Wall clock time and date at job start Tue Mar 31 2020 06:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86798 * 119.99643 * 2 1 4 4 H 1.48500 * 109.47539 * 274.98715 * 3 2 1 5 5 H 1.48497 * 109.47453 * 34.98940 * 3 2 1 6 6 H 1.48502 * 109.46986 * 154.98569 * 3 2 1 7 7 C 1.38802 * 119.99905 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99874 * 172.92970 * 7 2 1 9 9 N 1.36934 * 120.00405 * 352.93044 * 7 2 1 10 10 C 1.47427 * 125.65132 * 185.18683 * 9 7 2 11 11 C 1.54910 * 104.83386 * 155.90574 * 10 9 7 12 12 C 1.55158 * 101.58036 * 37.00944 * 11 10 9 13 13 H 1.08998 * 110.71881 * 83.03882 * 12 11 10 14 14 O 1.42903 * 110.71936 * 206.13365 * 12 11 10 15 15 C 1.35733 * 117.00000 * 203.86149 * 14 12 11 16 16 C 1.38985 * 119.90390 * 354.60332 * 15 14 12 17 17 C 1.37712 * 120.09606 * 179.97438 * 16 15 14 18 18 C 1.39783 * 119.90053 * 0.25809 * 17 16 15 19 19 C 1.47423 * 120.09300 * 179.74924 * 18 17 16 20 20 N 1.34773 * 119.99548 * 214.99799 * 19 18 17 21 21 S 1.71194 * 120.00138 * 34.99769 * 19 18 17 22 22 C 1.39787 * 119.81413 * 359.44454 * 18 17 16 23 23 C 1.37710 * 119.89711 * 0.57739 * 22 18 17 24 24 C 1.47019 * 125.64828 * 5.22596 * 9 7 2 25 25 H 0.97001 * 120.00173 * 359.97438 * 1 2 3 26 26 H 1.09001 * 110.36321 * 37.07006 * 10 9 7 27 27 H 1.09007 * 110.36705 * 274.74390 * 10 9 7 28 28 H 1.09001 * 111.00354 * 278.93974 * 11 10 9 29 29 H 1.08997 * 111.03879 * 155.09590 * 11 10 9 30 30 H 1.08000 * 119.95606 * 359.97438 * 16 15 14 31 31 H 1.07998 * 120.05018 * 179.97438 * 17 16 15 32 32 H 0.97002 * 120.00588 * 359.97438 * 20 19 18 33 33 H 0.97009 * 119.99728 * 179.97438 * 20 19 18 34 34 H 1.07994 * 120.05482 * 180.26940 * 22 18 17 35 35 H 1.08006 * 119.95050 * 179.71664 * 23 22 18 36 36 H 1.09001 * 109.88171 * 61.60517 * 24 9 7 37 37 H 1.09003 * 109.88376 * 300.44765 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3923 2.1074 -1.3947 5 1 1.5043 2.6200 0.8028 6 1 3.5964 1.4121 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0841 -1.2056 -0.1157 9 7 1.3334 -2.3836 0.1449 10 6 1.9496 -3.7170 0.2699 11 6 0.8913 -4.5754 1.0067 12 6 -0.4286 -4.0334 0.3971 13 1 -0.6387 -4.5152 -0.5578 14 8 -1.5173 -4.2170 1.3043 15 6 -2.7636 -4.2684 0.7690 16 6 -2.9448 -4.0325 -0.5886 17 6 -4.2074 -4.0841 -1.1360 18 6 -5.3082 -4.3690 -0.3230 19 6 -6.6624 -4.4199 -0.9035 20 7 -7.7202 -3.9960 -0.1841 21 16 -6.8911 -5.0175 -2.4914 22 6 -5.1207 -4.6119 1.0408 23 6 -3.8547 -4.5577 1.5799 24 6 -0.1281 -2.5325 0.2014 25 1 -0.4850 0.8400 0.0004 26 1 2.8658 -3.6579 0.8574 27 1 2.1562 -4.1334 -0.7161 28 1 0.9259 -4.4002 2.0819 29 1 1.0200 -5.6340 0.7810 30 1 -2.0942 -3.8083 -1.2153 31 1 -4.3474 -3.9003 -2.1910 32 1 -7.5907 -3.6578 0.7158 33 1 -8.6113 -4.0291 -0.5662 34 1 -5.9679 -4.8366 1.6716 35 1 -3.7093 -4.7407 2.6344 36 1 -0.5725 -2.1839 -0.7309 37 1 -0.5267 -1.9620 1.0404 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226652150.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:29 Heat of formation + Delta-G solvation = 9.824189 kcal Electronic energy + Delta-G solvation = -20561.598846 eV Core-core repulsion = 17430.362760 eV Total energy + Delta-G solvation = -3131.236086 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48227 -39.74026 -38.21205 -36.95398 -34.38629 -32.38252 -31.55864 -30.73421 -29.28988 -26.76579 -25.89751 -24.15342 -23.01296 -22.08006 -21.46987 -19.74210 -19.31653 -18.98828 -18.23744 -17.22699 -16.88968 -16.55498 -16.11851 -15.67510 -15.53828 -15.29073 -14.65239 -14.37802 -14.32847 -14.19182 -13.65917 -13.51101 -13.36150 -13.05424 -12.78195 -12.71352 -12.58822 -12.29320 -12.01794 -11.98670 -11.86911 -11.48024 -11.40398 -10.74372 -10.16910 -9.63995 -9.23113 -8.95606 -8.90644 -7.89548 -5.24883 -0.84147 0.27123 0.50987 0.93963 1.45794 1.46799 1.56378 2.07121 2.26754 2.48739 2.65509 3.22857 3.30937 3.54804 3.70145 3.77752 3.85335 3.94530 4.02453 4.12097 4.32926 4.42267 4.54848 4.64974 4.90800 4.95798 4.97809 5.00452 5.16665 5.21305 5.31215 5.35612 5.43351 5.47265 5.58448 5.66486 6.02673 6.14081 6.35356 7.04518 7.72098 8.35286 9.21191 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.019470 B = 0.003678 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.789788 B = 7611.446367 C = 8307.465230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.063 4.063 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.266 1.266 7 C -0.245 4.245 8 H 0.088 0.912 9 N -0.628 5.628 10 C 0.126 3.874 11 C -0.110 4.110 12 C 0.063 3.937 13 H 0.092 0.908 14 O -0.304 6.304 15 C 0.161 3.839 16 C -0.224 4.224 17 C -0.011 4.011 18 C -0.173 4.173 19 C 0.451 3.549 20 N -0.725 5.725 21 S -0.690 6.690 22 C -0.022 4.022 23 C -0.162 4.162 24 C 0.177 3.823 25 H 0.247 0.753 26 H 0.058 0.942 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.426 0.574 33 H 0.433 0.567 34 H 0.180 0.820 35 H 0.163 0.837 36 H 0.011 0.989 37 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 -10.536 7.023 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.257 4.257 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.190 1.190 7 C -0.373 4.373 8 H 0.106 0.894 9 N -0.356 5.356 10 C 0.001 3.999 11 C -0.148 4.148 12 C 0.006 3.994 13 H 0.110 0.890 14 O -0.215 6.215 15 C 0.112 3.888 16 C -0.243 4.243 17 C -0.032 4.032 18 C -0.178 4.178 19 C 0.190 3.810 20 N -0.256 5.256 21 S -0.556 6.556 22 C -0.043 4.043 23 C -0.181 4.181 24 C 0.051 3.949 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.262 0.738 33 H 0.269 0.731 34 H 0.197 0.803 35 H 0.180 0.820 36 H 0.029 0.971 37 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -12.189 -10.691 6.257 17.379 hybrid contribution 0.324 1.772 0.256 1.820 sum -11.865 -8.918 6.512 16.209 Atomic orbital electron populations 1.70173 1.06392 1.25339 1.57972 1.25667 0.96547 1.01101 1.02346 0.85090 0.77963 0.79199 0.77266 1.21473 1.22137 1.19021 1.19489 0.91817 0.83605 1.42433 0.89418 1.44676 1.01873 1.02718 1.86343 1.21847 0.95943 0.84323 0.97772 1.22821 0.90756 1.00437 1.00768 1.23837 0.85488 0.97176 0.92900 0.89003 1.86060 1.12974 1.85399 1.37105 1.19792 0.85762 0.91117 0.92098 1.21360 0.98907 1.08914 0.95120 1.21208 0.90476 0.91676 0.99839 1.18869 0.90480 1.13407 0.95087 1.23551 0.88780 0.76945 0.91742 1.43371 1.09282 1.54228 1.18670 1.93605 1.93773 1.60580 1.07638 1.21357 0.97773 0.93424 0.91750 1.20652 0.89687 1.06342 1.01387 1.21236 0.84876 0.90654 0.98135 0.94416 0.92397 0.94558 0.90433 0.86984 0.85513 0.84938 0.73783 0.73071 0.80298 0.81975 0.97061 0.96357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.90 10.36 21.65 0.22 -56.68 16 2 C -0.06 -3.58 5.48 84.86 0.46 -3.12 16 3 Si 0.98 45.27 29.56 68.60 2.03 47.30 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.24 -13.50 10.26 84.03 0.86 -12.64 16 8 H 0.09 4.57 7.84 -2.91 -0.02 4.55 16 9 N -0.63 -31.59 3.39 -691.99 -2.35 -33.94 16 10 C 0.13 4.75 7.23 86.85 0.63 5.38 16 11 C -0.11 -3.42 6.81 31.99 0.22 -3.20 16 12 C 0.06 2.24 2.74 31.78 0.09 2.33 16 13 H 0.09 3.01 6.24 -2.39 -0.01 3.00 16 14 O -0.30 -10.20 9.85 -90.56 -0.89 -11.09 16 15 C 0.16 4.72 6.68 22.63 0.15 4.87 16 16 C -0.22 -6.90 8.88 22.32 0.20 -6.70 16 17 C -0.01 -0.30 9.41 22.52 0.21 -0.09 16 18 C -0.17 -3.78 5.73 -20.11 -0.12 -3.89 16 19 C 0.45 9.19 7.03 86.66 0.61 9.80 16 20 N -0.72 -6.53 8.77 -50.68 -0.44 -6.97 16 21 S -0.69 -21.90 29.90 -56.49 -1.69 -23.59 16 22 C -0.02 -0.34 9.32 22.52 0.21 -0.13 16 23 C -0.16 -3.42 9.97 22.32 0.22 -3.19 16 24 C 0.18 8.56 4.94 86.73 0.43 8.99 16 25 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 26 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.13 4.26 5.60 -2.91 -0.02 4.25 16 31 H 0.13 3.96 7.53 -2.91 -0.02 3.94 16 32 H 0.43 0.82 7.98 -92.71 -0.74 0.08 16 33 H 0.43 2.83 8.81 -92.70 -0.82 2.01 16 34 H 0.18 1.04 7.59 -2.91 -0.02 1.02 16 35 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.01 0.61 7.27 -2.39 -0.02 0.60 16 37 H 0.02 1.03 7.21 -2.39 -0.02 1.01 16 Total: -1.00 -78.51 322.65 0.61 -77.90 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -0.44 Total: 8.66 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.18 Total: -1.60 kcal Atomic # 7 Polarization: -95.01 SS G_CDS: -2.57 Total: -97.58 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.89 Total: -11.09 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 16 Polarization: -21.90 SS G_CDS: -1.69 Total: -23.59 kcal Total: -78.51 0.61 -77.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226652150.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.722 kcal (2) G-P(sol) polarization free energy of solvation -78.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds