 0.821 35 H 0.178 0.822 36 H 0.170 0.830 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.894 8.816 20.347 22.944 hybrid contribution 1.821 -0.235 0.420 1.884 sum -4.073 8.581 20.766 22.836 Atomic orbital electron populations 1.22119 0.96565 0.97887 1.01635 1.21763 0.93793 0.97948 1.01602 1.19055 0.94289 0.89882 0.79916 0.94304 1.21478 0.90463 1.40024 1.07267 0.90543 1.25711 1.03224 0.94218 0.94891 1.70061 1.37067 1.37613 1.09728 0.85299 0.78996 0.77791 0.78239 1.18248 1.20533 1.21262 1.45851 1.10740 1.49081 1.19083 1.21946 0.88477 0.82172 0.89572 1.93367 1.50707 1.75717 1.30971 1.42928 1.18943 1.52108 1.13727 1.19181 0.80804 0.79194 0.89308 1.91291 1.50434 1.52471 1.38449 1.19805 0.97889 1.04933 0.92881 1.21603 0.98992 0.97773 0.92386 1.21531 0.97583 0.97303 0.97761 1.21867 0.93107 0.96145 0.99310 1.21457 1.01545 0.99364 0.92229 1.21377 0.94462 0.94834 0.98921 0.94354 0.93317 0.95243 0.90356 0.94108 0.92421 0.75140 0.73082 0.83537 0.82057 0.82221 0.83046 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.09 71.98 0.58 -5.20 16 2 C -0.11 -5.35 5.45 30.59 0.17 -5.18 16 3 C 0.27 13.07 2.20 44.24 0.10 13.17 16 4 H 0.04 2.26 6.82 -2.38 -0.02 2.25 16 5 C -0.55 -27.36 8.73 25.60 0.22 -27.14 16 6 H 0.08 3.46 7.74 -2.91 -0.02 3.43 16 7 C 0.02 1.08 5.29 84.65 0.45 1.53 16 8 N -0.91 -50.33 11.30 21.45 0.24 -50.09 16 9 Si 0.97 40.29 29.54 68.60 2.03 42.31 16 10 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 11 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 12 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.62 -23.34 5.03 -333.16 -1.67 -25.02 16 14 C 0.54 20.75 6.68 179.05 1.20 21.94 16 15 S -0.64 -32.14 20.35 -56.49 -1.15 -33.29 16 16 N -0.63 -17.71 5.19 -315.85 -1.64 -19.35 16 17 C 0.53 16.57 7.70 86.76 0.67 17.23 16 18 O -0.46 -19.16 13.10 -3.78 -0.05 -19.21 16 19 C -0.15 -3.36 5.87 -20.09 -0.12 -3.48 16 20 C -0.09 -1.26 9.54 22.53 0.21 -1.04 16 21 C -0.12 -1.22 10.03 22.23 0.22 -1.00 16 22 C -0.09 -0.84 10.04 22.33 0.22 -0.61 16 23 C -0.13 -1.76 10.03 22.23 0.22 -1.54 16 24 C -0.08 -1.62 9.60 22.53 0.22 -1.40 16 25 H 0.04 1.74 5.29 -7.28 -0.04 1.70 16 26 H 0.05 2.54 6.49 -4.92 -0.03 2.50 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.08 4.23 5.95 -2.39 -0.01 4.21 16 29 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 31 H 0.41 11.83 8.55 -92.71 -0.79 11.04 16 32 H 0.43 7.40 6.74 -92.71 -0.63 6.77 16 33 H 0.15 1.25 6.41 -2.91 -0.02 1.24 16 34 H 0.16 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 36 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.12 2.90 7.65 -2.91 -0.02 2.88 16 Total: -1.00 -75.82 315.47 1.78 -74.05 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.34 Total: 23.31 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: 4.36 Total: 7.27 kcal Atomic # 7 Polarization: -91.38 SS G_CDS: -3.07 Total: -94.45 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.05 Total: -19.21 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.31 kcal Atomic # 16 Polarization: -32.14 SS G_CDS: -1.15 Total: -33.29 kcal Total: -75.82 1.78 -74.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195437898.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.869 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds