Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48494 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47253 * 299.99847 * 3 2 1 6 6 H 1.48507 * 109.47144 * 59.99996 * 3 2 1 7 7 C 1.38627 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99899 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.35690 * 116.99834 * 185.06923 * 9 7 2 11 11 C 1.38700 * 120.12076 * 354.40871 * 10 9 7 12 12 C 1.38339 * 120.02644 * 180.29553 * 11 10 9 13 13 F 1.35103 * 119.87490 * 179.97438 * 12 11 10 14 14 C 1.38635 * 120.25715 * 359.95571 * 12 11 10 15 15 C 1.38017 * 120.23686 * 0.04261 * 14 12 11 16 16 C 1.39217 * 119.97352 * 359.97438 * 15 14 12 17 17 C 1.48429 * 120.13174 * 179.97438 * 16 15 14 18 18 C 1.40861 * 126.22757 * 130.03870 * 17 16 15 19 19 N 1.30679 * 108.11349 * 179.97438 * 18 17 16 20 20 N 1.40015 * 108.53181 * 0.02562 * 19 18 17 21 21 C 1.46501 * 125.89652 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47140 * 304.97561 * 21 20 19 23 23 O 1.42894 * 109.47067 * 179.97438 * 22 21 20 24 24 C 1.34899 * 108.20644 * 359.75186 * 20 19 18 25 25 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.98689 * 0.27575 * 11 10 9 27 27 H 1.08007 * 119.88457 * 180.02562 * 14 12 11 28 28 H 1.08008 * 120.01947 * 179.97438 * 15 14 12 29 29 H 1.08000 * 125.94417 * 359.95004 * 18 17 16 30 30 H 1.09000 * 109.47128 * 64.97373 * 21 20 19 31 31 H 1.08995 * 109.46931 * 184.97532 * 21 20 19 32 32 H 1.09000 * 109.46956 * 299.99917 * 22 21 20 33 33 H 1.09000 * 109.46776 * 60.00030 * 22 21 20 34 34 H 0.96704 * 114.00446 * 179.97438 * 23 22 21 35 35 H 1.08001 * 126.20208 * 180.24523 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8909 2.3965 1.2126 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0699 -3.5036 0.1079 11 6 3.4553 -3.4399 0.0947 12 6 4.2027 -4.5994 0.1981 13 9 5.5521 -4.5338 0.1844 14 6 3.5724 -5.8285 0.3162 15 6 2.1944 -5.9044 0.3306 16 6 1.4328 -4.7437 0.2267 17 6 -0.0494 -4.8213 0.2412 18 6 -0.9152 -4.0577 1.0484 19 7 -2.1432 -4.4109 0.7744 20 7 -2.1109 -5.4061 -0.2099 21 6 -3.2765 -6.0718 -0.7969 22 6 -4.1314 -6.6795 0.3169 23 8 -5.2686 -7.3282 -0.2556 24 6 -0.8215 -5.6419 -0.5288 25 1 -0.4850 0.8400 -0.0004 26 1 3.9509 -2.4846 0.0033 27 1 4.1618 -6.7300 0.3970 28 1 1.7070 -6.8639 0.4223 29 1 -0.6161 -3.3106 1.7687 30 1 -3.8681 -5.3448 -1.3534 31 1 -2.9430 -6.8610 -1.4707 32 1 -3.5398 -7.4064 0.8734 33 1 -4.4648 -5.8901 0.9907 34 1 -5.8564 -7.7375 0.3940 35 1 -0.4648 -6.3527 -1.2594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206562111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -16.755890 kcal Electronic energy + Delta-G solvation = -22390.344046 eV Core-core repulsion = 18691.742185 eV Total energy + Delta-G solvation = -3698.601861 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.26989 -40.71848 -38.89400 -37.22477 -36.30890 -33.40142 -32.36492 -31.08597 -29.28778 -29.11587 -27.03637 -25.42607 -23.40475 -22.21893 -21.76596 -20.13961 -19.79745 -18.25178 -17.94906 -17.37251 -16.31558 -15.76277 -15.45854 -15.20713 -14.98913 -14.90546 -14.45370 -14.23092 -13.80238 -13.65766 -13.35899 -13.25630 -13.05886 -12.60132 -12.24008 -12.15371 -11.78928 -11.66400 -11.32450 -11.22065 -10.80533 -10.69103 -10.46612 -10.31915 -10.08542 -9.58519 -8.95190 -8.92165 -8.50261 -7.80953 -7.09980 -6.52532 -4.11442 1.76537 2.17145 2.37709 2.69036 3.09335 3.11650 3.16964 3.43357 3.90642 4.08188 4.37842 4.66556 4.88866 4.89817 5.01558 5.12019 5.20583 5.23943 5.30893 5.52794 5.61157 5.65169 5.74444 5.91095 6.08022 6.17912 6.43827 6.49803 6.80487 6.87768 6.95649 7.08841 7.22710 7.27063 7.30847 7.42312 7.66849 7.90531 8.20024 8.91852 9.58074 10.63276 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005164 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.215420 B = 5420.424130 C = 7540.414872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.939 3.061 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.397 4.397 8 H 0.094 0.906 9 O -0.153 6.153 10 C 0.183 3.817 11 C -0.271 4.271 12 C 0.138 3.862 13 F -0.153 7.153 14 C -0.247 4.247 15 C -0.042 4.042 16 C -0.094 4.094 17 C -0.158 4.158 18 C 0.096 3.904 19 N -0.305 5.305 20 N -0.383 5.383 21 C 0.143 3.857 22 C 0.067 3.933 23 O -0.574 6.574 24 C 0.050 3.950 25 H 0.271 0.729 26 H 0.139 0.861 27 H 0.118 0.882 28 H 0.121 0.879 29 H 0.184 0.816 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.386 0.614 35 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 -12.007 0.539 12.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.161 4.161 3 Si 0.764 3.236 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.111 0.889 9 O -0.055 6.055 10 C 0.127 3.873 11 C -0.291 4.291 12 C 0.119 3.881 13 F -0.132 7.132 14 C -0.267 4.267 15 C -0.061 4.061 16 C -0.097 4.097 17 C -0.169 4.169 18 C -0.091 4.091 19 N -0.125 5.125 20 N -0.167 5.167 21 C 0.020 3.980 22 C -0.012 4.012 23 O -0.379 6.379 24 C -0.094 4.094 25 H 0.081 0.919 26 H 0.157 0.843 27 H 0.136 0.864 28 H 0.139 0.861 29 H 0.201 0.799 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.233 0.767 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -4.854 -11.442 0.151 12.430 hybrid contribution 1.502 0.623 0.229 1.642 sum -3.352 -10.819 0.380 11.333 Atomic orbital electron populations 1.70064 1.05862 1.27781 1.44651 1.25283 0.95826 0.98808 0.96215 0.85666 0.79284 0.80319 0.78334 1.18989 1.20110 1.20026 1.21426 0.91945 0.80751 1.53135 0.88899 1.84018 1.33766 1.11159 1.76522 1.19000 0.88832 0.87850 0.91630 1.20980 0.94154 0.98246 1.15731 1.17497 0.75780 0.94419 1.00403 1.91411 1.30365 1.97396 1.94016 1.20430 0.94979 0.95644 1.15653 1.20481 0.92130 0.96490 0.96964 1.17172 0.89925 0.90581 1.11980 1.18593 0.92706 1.02676 1.02927 1.24004 0.88822 0.97606 0.98676 1.77187 1.22039 1.05799 1.07465 1.48111 1.04586 1.31240 1.32722 1.21202 0.85335 0.96843 0.94595 1.22329 0.87268 0.96375 0.95240 1.86354 1.37734 1.75303 1.38539 1.22398 0.83693 1.02202 1.01121 0.91907 0.84323 0.86374 0.86084 0.79878 0.89400 0.88367 0.93139 0.91875 0.76692 0.81294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.95 13.67 55.48 0.76 -23.19 16 2 C 0.04 1.18 5.49 -17.52 -0.10 1.08 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.40 -10.59 9.49 30.88 0.29 -10.30 16 8 H 0.09 2.33 5.21 -52.48 -0.27 2.06 16 9 O -0.15 -4.08 8.66 0.28 0.00 -4.08 16 10 C 0.18 4.21 6.63 -38.78 -0.26 3.95 16 11 C -0.27 -5.86 9.14 -39.37 -0.36 -6.22 16 12 C 0.14 2.68 7.29 -39.40 -0.29 2.39 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.84 16 14 C -0.25 -4.23 10.01 -39.52 -0.40 -4.62 16 15 C -0.04 -0.70 9.70 -39.30 -0.38 -1.09 16 16 C -0.09 -1.87 5.77 -104.70 -0.60 -2.47 16 17 C -0.16 -3.04 5.31 -105.35 -0.56 -3.59 16 18 C 0.10 1.96 11.30 -17.05 -0.19 1.77 16 19 N -0.30 -5.89 12.38 30.81 0.38 -5.51 16 20 N -0.38 -6.15 3.67 -61.08 -0.22 -6.38 16 21 C 0.14 1.74 6.87 -4.04 -0.03 1.71 16 22 C 0.07 0.72 7.23 37.16 0.27 0.98 16 23 O -0.57 -5.51 13.66 -35.23 -0.48 -5.99 16 24 C 0.05 0.81 11.32 -16.84 -0.19 0.62 16 25 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.14 3.04 5.64 -52.48 -0.30 2.75 16 27 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 28 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.18 3.87 8.06 -52.49 -0.42 3.45 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 0.95 8.07 -51.93 -0.42 0.54 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.39 1.91 9.12 45.56 0.42 2.32 16 35 H 0.17 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -31.47 318.71 -5.20 -36.67 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -2.67 Total: 7.30 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -2.79 Total: -15.78 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: 0.92 Total: -35.09 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: -0.48 Total: -10.07 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.84 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.47 -5.20 -36.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206562111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.914 kcal (2) G-P(sol) polarization free energy of solvation -31.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds