Wall clock time and date at job start Tue Mar 31 2020 06:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86805 * 119.99720 * 2 1 4 4 H 1.48494 * 109.46944 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47253 * 299.99847 * 3 2 1 6 6 H 1.48507 * 109.47144 * 59.99996 * 3 2 1 7 7 C 1.38627 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99899 * 180.02562 * 7 2 1 9 9 O 1.34814 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.35690 * 116.99834 * 185.06923 * 9 7 2 11 11 C 1.38700 * 120.12076 * 354.40871 * 10 9 7 12 12 C 1.38339 * 120.02644 * 180.29553 * 11 10 9 13 13 F 1.35103 * 119.87490 * 179.97438 * 12 11 10 14 14 C 1.38635 * 120.25715 * 359.95571 * 12 11 10 15 15 C 1.38017 * 120.23686 * 0.04261 * 14 12 11 16 16 C 1.39217 * 119.97352 * 359.97438 * 15 14 12 17 17 C 1.48429 * 120.13174 * 179.97438 * 16 15 14 18 18 C 1.40861 * 126.22757 * 130.03870 * 17 16 15 19 19 N 1.30679 * 108.11349 * 179.97438 * 18 17 16 20 20 N 1.40015 * 108.53181 * 0.02562 * 19 18 17 21 21 C 1.46501 * 125.89652 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47140 * 304.97561 * 21 20 19 23 23 O 1.42894 * 109.47067 * 179.97438 * 22 21 20 24 24 C 1.34899 * 108.20644 * 359.75186 * 20 19 18 25 25 H 0.96998 * 120.00120 * 0.02562 * 1 2 3 26 26 H 1.08006 * 119.98689 * 0.27575 * 11 10 9 27 27 H 1.08007 * 119.88457 * 180.02562 * 14 12 11 28 28 H 1.08008 * 120.01947 * 179.97438 * 15 14 12 29 29 H 1.08000 * 125.94417 * 359.95004 * 18 17 16 30 30 H 1.09000 * 109.47128 * 64.97373 * 21 20 19 31 31 H 1.08995 * 109.46931 * 184.97532 * 21 20 19 32 32 H 1.09000 * 109.46956 * 299.99917 * 22 21 20 33 33 H 1.09000 * 109.46776 * 60.00030 * 22 21 20 34 34 H 0.96704 * 114.00446 * 179.97438 * 23 22 21 35 35 H 1.08001 * 126.20208 * 180.24523 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 3.7097 1.3465 0.0006 5 1 1.8910 2.3965 -1.2125 6 1 1.8909 2.3965 1.2126 7 6 2.0089 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0699 -3.5036 0.1079 11 6 3.4553 -3.4399 0.0947 12 6 4.2027 -4.5994 0.1981 13 9 5.5521 -4.5338 0.1844 14 6 3.5724 -5.8285 0.3162 15 6 2.1944 -5.9044 0.3306 16 6 1.4328 -4.7437 0.2267 17 6 -0.0494 -4.8213 0.2412 18 6 -0.9152 -4.0577 1.0484 19 7 -2.1432 -4.4109 0.7744 20 7 -2.1109 -5.4061 -0.2099 21 6 -3.2765 -6.0718 -0.7969 22 6 -4.1314 -6.6795 0.3169 23 8 -5.2686 -7.3282 -0.2556 24 6 -0.8215 -5.6419 -0.5288 25 1 -0.4850 0.8400 -0.0004 26 1 3.9509 -2.4846 0.0033 27 1 4.1618 -6.7300 0.3970 28 1 1.7070 -6.8639 0.4223 29 1 -0.6161 -3.3106 1.7687 30 1 -3.8681 -5.3448 -1.3534 31 1 -2.9430 -6.8610 -1.4707 32 1 -3.5398 -7.4064 0.8734 33 1 -4.4648 -5.8901 0.9907 34 1 -5.8564 -7.7375 0.3940 35 1 -0.4648 -6.3527 -1.2594 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206562111.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:14 Heat of formation + Delta-G solvation = -38.989822 kcal Electronic energy + Delta-G solvation = -22391.308182 eV Core-core repulsion = 18691.742185 eV Total energy + Delta-G solvation = -3699.565997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.78987 -42.10161 -40.55061 -38.09449 -37.89097 -34.58724 -34.26567 -32.56506 -30.85660 -30.36327 -28.42187 -27.30178 -24.51894 -23.67916 -23.36020 -21.44147 -21.23579 -20.01389 -19.20163 -18.72020 -17.53750 -17.08708 -16.88556 -16.73103 -16.52740 -16.16523 -15.91952 -15.64727 -15.38944 -15.14667 -14.87272 -14.66561 -14.40101 -14.06920 -13.70551 -13.52153 -13.21483 -13.00223 -12.83904 -12.49949 -12.35041 -12.22515 -12.10584 -11.60923 -11.39404 -11.03018 -10.80751 -10.32160 -9.97501 -9.37160 -8.65225 -8.46078 -6.13269 0.24598 0.62395 1.00371 1.35256 1.41866 1.51842 1.53084 1.91978 2.16297 2.76575 3.11364 3.22453 3.33500 3.58310 3.73265 3.98472 4.02372 4.06930 4.13470 4.25621 4.28511 4.42176 4.53425 4.56362 4.72696 4.88967 4.98395 5.02701 5.14066 5.30523 5.36300 5.43990 5.67440 5.73093 5.99822 6.13876 6.19154 6.74495 6.79187 6.97877 7.76030 8.74195 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.012239 B = 0.005164 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.215420 B = 5420.424130 C = 7540.414872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C -0.011 4.011 3 Si 1.010 2.990 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.416 4.416 8 H 0.096 0.904 9 O -0.198 6.198 10 C 0.151 3.849 11 C -0.285 4.285 12 C 0.126 3.874 13 F -0.150 7.150 14 C -0.216 4.216 15 C -0.028 4.028 16 C -0.091 4.091 17 C -0.192 4.192 18 C 0.072 3.928 19 N -0.329 5.329 20 N -0.372 5.372 21 C 0.132 3.868 22 C 0.077 3.923 23 O -0.581 6.581 24 C 0.077 3.923 25 H 0.271 0.729 26 H 0.123 0.877 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.156 0.844 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.061 0.939 33 H 0.044 0.956 34 H 0.406 0.594 35 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 -15.523 -0.263 15.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.211 4.211 3 Si 0.830 3.170 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.492 4.492 8 H 0.114 0.886 9 O -0.102 6.102 10 C 0.098 3.902 11 C -0.305 4.305 12 C 0.107 3.893 13 F -0.128 7.128 14 C -0.235 4.235 15 C -0.046 4.046 16 C -0.094 4.094 17 C -0.203 4.203 18 C -0.114 4.114 19 N -0.150 5.150 20 N -0.156 5.156 21 C 0.011 3.989 22 C -0.002 4.002 23 O -0.390 6.390 24 C -0.069 4.069 25 H 0.080 0.920 26 H 0.140 0.860 27 H 0.178 0.822 28 H 0.187 0.813 29 H 0.173 0.827 30 H 0.100 0.900 31 H 0.153 0.847 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.257 0.743 35 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.140 -15.013 -0.631 15.586 hybrid contribution 1.287 1.323 0.466 1.904 sum -2.854 -13.690 -0.165 13.985 Atomic orbital electron populations 1.70203 1.07672 1.28521 1.47870 1.26386 0.96679 1.02226 0.95780 0.84646 0.78262 0.75562 0.78523 1.17888 1.19488 1.19378 1.21786 0.92318 0.81682 1.53379 0.88623 1.84010 1.34692 1.11858 1.79679 1.19562 0.89556 0.88268 0.92791 1.20999 0.94113 0.98848 1.16577 1.17629 0.75953 0.94638 1.01078 1.91420 1.29984 1.97410 1.94021 1.20963 0.95424 0.95863 1.11255 1.20987 0.91879 0.97165 0.94547 1.17542 0.90821 0.90380 1.10615 1.18698 0.92630 1.04358 1.04614 1.23758 0.90017 0.98108 0.99550 1.77110 1.21499 1.07306 1.09103 1.48434 1.06017 1.29902 1.31207 1.21595 0.84483 0.97430 0.95373 1.22085 0.87647 0.96129 0.94297 1.86306 1.37746 1.75288 1.39630 1.23002 0.82943 1.01045 0.99889 0.91990 0.85959 0.82180 0.81298 0.82654 0.89989 0.84718 0.92072 0.93741 0.74301 0.76502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.44 13.67 21.61 0.30 -54.15 16 2 C -0.01 -0.64 5.49 84.82 0.47 -0.17 16 3 Si 1.01 42.90 29.55 68.60 2.03 44.93 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 5 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 7 C -0.42 -23.62 9.49 67.91 0.64 -22.98 16 8 H 0.10 5.12 5.21 -2.91 -0.02 5.11 16 9 O -0.20 -11.25 8.66 -21.91 -0.19 -11.43 16 10 C 0.15 7.15 6.63 22.79 0.15 7.30 16 11 C -0.29 -12.57 9.14 22.40 0.20 -12.37 16 12 C 0.13 4.66 7.29 22.39 0.16 4.82 16 13 F -0.15 -5.32 17.26 44.97 0.78 -4.55 16 14 C -0.22 -6.38 10.01 22.31 0.22 -6.16 16 15 C -0.03 -0.81 9.70 22.45 0.22 -0.59 16 16 C -0.09 -3.53 5.77 -19.92 -0.11 -3.64 16 17 C -0.19 -7.26 5.31 -20.33 -0.11 -7.37 16 18 C 0.07 3.07 11.30 85.51 0.97 4.04 16 19 N -0.33 -12.98 12.38 -56.44 -0.70 -13.68 16 20 N -0.37 -11.29 3.67 -347.14 -1.27 -12.57 16 21 C 0.13 2.85 6.87 86.38 0.59 3.44 16 22 C 0.08 1.49 7.23 71.98 0.52 2.01 16 23 O -0.58 -9.55 13.66 -148.98 -2.03 -11.59 16 24 C 0.08 2.25 11.32 83.81 0.95 3.20 16 25 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 26 H 0.12 5.67 5.64 -2.91 -0.02 5.65 16 27 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 28 H 0.17 3.41 8.06 -2.91 -0.02 3.38 16 29 H 0.16 7.33 8.06 -2.91 -0.02 7.31 16 30 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.13 1.97 8.07 -2.39 -0.02 1.95 16 32 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 2.93 9.12 -74.05 -0.68 2.25 16 35 H 0.22 4.07 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -74.44 318.71 4.25 -70.19 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.47 Total: 21.30 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 4.88 Total: -28.46 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -1.68 Total: -80.39 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -2.22 Total: -23.02 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.78 Total: -4.55 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -74.44 4.25 -70.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206562111.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.204 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds