Wall clock time and date at job start Tue Mar 31 2020 06:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47072 * 2 1 4 4 H 1.08999 * 109.47213 * 54.44458 * 3 2 1 5 5 C 1.50697 * 109.47322 * 174.44895 * 3 2 1 6 6 H 1.08001 * 119.99785 * 84.77246 * 5 3 2 7 7 C 1.37877 * 119.99907 * 264.77896 * 5 3 2 8 8 N 1.31515 * 119.99798 * 181.00046 * 7 5 3 9 9 Si 1.86793 * 120.00231 * 1.00110 * 7 5 3 10 10 H 1.48501 * 109.47347 * 270.01237 * 9 7 5 11 11 H 1.48498 * 109.47301 * 30.00890 * 9 7 5 12 12 H 1.48500 * 109.47455 * 150.01045 * 9 7 5 13 13 N 1.46498 * 109.46881 * 294.45133 * 3 2 1 14 14 C 1.34776 * 120.00376 * 84.99886 * 13 3 2 15 15 S 1.71198 * 119.99822 * 0.02562 * 14 13 3 16 16 N 1.34776 * 120.00046 * 179.97438 * 14 13 3 17 17 C 1.34776 * 120.00046 * 180.02562 * 16 14 13 18 18 O 1.21528 * 119.99952 * 0.02562 * 17 16 14 19 19 C 1.47773 * 120.00135 * 180.02562 * 17 16 14 20 20 C 1.39611 * 120.14691 * 359.72334 * 19 17 16 21 21 C 1.37949 * 119.84421 * 179.76370 * 20 19 17 22 22 C 1.38365 * 120.15285 * 0.49475 * 21 20 19 23 23 C 1.38363 * 120.29753 * 359.75756 * 22 21 20 24 24 C 1.37951 * 120.14858 * 0.02562 * 23 22 21 25 25 H 1.08996 * 109.47467 * 300.00157 * 1 2 3 26 26 H 1.08999 * 109.47294 * 60.00338 * 1 2 3 27 27 H 1.09004 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47467 * 239.99843 * 2 1 3 29 29 H 1.09004 * 109.46856 * 119.99736 * 2 1 3 30 30 H 0.97001 * 120.00077 * 179.97438 * 8 7 5 31 31 H 0.97003 * 119.99820 * 265.00190 * 13 3 2 32 32 H 0.96998 * 120.00231 * 359.97438 * 16 14 13 33 33 H 1.08002 * 120.07555 * 359.97438 * 20 19 17 34 34 H 1.08003 * 119.92093 * 180.23226 * 21 20 19 35 35 H 1.07994 * 119.84788 * 179.74381 * 22 21 20 36 36 H 1.07994 * 119.92881 * 179.97438 * 23 22 21 37 37 H 1.08006 * 120.07263 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9843 0.8360 5 6 3.5407 1.4448 0.1374 6 1 4.1632 1.3304 -0.7376 7 6 4.1189 1.5928 1.3803 8 7 5.4286 1.6145 1.4979 9 14 3.0421 1.7624 2.8972 10 1 2.7478 3.1980 3.1375 11 1 1.7704 1.0251 2.6865 12 1 3.7518 1.1989 4.0737 13 7 1.6637 2.0934 -1.2573 14 6 0.4475 2.6599 -1.3854 15 16 -0.6575 2.6194 -0.0784 16 7 0.1016 3.2592 -2.5420 17 6 -1.1144 3.8261 -2.6698 18 8 -1.8988 3.7974 -1.7420 19 6 -1.4939 4.4827 -3.9381 20 6 -0.5930 4.5225 -5.0040 21 6 -0.9556 5.1328 -6.1868 22 6 -2.2050 5.7135 -6.3148 23 6 -3.1006 5.6821 -5.2606 24 6 -2.7526 5.0713 -4.0737 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 5.8354 1.7190 2.3722 31 1 2.2899 2.1167 -1.9978 32 1 0.7281 3.2831 -3.2821 33 1 0.3841 4.0737 -4.9038 34 1 -0.2611 5.1611 -7.0134 35 1 -2.4821 6.1936 -7.2416 36 1 -4.0740 6.1376 -5.3669 37 1 -3.4525 5.0479 -3.2515 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195437900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:02 Heat of formation + Delta-G solvation = 6.066112 kcal Electronic energy + Delta-G solvation = -20617.884929 eV Core-core repulsion = 17486.485880 eV Total energy + Delta-G solvation = -3131.399049 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.02302 -39.91714 -39.06234 -36.71841 -34.60763 -33.35478 -32.16204 -31.87781 -29.75515 -26.46587 -24.72438 -24.32503 -23.41228 -22.79629 -21.60080 -20.48410 -19.16717 -18.53563 -17.63231 -17.19336 -16.81031 -16.64630 -16.24406 -15.80539 -15.55472 -15.34891 -14.88430 -14.79636 -14.36809 -13.92027 -13.79618 -13.69520 -13.26904 -12.93629 -12.78237 -12.59634 -12.39811 -12.27663 -12.03944 -11.86285 -11.72677 -11.56730 -11.20269 -10.96804 -10.54417 -9.98697 -9.95675 -8.71753 -8.45511 -7.52492 -6.53554 -0.37182 0.21185 0.40922 0.83522 1.28170 1.37331 1.44224 1.50991 1.80421 2.25432 2.48293 2.87207 3.00972 3.42410 3.86686 3.99731 4.23734 4.31539 4.41176 4.45096 4.47386 4.50720 4.60042 4.80843 4.85694 5.04023 5.07882 5.20120 5.23187 5.29306 5.34603 5.42291 5.50446 5.52426 5.72015 5.89535 5.95161 6.06426 6.34533 6.55688 6.85447 7.16232 8.68093 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.026985 B = 0.004035 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.382019 B = 6936.847993 C = 7341.697940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C 0.235 3.765 4 H 0.061 0.939 5 C -0.530 4.530 6 H 0.065 0.935 7 C 0.047 3.953 8 N -0.920 5.920 9 Si 0.912 3.088 10 H -0.279 1.279 11 H -0.246 1.246 12 H -0.277 1.277 13 N -0.621 5.621 14 C 0.537 3.463 15 S -0.636 6.636 16 N -0.629 5.629 17 C 0.531 3.469 18 O -0.455 6.455 19 C -0.151 4.151 20 C -0.089 4.089 21 C -0.125 4.125 22 C -0.086 4.086 23 C -0.128 4.128 24 C -0.076 4.076 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.273 0.727 31 H 0.411 0.589 32 H 0.427 0.573 33 H 0.146 0.854 34 H 0.161 0.839 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.302 6.612 -20.000 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.131 3.869 4 H 0.079 0.921 5 C -0.569 4.569 6 H 0.083 0.917 7 C -0.155 4.155 8 N -0.558 5.558 9 Si 0.737 3.263 10 H -0.205 1.205 11 H -0.169 1.169 12 H -0.203 1.203 13 N -0.247 5.247 14 C 0.178 3.822 15 S -0.507 6.507 16 N -0.277 5.277 17 C 0.316 3.684 18 O -0.324 6.324 19 C -0.155 4.155 20 C -0.108 4.108 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.095 4.095 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.270 0.730 33 H 0.164 0.836 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.170 0.830 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.352 6.523 -18.280 23.006 hybrid contribution 1.127 0.070 -0.047 1.130 sum -11.226 6.593 -18.327 22.480 Atomic orbital electron populations 1.22200 0.95509 0.99124 1.02384 1.21966 0.95001 0.96639 1.01790 1.19497 0.93938 0.91056 0.82373 0.92081 1.21066 0.89407 1.51351 0.95050 0.91726 1.25440 0.95583 0.93248 1.01279 1.69937 1.10707 1.49389 1.25746 0.86254 0.80554 0.79341 0.80199 1.20477 1.16934 1.20270 1.46033 1.10630 1.49198 1.18805 1.22031 0.88542 0.82033 0.89558 1.93313 1.50145 1.75827 1.31398 1.42960 1.18978 1.52100 1.13692 1.19149 0.80809 0.79139 0.89269 1.91287 1.49803 1.52363 1.38935 1.19794 0.97825 1.05015 0.92897 1.21605 0.98890 0.97791 0.92505 1.21529 0.97658 0.97419 0.97645 1.21863 0.93066 0.96069 0.99428 1.21457 1.01510 0.99405 0.92245 1.21382 0.94564 0.94729 0.98821 0.92988 0.93700 0.93844 0.91744 0.92215 0.91779 0.74998 0.73030 0.83597 0.82171 0.82281 0.83037 0.85990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 8.09 71.98 0.58 -4.77 16 2 C -0.11 -4.67 5.47 30.59 0.17 -4.50 16 3 C 0.23 10.32 1.76 44.24 0.08 10.40 16 4 H 0.06 3.03 4.13 -2.39 -0.01 3.02 16 5 C -0.53 -26.74 9.05 25.60 0.23 -26.51 16 6 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 7 C 0.05 2.53 5.47 84.65 0.46 3.00 16 8 N -0.92 -52.68 13.96 21.45 0.30 -52.38 16 9 Si 0.91 43.77 26.71 68.60 1.83 45.60 16 10 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 11 H -0.25 -11.63 6.64 99.48 0.66 -10.97 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 N -0.62 -22.10 5.03 -333.16 -1.68 -23.78 16 14 C 0.54 19.52 6.70 179.05 1.20 20.72 16 15 S -0.64 -29.79 20.35 -56.49 -1.15 -30.94 16 16 N -0.63 -16.86 5.19 -315.86 -1.64 -18.50 16 17 C 0.53 15.83 7.70 86.77 0.67 16.50 16 18 O -0.46 -18.13 13.10 -3.80 -0.05 -18.18 16 19 C -0.15 -3.24 5.87 -20.09 -0.12 -3.36 16 20 C -0.09 -1.24 9.54 22.53 0.21 -1.02 16 21 C -0.12 -1.22 10.03 22.23 0.22 -0.99 16 22 C -0.09 -0.82 10.04 22.33 0.22 -0.59 16 23 C -0.13 -1.70 10.03 22.23 0.22 -1.47 16 24 C -0.08 -1.54 9.60 22.53 0.22 -1.32 16 25 H 0.05 2.33 6.54 -4.30 -0.03 2.30 16 26 H 0.04 1.80 5.26 -7.92 -0.04 1.76 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.06 2.53 7.77 -2.38 -0.02 2.51 16 30 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 31 H 0.41 11.69 8.61 -92.71 -0.80 10.89 16 32 H 0.43 7.09 6.74 -92.71 -0.63 6.47 16 33 H 0.15 1.23 6.41 -2.91 -0.02 1.21 16 34 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 35 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 36 H 0.15 1.28 8.06 -2.91 -0.02 1.25 16 37 H 0.12 2.79 7.65 -2.91 -0.02 2.77 16 Total: -1.00 -75.34 314.47 1.60 -73.74 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -0.39 Total: 18.36 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.37 Total: 6.07 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -3.02 Total: -94.66 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.83 Total: 45.60 kcal Atomic # 16 Polarization: -29.79 SS G_CDS: -1.15 Total: -30.94 kcal Total: -75.34 1.60 -73.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195437900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.803 kcal (2) G-P(sol) polarization free energy of solvation -75.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds