Wall clock time and date at job start Tue Mar 31 2020 06:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86798 * 120.00586 * 2 1 4 4 H 1.48496 * 109.47485 * 270.00372 * 3 2 1 5 5 H 1.48496 * 109.46615 * 30.00540 * 3 2 1 6 6 H 1.48496 * 109.47329 * 150.00238 * 3 2 1 7 7 C 1.38819 * 119.99421 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99766 * 180.27537 * 7 2 1 9 9 N 1.36934 * 120.00186 * 359.97438 * 7 2 1 10 10 C 1.47015 * 125.64923 * 359.69264 * 9 7 2 11 11 C 1.54329 * 107.26904 * 178.85055 * 10 9 7 12 12 C 1.55156 * 103.02080 * 338.14388 * 11 10 9 13 13 H 1.09007 * 111.00286 * 277.23352 * 12 11 10 14 14 O 1.42895 * 111.00876 * 153.37841 * 12 11 10 15 15 C 1.35736 * 117.00007 * 162.59466 * 14 12 11 16 16 C 1.38982 * 119.90673 * 5.00683 * 15 14 12 17 17 C 1.37711 * 120.09767 * 179.75924 * 16 15 14 18 18 C 1.39783 * 119.90081 * 0.49602 * 17 16 15 19 19 C 1.47421 * 120.09670 * 179.78471 * 18 17 16 20 20 N 1.34781 * 119.99904 * 34.97163 * 19 18 17 21 21 S 1.71203 * 120.00186 * 214.97775 * 19 18 17 22 22 C 1.39781 * 119.81264 * 359.75903 * 18 17 16 23 23 C 1.37716 * 119.90194 * 0.02562 * 22 18 17 24 24 C 1.47425 * 125.64835 * 180.02562 * 9 7 2 25 25 H 0.97006 * 119.99842 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.88256 * 298.39707 * 10 9 7 27 27 H 1.09002 * 109.87994 * 59.56310 * 10 9 7 28 28 H 1.08995 * 110.85696 * 219.67606 * 11 10 9 29 29 H 1.09006 * 110.67134 * 96.52291 * 11 10 9 30 30 H 1.07998 * 119.94916 * 0.02562 * 16 15 14 31 31 H 1.08001 * 120.05016 * 180.24996 * 17 16 15 32 32 H 0.97004 * 119.99709 * 0.02562 * 20 19 18 33 33 H 0.96993 * 119.99832 * 180.02562 * 20 19 18 34 34 H 1.08000 * 120.05160 * 180.02562 * 22 18 17 35 35 H 1.08006 * 119.94833 * 179.97438 * 23 22 18 36 36 H 1.08997 * 110.36955 * 322.93461 * 24 9 7 37 37 H 1.09002 * 110.36749 * 85.13861 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6525 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 0.0040 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1377 -2.5327 0.0064 11 6 -0.4488 -4.0440 -0.0260 12 6 0.8510 -4.6560 -0.6120 13 1 0.8549 -4.5959 -1.7004 14 8 1.0242 -6.0054 -0.1750 15 6 1.8957 -6.7735 -0.8770 16 6 2.6481 -6.2090 -1.9002 17 6 3.5372 -6.9835 -2.6117 18 6 3.6747 -8.3415 -2.3104 19 6 4.6217 -9.1757 -3.0724 20 7 5.7846 -8.6502 -3.5061 21 16 4.2442 -10.8118 -3.4067 22 6 2.9121 -8.9063 -1.2840 23 6 2.0287 -8.1235 -0.5746 24 6 1.9331 -3.7312 -0.0005 25 1 -0.4850 0.8401 0.0004 26 1 -0.5500 -2.0867 0.9115 27 1 -0.5620 -2.0499 -0.8739 28 1 -1.2994 -4.2512 -0.6752 29 1 -0.6328 -4.4206 0.9803 30 1 2.5385 -5.1606 -2.1348 31 1 4.1244 -6.5432 -3.4040 32 1 5.9985 -7.7232 -3.3165 33 1 6.4074 -9.1989 -4.0078 34 1 3.0156 -9.9551 -1.0477 35 1 1.4388 -8.5592 0.2183 36 1 2.8324 -3.7407 -0.6164 37 1 2.1684 -4.0412 1.0177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226652152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:32 Heat of formation + Delta-G solvation = 10.349102 kcal Electronic energy + Delta-G solvation = -20358.918111 eV Core-core repulsion = 17227.704787 eV Total energy + Delta-G solvation = -3131.213324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51423 -39.74438 -38.23315 -36.98308 -34.31500 -32.27753 -31.71599 -30.91697 -29.13710 -26.72059 -25.97647 -24.15593 -22.80533 -22.07009 -21.69667 -19.75586 -19.33233 -18.94148 -18.23679 -17.00406 -16.70278 -16.65348 -16.46930 -15.73517 -15.54594 -15.20017 -14.63742 -14.62813 -14.13691 -14.00966 -13.89003 -13.58089 -13.52981 -12.97585 -12.82658 -12.66683 -12.33616 -12.16240 -12.05095 -12.00896 -11.85439 -11.57688 -11.47993 -10.73242 -10.17138 -9.64383 -9.22790 -8.96871 -8.90024 -7.88063 -5.25185 -0.83632 0.26679 0.49861 0.94999 1.47619 1.48946 1.57562 1.99627 2.27919 2.49218 2.64777 3.22636 3.31639 3.54051 3.63406 3.77308 3.80862 3.91497 4.02638 4.09332 4.32903 4.44707 4.58052 4.71031 4.79939 4.87396 4.90816 4.97340 5.09907 5.17899 5.25520 5.42356 5.48003 5.57989 5.59104 5.70824 5.99816 6.13759 6.32950 7.05692 7.71164 8.34132 9.22288 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027587 B = 0.003136 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.739485 B = 8926.677608 C = 9736.430054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.062 4.062 3 Si 0.979 3.021 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.086 0.914 9 N -0.623 5.623 10 C 0.185 3.815 11 C -0.123 4.123 12 C 0.082 3.918 13 H 0.096 0.904 14 O -0.304 6.304 15 C 0.160 3.840 16 C -0.221 4.221 17 C -0.025 4.025 18 C -0.171 4.171 19 C 0.448 3.552 20 N -0.728 5.728 21 S -0.683 6.683 22 C -0.008 4.008 23 C -0.164 4.164 24 C 0.117 3.883 25 H 0.248 0.752 26 H 0.014 0.986 27 H 0.024 0.976 28 H 0.094 0.906 29 H 0.078 0.922 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.424 0.576 33 H 0.433 0.567 34 H 0.149 0.851 35 H 0.152 0.848 36 H 0.058 0.942 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -13.531 -5.172 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.256 4.256 3 Si 0.807 3.193 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.374 4.374 8 H 0.104 0.896 9 N -0.351 5.351 10 C 0.060 3.940 11 C -0.161 4.161 12 C 0.025 3.975 13 H 0.114 0.886 14 O -0.215 6.215 15 C 0.112 3.888 16 C -0.240 4.240 17 C -0.047 4.047 18 C -0.176 4.176 19 C 0.187 3.813 20 N -0.259 5.259 21 S -0.549 6.549 22 C -0.029 4.029 23 C -0.183 4.183 24 C -0.009 4.009 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.042 0.958 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.160 0.840 31 H 0.179 0.821 32 H 0.260 0.740 33 H 0.269 0.731 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.076 0.924 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 8.889 -14.396 -5.277 17.723 hybrid contribution 0.635 2.222 0.086 2.312 sum 9.524 -12.174 -5.191 16.305 Atomic orbital electron populations 1.70148 1.06311 1.25516 1.57862 1.25657 0.96611 1.01039 1.02259 0.85070 0.77630 0.78986 0.77575 1.21007 1.22309 1.19365 1.19445 0.91109 0.83294 1.43542 0.89613 1.44611 1.02417 1.00751 1.87299 1.20954 0.83888 0.90440 0.98734 1.22852 0.96046 0.94993 1.02248 1.23598 0.96963 0.77724 0.99208 0.88608 1.86085 1.58075 1.23615 1.53759 1.19693 0.88049 0.91268 0.89747 1.21446 1.01241 1.01998 0.99299 1.21253 0.95565 0.90454 0.97390 1.18893 1.03262 0.93575 1.01869 1.23641 0.84501 0.94139 0.79027 1.43434 1.15970 1.17546 1.48937 1.93605 1.86392 1.03223 1.71687 1.21315 0.90217 1.00017 0.91315 1.20590 1.03038 0.90309 1.04348 1.22096 0.95447 0.85150 0.98203 0.94218 0.96801 0.95767 0.88716 0.90354 0.84034 0.82102 0.74003 0.73133 0.83297 0.83042 0.92409 0.95762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.84 10.31 21.65 0.22 -54.62 16 2 C -0.06 -3.39 5.49 84.86 0.47 -2.92 16 3 Si 0.98 43.62 29.55 68.60 2.03 45.64 16 4 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.30 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.25 -13.02 10.28 84.04 0.86 -12.15 16 8 H 0.09 4.30 7.83 -2.91 -0.02 4.28 16 9 N -0.62 -30.14 3.39 -691.94 -2.35 -32.49 16 10 C 0.18 8.60 5.37 86.73 0.47 9.07 16 11 C -0.12 -4.22 6.68 31.78 0.21 -4.01 16 12 C 0.08 2.56 2.82 31.99 0.09 2.65 16 13 H 0.10 2.78 6.60 -2.38 -0.02 2.76 16 14 O -0.30 -8.58 9.95 -90.59 -0.90 -9.48 16 15 C 0.16 3.83 6.64 22.63 0.15 3.98 16 16 C -0.22 -4.58 8.69 22.32 0.19 -4.39 16 17 C -0.02 -0.39 9.32 22.52 0.21 -0.18 16 18 C -0.17 -3.03 5.73 -20.11 -0.12 -3.15 16 19 C 0.45 7.70 7.03 86.66 0.61 8.31 16 20 N -0.73 -5.38 8.77 -50.67 -0.44 -5.83 16 21 S -0.68 -19.01 29.90 -56.49 -1.69 -20.70 16 22 C -0.01 -0.15 9.41 22.52 0.21 0.06 16 23 C -0.16 -3.42 9.97 22.33 0.22 -3.20 16 24 C 0.12 4.38 6.59 86.86 0.57 4.95 16 25 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 26 H 0.01 0.73 7.52 -2.38 -0.02 0.71 16 27 H 0.02 1.25 7.37 -2.39 -0.02 1.23 16 28 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.08 2.58 8.14 -2.38 -0.02 2.56 16 30 H 0.14 3.05 5.28 -2.91 -0.02 3.04 16 31 H 0.16 1.35 7.58 -2.91 -0.02 1.33 16 32 H 0.42 0.57 7.97 -92.71 -0.74 -0.16 16 33 H 0.43 2.19 8.81 -92.71 -0.82 1.38 16 34 H 0.15 2.91 7.53 -2.91 -0.02 2.89 16 35 H 0.15 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.06 1.99 7.23 -2.39 -0.02 1.97 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -72.35 321.73 0.58 -71.76 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -0.44 Total: 6.68 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 4.15 Total: -0.96 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -2.57 Total: -92.94 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.90 Total: -9.48 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -19.01 SS G_CDS: -1.69 Total: -20.70 kcal Total: -72.35 0.58 -71.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226652152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.111 kcal (2) G-P(sol) polarization free energy of solvation -72.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds